Serialized Form
-
Package net.preibisch.legacy.mpicbg
-
Class net.preibisch.legacy.mpicbg.PointMatchGeneric
class PointMatchGeneric extends mpicbg.models.PointMatch implements Serializable- serialVersionUID:
- 1L
-
-
Package net.preibisch.legacy.registration.detection
-
Class net.preibisch.legacy.registration.detection.AbstractDetection
class AbstractDetection extends mpicbg.models.Point implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
-
distance
double distance
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id
long id
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isUsed
boolean isUsed
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useW
boolean useW
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weight
double weight
-
-
Class net.preibisch.legacy.registration.detection.Detection
- serialVersionUID:
- 1L
-
-
Package net.preibisch.mvrecon.fiji.plugin.interestpointregistration.statistics
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Class net.preibisch.mvrecon.fiji.plugin.interestpointregistration.statistics.GraphFrame
class GraphFrame extends JFrame implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
-
chart
org.jfree.chart.JFreeChart chart
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chartPanel
org.jfree.chart.ChartPanel chartPanel
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mainPanel
JPanel mainPanel
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mouseListener
MouseListenerTimelapse mouseListener
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-
Class net.preibisch.mvrecon.fiji.plugin.interestpointregistration.statistics.SelectTimepointEntry
class SelectTimepointEntry extends AbstractAction implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
chartPanel
org.jfree.chart.ChartPanel chartPanel
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data
ArrayList<RegistrationStatistics> data
-
-
-
Package net.preibisch.mvrecon.fiji.plugin.util
-
Class net.preibisch.mvrecon.fiji.plugin.util.MyMultiLineLabel
class MyMultiLineLabel extends Canvas implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
gd
ij.gui.GenericDialog gd
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line_ascent
int line_ascent
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line_height
int line_height
-
line_widths
int[] line_widths
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lines
String[] lines
-
margin_height
int margin_height
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margin_width
int margin_width
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max_width
int max_width
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min_width
int min_width
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num_lines
int num_lines
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panel
Panel panel
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-
-
Package net.preibisch.mvrecon.fiji.spimdata
-
Class net.preibisch.mvrecon.fiji.spimdata.GroupedViews
class GroupedViews extends mpicbg.spim.data.sequence.ViewId implements Serializable-
Serialized Fields
-
group
List<mpicbg.spim.data.sequence.ViewId> group
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-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer
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Class net.preibisch.mvrecon.fiji.spimdata.explorer.FilteredAndGroupedExplorerPanel
class FilteredAndGroupedExplorerPanel extends JPanel implements Serializable- serialVersionUID:
- -3767947754096099774L
-
Serialized Fields
-
colorMode
boolean colorMode
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data
AS extends SpimData2 data
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enableFlyThrough
boolean enableFlyThrough
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explorer
FilteredAndGroupedExplorer<AS extends SpimData2> explorer
-
firstSelectedVD
mpicbg.spim.data.generic.sequence.BasicViewDescription<?> firstSelectedVD
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io
XmlIoSpimData2 io
-
isMac
boolean isMac
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listeners
ArrayList<SelectedViewDescriptionListener<AS extends SpimData2>> listeners
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popups
ArrayList<ExplorerWindowSetable> popups
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selectedRows
HashSet<List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>> selectedRows
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table
JTable table
-
tableModel
ISpimDataTableModel<AS extends SpimData2> tableModel
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viewNeighboursWindow
ViewNeighboursWindow viewNeighboursWindow
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viewOverlapWindow
ViewOverlapWindow viewOverlapWindow
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viewSetupIdOverlay
ViewSetupIdOverlay viewSetupIdOverlay
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xml
URI xml
-
xmlLabel
JLabel xmlLabel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.FilteredAndGroupedTableModel
class FilteredAndGroupedTableModel extends AbstractTableModel implements Serializable- serialVersionUID:
- -6526338840427674269L
-
Serialized Fields
-
columnClasses
List<Class<? extends mpicbg.spim.data.generic.base.Entity>> columnClasses
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elements
List<List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>> elements
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filters
Map<Class<? extends mpicbg.spim.data.generic.base.Entity>,
List<? extends mpicbg.spim.data.generic.base.Entity>> filters -
groupingFactors
Set<Class<? extends mpicbg.spim.data.generic.base.Entity>> groupingFactors
-
hideMissingViews
boolean hideMissingViews
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panel
ExplorerWindow<AS extends SpimData2> panel
-
sortingFactors
List<Class<? extends mpicbg.spim.data.generic.base.Entity>> sortingFactors
