| Modifier and Type | Method and Description |
|---|---|
protected ViewDescription |
SequenceDescription.createViewDescription(int timepointId,
int setupId) |
ViewDescription |
SequenceDescription.getViewDescription(int timepointId,
int setupId)
convenience method.
|
ViewDescription |
SequenceDescription.getViewDescription(ViewId view)
convenience method.
|
| Modifier and Type | Method and Description |
|---|---|
protected static ViewRegistrations |
StackList.createViewRegistrations(Map<ViewId,ViewDescription> viewDescriptionList,
double minResolution)
Assembles the
ViewRegistration object consisting of a list of ViewRegistrations for all ViewDescriptions that are present |
| Modifier and Type | Method and Description |
|---|---|
Map<ViewDescription,Pair<double[],String>> |
Apply_Transformation.queryBigDataViewer(SpimData data,
List<ViewId> viewIds,
ApplyParameters params) |
Map<ViewDescription,Pair<double[],String>> |
Apply_Transformation.queryRotationAxis(SpimData data,
List<ViewId> viewIds,
ApplyParameters params) |
Map<ViewDescription,Pair<double[],String>> |
Apply_Transformation.queryString(SpimData data,
List<ViewId> viewIds,
ApplyParameters params) |
| Modifier and Type | Method and Description |
|---|---|
static String |
Display_View.name(ViewDescription vd) |
static Pair<String,String> |
Interactive_Remove_Detections.queryLabelAndNewLabel(SpimData2 spimData,
ViewDescription vd) |
static boolean |
Interactive_Remove_Detections.removeDetections(SpimData2 spimData,
ViewDescription vd,
int projectionDim,
String label,
String newLabel) |
| Modifier and Type | Method and Description |
|---|---|
void |
Apply_Transformation.applyModels(SpimData spimData,
double minResolution,
int applyTo,
Map<ViewDescription,Pair<double[],String>> modelLinks) |
static <T extends RealType<T> & NativeType<T>> |
Max_Project.maxProject(List<? extends ViewDescription> vds,
ImgLoader imgLoader,
T type) |
| Modifier and Type | Method and Description |
|---|---|
List<ViewDescription> |
ModelLink.viewDescriptions() |
| Modifier and Type | Method and Description |
|---|---|
void |
ModelLink.add(ViewDescription vd) |
| Constructor and Description |
|---|
ModelLink(ViewDescription vd) |
| Modifier and Type | Method and Description |
|---|---|
protected RandomAccessibleInterval<FloatType> |
DifferenceOf.openAndDownsample(SpimData2 spimData,
ViewDescription vd,
AffineTransform3D t) |
| Constructor and Description |
|---|
InteractiveProjections(SpimData2 spimData,
ViewDescription vd,
String label,
String newLabel,
int projectionDim) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<ViewDescription> |
SpimData2.getAllViewIdsForChannelSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel channel) |
static ArrayList<ViewDescription> |
SpimData2.getAllViewIdsForChannelTimePointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel channel,
TimePoint timePoint) |
static ArrayList<ViewDescription> |
SpimData2.getAllViewIdsForTimePointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
TimePoint timepoint) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<TimePoint> |
SpimData2.getAllTimePointsSorted(Collection<? extends ViewDescription> vds) |
static ArrayList<ViewSetup> |
SpimData2.getAllViewSetups(Collection<? extends ViewDescription> vds) |
| Modifier and Type | Method and Description |
|---|---|
void |
ViewInterestPoints.createViewInterestPoints(Map<ViewId,ViewDescription> viewDescriptions)
Assembles the
ViewInterestPoints object consisting of a list of ViewInterestPointLists objects for all ViewDescriptions that are present |
ViewInterestPoints |
XmlIoViewInterestPoints.fromXml(org.jdom2.Element allInterestPointLists,
File basePath,
Map<ViewId,ViewDescription> viewDescriptions) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<ViewDescription> |
FusionHelper.assembleInputData(SpimData2 spimData,
TimePoint timepoint,
Channel channel,
List<ViewId> viewIdsToProcess) |
| Modifier and Type | Method and Description |
|---|---|
ArrayList<ViewDescription> |
ProcessForDeconvolution.getViewDescriptions() |
| Modifier and Type | Method and Description |
|---|---|
protected Blending |
ProcessForDeconvolution.getBlending(Interval interval,
int[] blendingBorder,
int[] blendingRange,
ViewDescription desc) |
protected static File |
ExtractPSF.getFileNameForViewId(ViewDescription vd,
ArrayList<Pair<Pair<Angle,Illumination>,String>> filenames) |
protected ArrayList<double[]> |
ProcessForDeconvolution.getLocationsOfCorrespondingBeads(TimePoint tp,
ViewDescription inputData,
String label) |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T> & NativeType<T>> |
ExtractPSF.loadAndTransformPSFs(ArrayList<Pair<Pair<Angle,Illumination>,String>> filenames,
ArrayList<ViewDescription> viewDesc,
T type,
HashMap<ViewId,AffineTransform3D> models) |
| Modifier and Type | Method and Description |
|---|---|
protected <T extends RealType<T>> |
ProcessFusion.getAllWeights(RandomAccessibleInterval<T> img,
ViewDescription desc,
ImgLoader imgLoader) |
protected Blending |
ProcessFusion.getBlending(Interval interval,
ViewDescription desc,
ImgLoader imgLoader) |
protected <T extends RealType<T>> |
ProcessFusion.getContentBased(RandomAccessibleInterval<T> img,
ViewDescription desc,
ImgLoader imgLoader) |
static double |
ProcessFusion.getMinRes(ViewDescription desc,
ImgLoader imgLoader) |
protected AffineTransform3D |
ProcessFusion.getTransform(ViewDescription inputData) |
| Modifier and Type | Method and Description |
|---|---|
protected AffineTransform3D[] |
ProcessFusion.getTransforms(ArrayList<ViewDescription> inputData) |
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