Package net.preibisch.mvrecon.fiji.spimdata.explorer

Class ViewSetupExplorerPanel<AS extends SpimData2>

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

net.preibisch.mvrecon.fiji.spimdata.explorer.FilteredAndGroupedExplorerPanel<AS>

net.preibisch.mvrecon.fiji.spimdata.explorer.ViewSetupExplorerPanel<AS>

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, ExplorerWindow<AS>, GroupedRowWindow

public class ViewSetupExplorerPanel<AS extends SpimData2>
extends FilteredAndGroupedExplorerPanel<AS>
implements ExplorerWindow<AS>

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
JCheckBox	groupIllumsCheckbox
JCheckBox	groupTilesCheckbox
JCheckBox	hideMissingViewsCheckbox

Fields inherited from class net.preibisch.mvrecon.fiji.spimdata.explorer.FilteredAndGroupedExplorerPanel

colorMode, currentInstance, data, explorer, firstSelectedVD, io, isMac, listeners, popups, selectedRows, table, tableModel, viewSetupIdOverlay, xml, xmlLabel

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
ViewSetupExplorerPanel(FilteredAndGroupedExplorer<AS> explorer, AS data, URI xml, XmlIoSpimData2 io, boolean requestStartBDV)

Method Summary

Modifier and Type	Method	Description
protected void	addColorMode()
protected void	addPopupMenu(JTable table)
boolean	channelsGrouped()
protected void	clearGroupingCheckboxes()	Update UI checkboxes when grouping is programmatically cleared.
protected String	getHelpHtml()
protected ListSelectionListener	getSelectionListener()
static JLabel	getXMLLabel(URI xml)
boolean	illumsGrouped()
void	initComponent()
ArrayList<ExplorerWindowSetable>	initPopups()
protected boolean	isSplitDataset()	Detects if the dataset is a Split dataset (created by splitting large images into tiles)
void	showInfoBox()
boolean	tilesGrouped()
static void	updateBDV(bdv.BigDataViewer bdv, boolean colorMode, mpicbg.spim.data.generic.AbstractSpimData<?> data, mpicbg.spim.data.generic.sequence.BasicViewDescription<?> firstVD, Collection<List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>> selectedRows)
void	updateHideMissingViewsCheckbox()	Updates the enabled state and label of the "Hide Missing Views" checkbox.

Methods inherited from class net.preibisch.mvrecon.fiji.spimdata.explorer.FilteredAndGroupedExplorerPanel

addAppleA, addHelp, addHistoryNavigation, addListener, addMaxIntensityShortcut, addNeighboursShortcut, addOverlapShortcut, addReCenterShortcut, addRightClickSaveAs, addScreenshot, addSelectionDialog, addViewSetupIdShortcut, bdvPopup, cleanupViewSetupIdOverlay, colorMode, disableGroupingIfActive, explorer, firstSelectedVD, getAnyBDVPopup, getEntityNamesOrIds, getInstanceFromNameOrId, getListeners, getSelectedRows, getSpimData, getTableModel, io, navigateHistoryBackward, navigateHistoryForward, openSelectionDialog, runningBdvPopup, saveSelectionToHistory, saveXML, selectedRows, selectedRowsGroups, selectedRowsViewId, selectedRowsViewIdGroups, selectViews, setSpimData, updateContent, updateFilter, xml

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.preibisch.mvrecon.fiji.spimdata.explorer.ExplorerWindow

bdvPopup, colorMode, firstSelectedVD, getSpimData, runningBdvPopup, saveXML, selectedRows, selectedRowsViewId, updateContent, xml

Field Details

groupTilesCheckbox

public JCheckBox groupTilesCheckbox

groupIllumsCheckbox

public JCheckBox groupIllumsCheckbox

hideMissingViewsCheckbox

public JCheckBox hideMissingViewsCheckbox

Constructor Details

ViewSetupExplorerPanel

public ViewSetupExplorerPanel(FilteredAndGroupedExplorer<AS> explorer,
 AS data,
 URI xml,
 XmlIoSpimData2 io,
 boolean requestStartBDV)

Method Details

tilesGrouped

public boolean tilesGrouped()

Specified by:

tilesGrouped in interface ExplorerWindow<AS extends SpimData2>

illumsGrouped

public boolean illumsGrouped()

Specified by:

illumsGrouped in interface ExplorerWindow<AS extends SpimData2>

channelsGrouped

public boolean channelsGrouped()

Specified by:

channelsGrouped in interface ExplorerWindow<AS extends SpimData2>

isSplitDataset

protected boolean isSplitDataset()

Detects if the dataset is a Split dataset (created by splitting large images into tiles)

Returns:

true if the imgLoader is a SplitViewerImgLoader or SplitMultiResolutionImgLoader

initComponent

public void initComponent()

Specified by:

initComponent in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

getXMLLabel

public static JLabel getXMLLabel(URI xml)

getSelectionListener

protected ListSelectionListener getSelectionListener()

Overrides:

getSelectionListener in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

clearGroupingCheckboxes

protected void clearGroupingCheckboxes()

Description copied from class: FilteredAndGroupedExplorerPanel

Update UI checkboxes when grouping is programmatically cleared. Override this method to uncheck grouping checkboxes in subclasses.

Specified by:

clearGroupingCheckboxes in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

updateHideMissingViewsCheckbox

public void updateHideMissingViewsCheckbox()

Updates the enabled state and label of the "Hide Missing Views" checkbox. The checkbox is only enabled when there are missing views in the dataset.

updateBDV

public static void updateBDV(bdv.BigDataViewer bdv,
 boolean colorMode,
 mpicbg.spim.data.generic.AbstractSpimData<?> data,
 mpicbg.spim.data.generic.sequence.BasicViewDescription<?> firstVD,
 Collection<List<mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>> selectedRows)

showInfoBox

public void showInfoBox()

Overrides:

showInfoBox in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

addPopupMenu

protected void addPopupMenu(JTable table)

Overrides:

addPopupMenu in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

addColorMode

protected void addColorMode()

Overrides:

addColorMode in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

getHelpHtml

protected String getHelpHtml()

Specified by:

getHelpHtml in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>

initPopups

public ArrayList<ExplorerWindowSetable> initPopups()

Specified by:

initPopups in class FilteredAndGroupedExplorerPanel<AS extends SpimData2>