mpicbg.trakem2.align

Class AlignmentUtils

java.lang.Object

mpicbg.trakem2.align.AlignmentUtils

public final class AlignmentUtils
extends Object

Author:

Stephan Saalfeld saalfeld@mpi-cbg.de

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AlignmentUtils.ParamPointMatch

Method Summary

Modifier and Type	Method and Description
protected static void	extractAndSaveLayerFeatures(List<Layer> layerRange, Rectangle box, double scale, Filter<Patch> filter, FloatArray2DSIFT.Param siftParam, boolean clearCache, int numThreads) Extract SIFT features and save them into the project folder.
static List<Patch>	filterPatches(Layer layer, Filter<Patch> filter)
static String	layerName(Layer layer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

layerName

public static final String layerName(Layer layer)

filterPatches

public static final List<Patch> filterPatches(Layer layer,
                                              Filter<Patch> filter)

extractAndSaveLayerFeatures

protected static final void extractAndSaveLayerFeatures(List<Layer> layerRange,
                                                        Rectangle box,
                                                        double scale,
                                                        Filter<Patch> filter,
                                                        FloatArray2DSIFT.Param siftParam,
                                                        boolean clearCache,
                                                        int numThreads)
                                                 throws ExecutionException,
                                                        InterruptedException

Extract SIFT features and save them into the project folder.

Parameters:

layerRange - the list of layers to be aligned

box - a rectangular region of interest that will be used for alignment

scale - scale factor <= 1.0

filter - a name based filter for Patches (can be null)

siftParam - SIFT extraction parameters

clearCache -

numThreads -

Throws:

ExecutionException

InterruptedException