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.ViewSetupExplorerPanel
class ViewSetupExplorerPanel extends FilteredAndGroupedExplorerPanel<AS extends SpimData2> implements Serializable- serialVersionUID:
- -2512096359830259015L
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.analyzeerror.AnalyzeErrorsResultsWindow
class AnalyzeErrorsResultsWindow extends JFrame implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
activeClickState
int activeClickState
-
activeRowModelIdx
int activeRowModelIdx
-
bdvResetPolicy
AnalyzeErrorsResultsWindow.BdvResetPolicy bdvResetPolicy
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currentRows
List<?> currentRows
-
data
SpimData2 data
-
errors
ArrayList<AnalyzeErrorsUtil.PairError> errors
-
overlapUniverse
Collection<? extends mpicbg.spim.data.sequence.ViewId> overlapUniverse
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panel
ViewSetupExplorerPanel<?> panel
-
params
AnalyzeErrorsUtil.Parameters params
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scroll
JScrollPane scroll
-
table
JTable table
-
universeGroupMapCache
Map<mpicbg.spim.data.sequence.ViewId,
Group<mpicbg.spim.data.sequence.ViewDescription>> universeGroupMapCache
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.bdv
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.bdv.ScrollableBrightnessDialog
class ScrollableBrightnessDialog extends bdv.tools.brightness.BrightnessDialog implements Serializable- serialVersionUID:
- -2021647829067995526L
-
Serialized Fields
-
colorsPanel
bdv.tools.brightness.BrightnessDialog.ColorsPanel colorsPanel
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minMaxPanels
bdv.tools.brightness.BrightnessDialog.MinMaxPanels minMaxPanels
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.bdv.ToggleDialogActionBrightness
class ToggleDialogActionBrightness extends bdv.tools.ToggleDialogAction implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
dialog
ScrollableBrightnessDialog dialog
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint
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Class net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint.InterestPointExplorerPanel
class InterestPointExplorerPanel extends JPanel implements Serializable- serialVersionUID:
- -3767947754096099774L
-
Serialized Fields
-
delete
ArrayList<ImgLib2Temp.Pair<InterestPoints,
mpicbg.spim.data.sequence.ViewId>> delete -
label
JLabel label
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table
JTable table
-
tableModel
InterestPointTableModel tableModel
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viewSetupExplorer
FilteredAndGroupedExplorer<?> viewSetupExplorer
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint.InterestPointExplorerPanel.MyRenderer
class MyRenderer extends DefaultTableCellRenderer implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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backgroundColor
Color backgroundColor
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-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint.InterestPointTableModel
class InterestPointTableModel extends AbstractTableModel implements Serializable- serialVersionUID:
- -1263388435427674269L
-
Serialized Fields
-
columnNames
ArrayList<String> columnNames
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correspondenceColorMap
HashMap<mpicbg.spim.data.sequence.ViewId,
HashMap<Integer, Integer>> correspondenceColorMap -
currentVDs
List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> currentVDs
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distanceFade
double distanceFade
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filterMode
boolean filterMode
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interestPointOverlay
InterestPointOverlay interestPointOverlay
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interestPointSources
ArrayList<InterestPointOverlay.InterestPointSource> interestPointSources
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panel
InterestPointExplorerPanel panel
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planeThickness
double planeThickness
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points
HashMap<mpicbg.spim.data.sequence.ViewId,
Collection<? extends net.imglib2.RealLocalizable>> points -
pointSizeScale
double pointSizeScale
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selectedCol
int selectedCol
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selectedRow
int selectedRow
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selectedState
int selectedState
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viewInterestPoints
ViewInterestPoints viewInterestPoints
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-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.popup
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Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.AnalyzeErrorPopup
class AnalyzeErrorPopup extends JMenuItem implements Serializable- serialVersionUID:
- 7784076140119163902L
-
Serialized Fields
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ipe
InterestPointExplorer<?> ipe
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panel
ViewSetupExplorerPanel<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.ApplyTransformationPopup
class ApplyTransformationPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.BakeManualTransformationPopup
class BakeManualTransformationPopup extends JMenuItem implements Serializable- serialVersionUID:
- 4627408819269954486L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.BDVPopup
class BDVPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
bdv
bdv.BigDataViewer bdv
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.BoundingBoxPopup
class BoundingBoxPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.DeconvolutionPopup
class DeconvolutionPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.DetectInterestPointsPopup
class DetectInterestPointsPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.DisplayFusedImagesPopup
class DisplayFusedImagesPopup extends JMenu implements Serializable- serialVersionUID:
- -4895470813542722644L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.DisplayRawImagesPopup
class DisplayRawImagesPopup extends JMenu implements Serializable- serialVersionUID:
- 5234649262342301390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.FlatFieldCorrectionPopup
class FlatFieldCorrectionPopup extends JMenuItem implements Serializable- serialVersionUID:
- 950277697000203629L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.FusionPopup
class FusionPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.IntensityAdjustmentPopup
class IntensityAdjustmentPopup extends JMenu implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.InterestPointsExplorerPopup
class InterestPointsExplorerPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
ipe
InterestPointExplorer<?> ipe
-
panel
ViewSetupExplorerPanel<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.LabelPopUp
class LabelPopUp extends JLabel implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.LazyBDVPopup
class LazyBDVPopup extends JMenuItem implements Serializable- serialVersionUID:
- -8463128348928763621L
-
Serialized Fields
-
activeBySetupId
Map<Integer,
bdv.viewer.SourceAndConverter<?>> activeBySetupId -
bdv
bdv.BigDataViewer bdv
-
firstTransformDone
boolean firstTransformDone
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panel
ExplorerWindow<?> panel
-
registeredListener
SelectedViewDescriptionListener<?> registeredListener
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setupBySetupId
Map<Integer,
bdv.tools.brightness.ConverterSetup> setupBySetupId -
sharedRange
double[] sharedRange
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.MaxProjectPopup
class MaxProjectPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.MissingViewsPopup
class MissingViewsPopup extends JMenu implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
markMissing
JMenuItem markMissing
-
markMissingRemoveMetadata
JMenuItem markMissingRemoveMetadata
-
markPresent
JMenuItem markPresent
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.PointSpreadFunctionsPopup
class PointSpreadFunctionsPopup extends JMenu implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.QualityPopup
class QualityPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.RegisterInterestPointsPopup
class RegisterInterestPointsPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.RegistrationExplorerPopup
class RegistrationExplorerPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
FilteredAndGroupedExplorerPanel<?> panel
-
re
RegistrationExplorer<?> re
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.RemoveDetectionsPopup
class RemoveDetectionsPopup extends JMenu implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.RemoveTransformationPopup
class RemoveTransformationPopup extends JMenu implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.ReorientSamplePopup
class ReorientSamplePopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.ResavePopup
class ResavePopup extends JMenu implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
FilteredAndGroupedExplorerPanel<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.Separator
class Separator extends JSeparator implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.SimpleHyperlinkPopup
class SimpleHyperlinkPopup extends JMenuItem implements Serializable- serialVersionUID:
- 1L
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.SpecifyCalibrationPopup
class SpecifyCalibrationPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.VisualizeDetectionsPopup
class VisualizeDetectionsPopup extends JMenuItem implements Serializable- serialVersionUID:
- 5234649267634013390L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.popup.VisualizeNonRigid
class VisualizeNonRigid extends JMenuItem implements Serializable- serialVersionUID:
- -4858927229313796971L
-
Serialized Fields
-
panel
ExplorerWindow<?> panel
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.registration
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.registration.RegistrationExplorerPanel
class RegistrationExplorerPanel extends JPanel implements Serializable- serialVersionUID:
- -3767947754096099774L
-
Serialized Fields
-
cache
ArrayList<mpicbg.spim.data.registration.ViewTransform> cache
-
explorer
RegistrationExplorer<?> explorer
-
lastSelectedVDs
List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> lastSelectedVDs
-
table
JTable table
-
tableModel
net.preibisch.mvrecon.fiji.spimdata.explorer.registration.RegistrationExplorerPanel.HierarchicalRegistrationTableModel tableModel
-
viewRegistrations
mpicbg.spim.data.registration.ViewRegistrations viewRegistrations
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.registration.RegistrationTableModel
class RegistrationTableModel extends AbstractTableModel implements Serializable- serialVersionUID:
- -1263388435427674269L
-
Serialized Fields
-
columnNames
ArrayList<String> columnNames
-
currentVD
mpicbg.spim.data.generic.sequence.BasicViewDescription<?> currentVD
-
panel
RegistrationExplorerPanel panel
-
viewRegistrations
mpicbg.spim.data.registration.ViewRegistrations viewRegistrations
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.selection
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.selection.SelectionDialog
class SelectionDialog extends JDialog implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
andButton
JRadioButton andButton
-
angleField
JTextField angleField
-
channelField
JTextField channelField
-
data
SpimData2 data
-
illuminationField
JTextField illuminationField
-
orButton
JRadioButton orButton
-
parent
JFrame parent
-
selectedViews
List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> selectedViews
-
tileField
JTextField tileField
-
timepointField
