Package net.preibisch.mvrecon.fiji.spimdata.explorer.popup

Class BDVPopup

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.AbstractButton

javax.swing.JMenuItem

net.preibisch.mvrecon.fiji.spimdata.explorer.popup.BDVPopup

All Implemented Interfaces:

ImageObserver, ItemSelectable, MenuContainer, Serializable, Accessible, MenuElement, SwingConstants, BasicBDVPopup, ExplorerWindowSetable

public class BDVPopup
extends JMenuItem
implements ExplorerWindowSetable, BasicBDVPopup

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	BDVPopup.MyActionListener

Nested classes/interfaces inherited from class javax.swing.JMenuItem

JMenuItem.AccessibleJMenuItem

Nested classes/interfaces inherited from class javax.swing.AbstractButton

AbstractButton.AccessibleAbstractButton, AbstractButton.ButtonChangeListener

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
bdv.BigDataViewer	bdv
ExplorerWindow<?>	panel
static boolean	useLazyMode	Set by Data_Explorer's large-dataset dialog.

Fields inherited from class javax.swing.AbstractButton

actionListener, BORDER_PAINTED_CHANGED_PROPERTY, changeEvent, changeListener, CONTENT_AREA_FILLED_CHANGED_PROPERTY, DISABLED_ICON_CHANGED_PROPERTY, DISABLED_SELECTED_ICON_CHANGED_PROPERTY, FOCUS_PAINTED_CHANGED_PROPERTY, HORIZONTAL_ALIGNMENT_CHANGED_PROPERTY, HORIZONTAL_TEXT_POSITION_CHANGED_PROPERTY, ICON_CHANGED_PROPERTY, itemListener, MARGIN_CHANGED_PROPERTY, MNEMONIC_CHANGED_PROPERTY, model, MODEL_CHANGED_PROPERTY, PRESSED_ICON_CHANGED_PROPERTY, ROLLOVER_ENABLED_CHANGED_PROPERTY, ROLLOVER_ICON_CHANGED_PROPERTY, ROLLOVER_SELECTED_ICON_CHANGED_PROPERTY, SELECTED_ICON_CHANGED_PROPERTY, TEXT_CHANGED_PROPERTY, VERTICAL_ALIGNMENT_CHANGED_PROPERTY, VERTICAL_TEXT_POSITION_CHANGED_PROPERTY

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.SwingConstants

BOTTOM, CENTER, EAST, HORIZONTAL, LEADING, LEFT, NEXT, NORTH, NORTH_EAST, NORTH_WEST, PREVIOUS, RIGHT, SOUTH, SOUTH_EAST, SOUTH_WEST, TOP, TRAILING, VERTICAL, WEST

Constructor Summary

Constructors

Constructor	Description
BDVPopup()

Method Summary

Modifier and Type	Method	Description
boolean	bdvRunning()
void	closeBDV()
static bdv.BigDataViewer	createBDV(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, URI xml)
static bdv.BigDataViewer	createBDV(ExplorerWindow<?> panel)
bdv.BigDataViewer	getBDV()
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, bdv.viewer.ViewerFrame viewerFrame)	set BDV brightness by sampling the mid z plane (and 1/4 and 3/4 if z is large enough ) of the currently selected source (typically the first source) and getting quantiles from intensity histogram (slightly modified version of InitializeViewerState.initBrightness)
static net.imglib2.realtransform.AffineTransform3D	initTransform(int viewerWidth, int viewerHeight, boolean zoomedIn, bdv.viewer.ViewerState state)
static void	initTransform(bdv.viewer.ViewerPanel viewer)
void	reStartBDV()
void	setBDV(bdv.BigDataViewer bdv)	Adopt an already-running BigDataViewer instance (e.g. when an explorer transfers a live BDV across a panel rebuild, such as the BigStitcher Stitching <-> Multiview mode switch).
JMenuItem	setExplorerWindow(ExplorerWindow<?> panel)
void	updateBDV()

Methods inherited from class javax.swing.JMenuItem

actionPropertyChanged, addMenuDragMouseListener, addMenuKeyListener, configurePropertiesFromAction, fireMenuDragMouseDragged, fireMenuDragMouseEntered, fireMenuDragMouseExited, fireMenuDragMouseReleased, fireMenuKeyPressed, fireMenuKeyReleased, fireMenuKeyTyped, getAccelerator, getAccessibleContext, getComponent, getMenuDragMouseListeners, getMenuKeyListeners, getSubElements, getUIClassID, init, isArmed, menuSelectionChanged, paramString, processKeyEvent, processMenuDragMouseEvent, processMenuKeyEvent, processMouseEvent, removeMenuDragMouseListener, removeMenuKeyListener, setAccelerator, setArmed, setEnabled, setModel, setUI, updateUI