JTextField timepointField
-
viewSetupField
JTextField viewSetupField
-
wasCanceled
boolean wasCanceled
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.explorer.viewneighbours
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.viewneighbours.ViewNeighboursWindow
class ViewNeighboursWindow extends JFrame implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
data
SpimData2 data
-
labelList
JList<String> labelList
-
lastActual
Set<mpicbg.spim.data.sequence.ViewId> lastActual
-
lastApplied
Set<mpicbg.spim.data.sequence.ViewId> lastApplied
-
legend
JLabel legend
-
panel
FilteredAndGroupedExplorerPanel<?> panel
-
resetCombo
JComboBox<String> resetCombo
-
resetPolicy
ViewNeighboursWindow.ResetPolicy resetPolicy
-
suppressAutoApply
boolean suppressAutoApply
-
-
Class net.preibisch.mvrecon.fiji.spimdata.explorer.viewneighbours.ViewOverlapWindow
class ViewOverlapWindow extends JFrame implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
cbAngle
JCheckBox cbAngle
-
cbChannel
JCheckBox cbChannel
-
cbIllumination
JCheckBox cbIllumination
-
cbTile
JCheckBox cbTile
-
cbTimePoint
JCheckBox cbTimePoint
-
data
SpimData2 data
-
lastActual
Set<mpicbg.spim.data.sequence.ViewId> lastActual
-
lastApplied
Set<mpicbg.spim.data.sequence.ViewId> lastApplied
-
legend
JLabel legend
-
panel
FilteredAndGroupedExplorerPanel<?> panel
-
resetCombo
JComboBox<String> resetCombo
-
resetPolicy
ViewOverlapWindow.ResetPolicy resetPolicy
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.imgloaders
-
Class net.preibisch.mvrecon.fiji.spimdata.imgloaders.AllenOMEZarrLoader.OMEZARREntry
class OMEZARREntry extends Object implements Serializable- serialVersionUID:
- -709235111470115483L
-
Serialized Fields
-
higherDimensionIndicies
int[] higherDimensionIndicies
-
path
String path
-
-
-
Package net.preibisch.mvrecon.fiji.spimdata.interestpoints
-
Class net.preibisch.mvrecon.fiji.spimdata.interestpoints.CorrespondingInterestPoints
class CorrespondingInterestPoints extends Object implements Serializable- serialVersionUID:
- -3165385812553510745L
-
Serialized Fields
-
consensusSetId
int consensusSetId
The consensus set ID this correspondence belongs to: -1 = single-consensus mode (no multi-consensus RANSAC used) 0, 1, 2, ... = multi-consensus set ID -
correspondingDetectionId
int correspondingDetectionId
The detection id of the corresponding interest point in theInterestPoints -
correspondingLabel
String correspondingLabel
The label ofInterestPointsas stored in theViewInterestPointListsHashMap -
correspondingViewIdSetup
int correspondingViewIdSetup
TheViewIdthe corresponding interest point belongs to -
correspondingViewIdTP
int correspondingViewIdTP
TheViewIdthe corresponding interest point belongs to -
detectionId
int detectionId
The detection id of the interest point in thisInterestPoints
-
-
Class net.preibisch.mvrecon.fiji.spimdata.interestpoints.InterestPoint
class InterestPoint extends mpicbg.models.Point implements Serializable- serialVersionUID:
- 5615112297702152070L
-
Serialized Fields
-
id
int id
-
-
Class net.preibisch.mvrecon.fiji.spimdata.interestpoints.InterestPointsN5.InterestPointData
class InterestPointData extends Object implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
correspondences
ArrayList<CorrespondingInterestPoints> correspondences
-
ids
int[] ids
-
label
String label
-
locations
double[][] locations
-
setupId
int setupId
-
timepointId
int timepointId
-
-
Class net.preibisch.mvrecon.fiji.spimdata.interestpoints.InterestPointValue
class InterestPointValue extends InterestPoint implements Serializable- serialVersionUID:
- -4538307380458133556L
-
Serialized Fields
-
intensity
double intensity
-
-
Class net.preibisch.mvrecon.fiji.spimdata.interestpoints.ViewInterestPointLists
class ViewInterestPointLists extends mpicbg.spim.data.sequence.ViewId implements Serializable-
Serialized Fields
-
lookup
HashMap<String,
InterestPoints> lookup
-
-
-
-
Package net.preibisch.mvrecon.process.fusion.blk
-
Class net.preibisch.mvrecon.process.fusion.blk.SplitImgLoaderThinPlateSplineFusion.DonatedNail
class DonatedNail extends Object implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
donorViewId
mpicbg.spim.data.sequence.ViewId donorViewId
-
src
double[] src
-
target
double[] target
-
-
Class net.preibisch.mvrecon.process.fusion.blk.SplitImgLoaderThinPlateSplineFusion.LandmarkRecord
class LandmarkRecord extends Object implements Serializable- serialVersionUID:
- 1L
-
Serialized Fields
-
donorViewId
mpicbg.spim.data.sequence.ViewId donorViewId
-
source
double[] source
-
target
double[] target
-
type
String type
-
underlyingViewId
mpicbg.spim.data.sequence.ViewId underlyingViewId
-
-
-
Package net.preibisch.mvrecon.process.fusion.intensity
-
Class net.preibisch.mvrecon.process.fusion.intensity.Coefficients
class Coefficients extends Object implements Serializable-
Serialized Fields
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flattenedCoefficients
double[][] flattenedCoefficients
flattenedCoefficients[i]holds the flattened array of the i-the coefficient. That is, for linear mapy=a*x+b,flattenedCoefficients[0]holds all theas andflattenedCoefficients[1]holds all thebs. -
size
int[] size
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strides
int[] strides
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Class net.preibisch.mvrecon.process.fusion.intensity.IntensityCorrection.SerializableRealInterval
class SerializableRealInterval extends Object implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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max
double[] max
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min
double[] min
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Class net.preibisch.mvrecon.process.fusion.intensity.IntensityMatcher.CoefficientMatch
class CoefficientMatch extends Object implements Serializable-
Serialized Fields
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coeff1
int coeff1