Methods inherited from class javax.swing.AbstractButton

addActionListener, addChangeListener, addImpl, addItemListener, checkHorizontalKey, checkVerticalKey, createActionListener, createActionPropertyChangeListener, createChangeListener, createItemListener, doClick, doClick, fireActionPerformed, fireItemStateChanged, fireStateChanged, getAction, getActionCommand, getActionListeners, getChangeListeners, getDisabledIcon, getDisabledSelectedIcon, getDisplayedMnemonicIndex, getHideActionText, getHorizontalAlignment, getHorizontalTextPosition, getIcon, getIconTextGap, getItemListeners, getLabel, getMargin, getMnemonic, getModel, getMultiClickThreshhold, getPressedIcon, getRolloverIcon, getRolloverSelectedIcon, getSelectedIcon, getSelectedObjects, getText, getUI, getVerticalAlignment, getVerticalTextPosition, imageUpdate, isBorderPainted, isContentAreaFilled, isFocusPainted, isRolloverEnabled, isSelected, paintBorder, removeActionListener, removeChangeListener, removeItemListener, removeNotify, setAction, setActionCommand, setBorderPainted, setContentAreaFilled, setDisabledIcon, setDisabledSelectedIcon, setDisplayedMnemonicIndex, setFocusPainted, setHideActionText, setHorizontalAlignment, setHorizontalTextPosition, setIcon, setIconTextGap, setLabel, setLayout, setMargin, setMnemonic, setMnemonic, setMultiClickThreshhold, setPressedIcon, setRolloverEnabled, setRolloverIcon, setRolloverSelectedIcon, setSelected, setSelectedIcon, setText, setUI, setVerticalAlignment, setVerticalTextPosition

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

useLazyMode

public static boolean useLazyMode

Set by Data_Explorer's large-dataset dialog. When true, the explorer registers a LazyBDVPopup as the (only) BDV menu item; when false, registers a regular BDVPopup. Defaults to eager.

panel

public ExplorerWindow<?> panel

bdv

public bdv.BigDataViewer bdv

Constructor Details

BDVPopup

public BDVPopup()

Method Details

setExplorerWindow

public JMenuItem setExplorerWindow(ExplorerWindow<?> panel)

Specified by:

setExplorerWindow in interface ExplorerWindowSetable

reStartBDV

public void reStartBDV()

closeBDV

public void closeBDV()

Specified by:

closeBDV in interface BasicBDVPopup

getBDV

public bdv.BigDataViewer getBDV()

Specified by:

getBDV in interface BasicBDVPopup

updateBDV

public void updateBDV()

Specified by:

updateBDV in interface BasicBDVPopup

bdvRunning

public boolean bdvRunning()

Specified by:

bdvRunning in interface BasicBDVPopup

setBDV

public void setBDV(bdv.BigDataViewer bdv)

Description copied from interface: BasicBDVPopup

Adopt an already-running BigDataViewer instance (e.g. when an explorer transfers a live BDV across a panel rebuild, such as the BigStitcher Stitching <-> Multiview mode switch). Implementations that manage their own dynamic source list (lazy popups) must re-wire their selection listener to the current panel and re-sync the current selection.

Specified by:

setBDV in interface BasicBDVPopup

initBrightness

public static void initBrightness(double cumulativeMinCutoff,
 double cumulativeMaxCutoff,
 bdv.viewer.ViewerFrame viewerFrame)

set BDV brightness by sampling the mid z plane (and 1/4 and 3/4 if z is large enough ) of the currently selected source (typically the first source) and getting quantiles from intensity histogram (slightly modified version of InitializeViewerState.initBrightness)

Parameters:

cumulativeMinCutoff - fraction of pixels that are allowed to be saturated at the lower end of the range.

cumulativeMaxCutoff - fraction of pixels that are allowed to be saturated at the upper end of the range.

viewerFrame - the ViewerFrame containing ViewerState and ConverterSetups

createBDV

public static bdv.BigDataViewer createBDV(ExplorerWindow<?> panel)

createBDV

public static bdv.BigDataViewer createBDV(mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
 URI xml)

initTransform

public static void initTransform(bdv.viewer.ViewerPanel viewer)

initTransform

public static net.imglib2.realtransform.AffineTransform3D initTransform(int viewerWidth,
 int viewerHeight,
 boolean zoomedIn,
 bdv.viewer.ViewerState state)