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coeff2
int coeff2
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matches
Collection<mpicbg.models.PointMatch> matches
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numVoxels
int numVoxels
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-
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Class net.preibisch.mvrecon.process.fusion.intensity.ViewPairCoefficientMatches
class ViewPairCoefficientMatches extends Object implements Serializable-
Serialized Fields
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coefficientMatches
List<net.preibisch.mvrecon.process.fusion.intensity.IntensityMatcher.CoefficientMatch> coefficientMatches
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view1
mpicbg.spim.data.sequence.ViewId view1
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view2
mpicbg.spim.data.sequence.ViewId view2
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Package net.preibisch.mvrecon.process.fusion.intensity.mpicbg
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Class net.preibisch.mvrecon.process.fusion.intensity.mpicbg.FastAffineModel1D
class FastAffineModel1D extends mpicbg.models.AffineModel1D implements Serializable -
Class net.preibisch.mvrecon.process.fusion.intensity.mpicbg.Point1D
class Point1D extends mpicbg.models.Point implements Serializable -
Class net.preibisch.mvrecon.process.fusion.intensity.mpicbg.PointMatch1D
class PointMatch1D extends mpicbg.models.PointMatch implements Serializable
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Package net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating
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Class net.preibisch.mvrecon.process.interestpointregistration.global.pointmatchcreating.QualityPointMatch
class QualityPointMatch extends mpicbg.models.PointMatch implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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quality
double quality
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-
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Package net.preibisch.mvrecon.process.interestpointregistration.pairwise
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Class net.preibisch.mvrecon.process.interestpointregistration.pairwise.LinkedInterestPoint
class LinkedInterestPoint extends InterestPoint implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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link
P link
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Class net.preibisch.mvrecon.process.interestpointregistration.pairwise.MatcherPairwiseTools.MatchingTask
class MatchingTask extends Object implements Serializable- serialVersionUID:
- -6809028286920973919L
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Package net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation
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Package net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping
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Class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group
class Group extends Object implements Serializable- serialVersionUID:
- -3538287621574514991L
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Class net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.GroupedInterestPoint
class GroupedInterestPoint extends InterestPoint implements Serializable- serialVersionUID:
- -7473168262289156212L
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Serialized Fields
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view
V view
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-
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Package net.preibisch.mvrecon.process.interestpointremoval.histogram
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Class net.preibisch.mvrecon.process.interestpointremoval.histogram.Histogram
class Histogram extends org.jfree.chart.ui.ApplicationFrame implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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max
double max
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min
double min
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-
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Package net.preibisch.mvrecon.process.n5api
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Class net.preibisch.mvrecon.process.n5api.N5ApiTools.MultiResolutionLevelInfo
class MultiResolutionLevelInfo extends Object implements Serializable- serialVersionUID:
- 5392269335394869108L
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Serialized Fields
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absoluteDownsampling
int[] absoluteDownsampling
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blockSize
int[] blockSize
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dataset
String dataset
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dataType
org.janelia.saalfeldlab.n5.DataType dataType
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dimensions
long[] dimensions
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relativeDownsampling
int[] relativeDownsampling
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shardSize
int[] shardSize
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Package net.preibisch.mvrecon.process.pointcloud.pointdescriptor
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.LinkedPoint
class LinkedPoint extends mpicbg.models.Point implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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link
P link
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-
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Package net.preibisch.mvrecon.process.pointcloud.pointdescriptor.exception
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Exception Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.exception.NoSuitablePointsException
class NoSuitablePointsException extends Exception implements Serializable- serialVersionUID:
- 1L
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Package net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.FixedModel
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Serialized Fields
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m00
double m00
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m01
double m01
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m02
double m02
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m03
double m03
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m10
double m10
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m11
double m11
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m12
double m12
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m13
double m13
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m20
double m20
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m21
double m21
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m22
double m22
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m23
double m23
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-
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantAffineModel3D
class TranslationInvariantAffineModel3D extends TranslationInvariantModel<TranslationInvariantAffineModel3D> implements Serializable-
Serialized Fields
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m00
double m00
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m01
double m01
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m02
double m02
-
m10
double m10
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m11
double m11
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m12
double m12
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m20
double m20
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m21
double m21
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m22
double m22
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-
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantFixedModel
class TranslationInvariantFixedModel extends TranslationInvariantModel<TranslationInvariantFixedModel> implements Serializable-
Serialized Fields
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m00
double m00
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m01
double m01
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m02
double m02
-
m10
double m10
-
m11
double m11
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m12
double m12
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m20
double m20
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m21
double m21
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m22
double m22
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-
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantModel
class TranslationInvariantModel extends mpicbg.models.AbstractModel<M extends TranslationInvariantModel<M>> implements Serializable -
Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantRigidModel2D
class TranslationInvariantRigidModel2D extends TranslationInvariantModel<TranslationInvariantRigidModel2D> implements Serializable-
Serialized Fields
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cos
double cos
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itx
double itx
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ity
double ity
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sin
double sin
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tx
double tx
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ty
double ty
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-
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantRigidModel3D
class TranslationInvariantRigidModel3D extends TranslationInvariantModel<TranslationInvariantRigidModel3D> implements Serializable-
Serialized Fields
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m00
double m00
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m01
double m01
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m02
double m02
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m10
double m10
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m11
double m11
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m12
double m12
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m20
double m20
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m21
double m21
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m22
double m22
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N
double[][] N
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-
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantSimilarityModel3D
class TranslationInvariantSimilarityModel3D extends TranslationInvariantModel<TranslationInvariantSimilarityModel3D> implements Serializable-
Serialized Fields
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m00
double m00
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m01
double m01
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m02
double m02
-
m10
double m10
-
m11
double m11
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m12
double m12
-
m20
double m20
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m21
double m21
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m22
double m22
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N
double[][] N
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-
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Package net.preibisch.mvrecon.process.pointcloud.pointdescriptor.test
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Class net.preibisch.mvrecon.process.pointcloud.pointdescriptor.test.PointNode
class PointNode extends mpicbg.models.Point implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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numDimensions
int numDimensions
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-
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Package net.preibisch.mvrecon.process.splitting
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Class net.preibisch.mvrecon.process.splitting.SplitOctTree.OctTreeSplitResult
class OctTreeSplitResult extends SplitResult implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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avgDepth
double avgDepth
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avgDetections
double avgDetections
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avgMaxSets
double avgMaxSets
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avgOutlierPercent
double avgOutlierPercent
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criterionSatisfiedPercent
double criterionSatisfiedPercent
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leafCount
int leafCount
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maxDepth
int maxDepth
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maxDetections
int maxDetections
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maxMaxSets
int maxMaxSets
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minDepth
int minDepth
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minDetections
int minDetections
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minMaxSets
int minMaxSets
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splitCount
int splitCount
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withinTolerancePercent
double withinTolerancePercent
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Class net.preibisch.mvrecon.process.splitting.SplitResult
class SplitResult extends Object implements Serializable- serialVersionUID:
- 1L
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Serialized Fields
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numIntervals
int numIntervals
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serializedIntervals
ArrayList<long[][]> serializedIntervals
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-
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Package net.preibisch.mvrecon.vecmath
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Class net.preibisch.mvrecon.vecmath.AxisAngle4d
class AxisAngle4d extends Object implements Serializable- serialVersionUID:
- 3644296204459140589L
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Serialized Fields
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angle
double angle
The angle of rotation in radians. -
x
double x
The x coordinate. -
y
double y
The y coordinate. -
z
double z
The z coordinate.
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Class net.preibisch.mvrecon.vecmath.AxisAngle4f
class AxisAngle4f extends Object implements Serializable- serialVersionUID:
- -163246355858070601L
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Serialized Fields
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angle
float angle
The angle of rotation in radians. -
x
float x
The x coordinate. -
y
float y
The y coordinate. -
z
float z
The z coordinate.
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Class net.preibisch.mvrecon.vecmath.Color3f
class Color3f extends Tuple3f implements Serializable- serialVersionUID:
- -1861792981817493659L
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Class net.preibisch.mvrecon.vecmath.Matrix3d
class Matrix3d extends Object implements Serializable- serialVersionUID:
- 6837536777072402710L
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Serialized Fields
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m00
double m00
The first matrix element in the first row. -
m01
double m01
The second matrix element in the first row. -
m02
double m02
The third matrix element in the first row. -
m10
double m10
The first matrix element in the second row. -
m11
double m11
The second matrix element in the second row. -
m12
double m12
The third matrix element in the second row. -
m20
double m20
The first matrix element in the third row. -
m21
double m21
The second matrix element in the third row. -
m22
double m22
The third matrix element in the third row.
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-
Class net.preibisch.mvrecon.vecmath.Matrix3f
class Matrix3f extends Object implements Serializable- serialVersionUID:
- 329697160112089834L
-
Serialized Fields
-
m00
float m00
The first matrix element in the first row. -
m01
float m01
The second matrix element in the first row. -
m02
float m02
The third matrix element in the first row. -
m10
float m10
The first matrix element in the second row. -
m11
float m11
The second matrix element in the second row. -
m12
float m12
The third matrix element in the second row. -
m20
float m20
The first matrix element in the third row. -
m21
float m21
The second matrix element in the third row. -
m22
float m22
The third matrix element in the third row.
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-
Class net.preibisch.mvrecon.vecmath.Matrix4d
class Matrix4d extends Object implements Serializable- serialVersionUID:
- 8223903484171633710L
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Serialized Fields
-
m00
double m00
The first element of the first row. -
m01
double m01
The second element of the first row. -
m02
double m02
The third element of the first row. -
m03
double m03
The fourth element of the first row. -
m10
double m10
The first element of the second row. -
m11
double m11
The second element of the second row. -
m12
double m12
The third element of the second row. -
m13
double m13
The fourth element of the second row. -
m20
double m20
The first element of the third row. -
m21
double m21
The second element of the third row. -
m22
double m22
The third element of the third row. -
m23
double m23
The fourth element of the third row. -
m30
double m30
The first element of the fourth row. -
m31
double m31
The second element of the fourth row. -
m32
double m32
The third element of the fourth row. -
m33
double m33
The fourth element of the fourth row.
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-
Class net.preibisch.mvrecon.vecmath.Matrix4f
class Matrix4f extends Object implements Serializable- serialVersionUID:
- -8405036035410109353L
-
Serialized Fields
-
m00
float m00
The first element of the first row. -
m01
float m01
The second element of the first row. -
m02
float m02
The third element of the first row. -
m03
float m03
The fourth element of the first row. -
m10
float m10
The first element of the second row. -
m11
float m11
The second element of the second row. -
m12
float m12
The third element of the second row. -
m13
float m13
The fourth element of the second row. -
m20
float m20
The first element of the third row. -
m21
float m21
The second element of the third row. -
m22
float m22
The third element of the third row. -
m23
float m23
The fourth element of the third row. -
m30
float m30
The first element of the fourth row. -
m31
float m31
The second element of the fourth row. -
m32
float m32
The third element of the fourth row. -
m33
float m33
The fourth element of the fourth row.
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Class net.preibisch.mvrecon.vecmath.Point3d
class Point3d extends Tuple3d implements Serializable- serialVersionUID:
- 5718062286069042927L
-
Class net.preibisch.mvrecon.vecmath.Point3f
class Point3f extends Tuple3f implements Serializable- serialVersionUID:
- -8689337816398030143L
-
Class net.preibisch.mvrecon.vecmath.Point3i
class Point3i extends Tuple3i implements Serializable- serialVersionUID:
- 6149289077348153921L
-
Class net.preibisch.mvrecon.vecmath.Point4d
class Point4d extends Tuple4d implements Serializable- serialVersionUID:
- 1733471895962736949L
-
Class net.preibisch.mvrecon.vecmath.Point4f
class Point4f extends Tuple4f implements Serializable- serialVersionUID:
- 4643134103185764459L
-
Class net.preibisch.mvrecon.vecmath.Quat4d
class Quat4d extends Tuple4d implements Serializable- serialVersionUID:
- 7577479888820201099L
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Class net.preibisch.mvrecon.vecmath.Quat4f
class Quat4f extends Tuple4f implements Serializable- serialVersionUID:
- 2675933778405442383L
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Exception Class net.preibisch.mvrecon.vecmath.SingularMatrixException
class SingularMatrixException extends RuntimeException implements Serializable- serialVersionUID:
- -6776952045336842169L
-
Class net.preibisch.mvrecon.vecmath.Tuple3d
class Tuple3d extends Object implements Serializable- serialVersionUID:
- 5542096614926168415L
-
Serialized Fields
-
x
double x
The x coordinate. -
y
double y
The y coordinate. -
z
double z
The z coordinate.
-
-
Class net.preibisch.mvrecon.vecmath.Tuple3f
class Tuple3f extends Object implements Serializable- serialVersionUID:
- 5019834619484343712L
-
Serialized Fields
-
x
float x
The x coordinate. -
y
float y
The y coordinate. -
z
float z
The z coordinate.
-
-
Class net.preibisch.mvrecon.vecmath.Tuple3i
class Tuple3i extends Object implements Serializable- serialVersionUID:
- -732740491767276200L
-
Serialized Fields
-
x
int x
The x coordinate. -
y
int y
The y coordinate. -
z
int z
The z coordinate.
-
-
Class net.preibisch.mvrecon.vecmath.Tuple4d
class Tuple4d extends Object implements Serializable- serialVersionUID:
- -4748953690425311052L
-
Serialized Fields
-
w
double w
The w coordinate. -
x
double x
The x coordinate. -
y
double y
The y coordinate. -
z
double z
The z coordinate.
-
-
Class net.preibisch.mvrecon.vecmath.Tuple4f
class Tuple4f extends Object implements Serializable- serialVersionUID:
- 7068460319248845763L
-
Serialized Fields
-
w
float w
The w coordinate. -
x
float x
The x coordinate. -
y
float y
The y coordinate. -
z
float z
The z coordinate.
-
-
Class net.preibisch.mvrecon.vecmath.Vector3d
class Vector3d extends Tuple3d implements Serializable- serialVersionUID:
- 3761969948420550442L
-
Class net.preibisch.mvrecon.vecmath.Vector3f
class Vector3f extends Tuple3f implements Serializable- serialVersionUID:
- -7031930069184524614L
-
Class net.preibisch.mvrecon.vecmath.Vector4d
class Vector4d extends Tuple4d implements Serializable- serialVersionUID:
- 3938123424117448700L
-
Class net.preibisch.mvrecon.vecmath.Vector4f
class Vector4f extends Tuple4f implements Serializable- serialVersionUID:
- 8749319902347760659L
-