Uses of Class mpicbg.spim.data.SpimData (Fiji Javadocs 0-SNAPSHOT API)

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Packages that use SpimData
Package	Description
bigwarp
spim.fiji.datasetmanager
spim.fiji.plugin
spim.fiji.plugin.resave
spim.fiji.plugin.util
spim.fiji.spimdata
spim.fiji.spimdata.imgloaders

Uses of SpimData in bigwarp

Methods in bigwarp that return SpimData
Modifier and Type	Method and Description
`static SpimData`	BigWarpInit.`addToData(BigWarp.BigWarpData<?> bwdata, boolean isMoving, int setupId, String rootPath, String dataset)`

Methods in bigwarp with parameters of type SpimData
Modifier and Type	Method and Description
`void`	BigWarp.`setMovingSpimData(SpimData movingSpimData, File movingImageXml)`

Uses of SpimData in spim.fiji.datasetmanager

Methods in spim.fiji.datasetmanager with parameters of type SpimData
Modifier and Type	Method and Description
`static void`	SlideBook6.`applyAxis(SpimData data, double minResolution)`

Uses of SpimData in spim.fiji.plugin

Methods in spim.fiji.plugin with parameters of type SpimData
Modifier and Type	Method and Description
`static void`	Apply_Transformation.`applyAxis(SpimData data)`
`static void`	Specify_Calibration.`applyCal(Specify_Calibration.Cal maxCal, SpimData spimData, List<ViewId> viewIds)`
`void`	Apply_Transformation.`applyModels(SpimData spimData, double minResolution, int applyTo, Map<ViewDescription,Pair<double[],String>> modelLinks)`
`static <T extends RealType<T> & NativeType<T>> boolean`	Max_Project.`maxProject(SpimData data, List<? extends ViewId> viewIds, T type)`
`static void`	Apply_Transformation.`preConcatenateTransform(SpimData spimData, ViewId viewId, AffineTransform3D model, String name)`
`Map<ViewDescription,Pair<double[],String>>`	Apply_Transformation.`queryBigDataViewer(SpimData data, List<ViewId> viewIds, ApplyParameters params)`
`ApplyParameters`	Apply_Transformation.`queryParams(SpimData data, List<ViewId> viewIds)`
`Map<ViewDescription,Pair<double[],String>>`	Apply_Transformation.`queryRotationAxis(SpimData data, List<ViewId> viewIds, ApplyParameters params)`
`Map<ViewDescription,Pair<double[],String>>`	Apply_Transformation.`queryString(SpimData data, List<ViewId> viewIds, ApplyParameters params)`
`static void`	Apply_Transformation.`setModelToCalibration(SpimData spimData, ViewId viewId, double minResolution)`
`static void`	Apply_Transformation.`setModelToIdentity(SpimData spimData, ViewId viewId)`

Uses of SpimData in spim.fiji.plugin.resave

Methods in spim.fiji.plugin.resave with parameters of type SpimData
Modifier and Type	Method and Description
`static void`	Resave_TIFF.`writeTIFF(SpimData spimData, List<ViewId> viewIds, String path, boolean compress, ProgressWriter progressWriter)`

Uses of SpimData in spim.fiji.plugin.util

Methods in spim.fiji.plugin.util with parameters of type SpimData
Modifier and Type	Method and Description
`static HashMap<String,Integer>`	GUIHelper.`assembleRegistrationNames(SpimData data, List<ViewId> viewIds)`

Uses of SpimData in spim.fiji.spimdata

Subclasses of SpimData in spim.fiji.spimdata
Modifier and Type	Class and Description
`class`	`SpimData2` Extends the `SpimData` class; has additonally detections

Methods in spim.fiji.spimdata with parameters of type SpimData
Modifier and Type	Method and Description
`static ArrayList<Angle>`	SpimData2.`getAllAnglesForChannelTimepointSorted(SpimData data, Collection<? extends ViewId> viewIds, Channel c, TimePoint t)`
`static ArrayList<Angle>`	SpimData2.`getAllAnglesSorted(SpimData data, Collection<? extends ViewId> viewIds)`
`static ArrayList<Channel>`	SpimData2.`getAllChannelsSorted(SpimData data, Collection<? extends ViewId> viewIds)`
`static ArrayList<Illumination>`	SpimData2.`getAllIlluminationsForChannelTimepointSorted(SpimData data, Collection<? extends ViewId> viewIds, Channel c, TimePoint t)`
`static ArrayList<Illumination>`	SpimData2.`getAllIlluminationsSorted(SpimData data, Collection<? extends ViewId> viewIds)`
`static ArrayList<TimePoint>`	SpimData2.`getAllTimePointsSorted(SpimData data, Collection<? extends ViewId> viewIds)`
`static ArrayList<ViewDescription>`	SpimData2.`getAllViewIdsForChannelSorted(SpimData data, Collection<? extends ViewId> viewIds, Channel channel)`
`static ArrayList<ViewDescription>`	SpimData2.`getAllViewIdsForChannelTimePointSorted(SpimData data, Collection<? extends ViewId> viewIds, Channel channel, TimePoint timePoint)`
`static ArrayList<ViewDescription>`	SpimData2.`getAllViewIdsForTimePointSorted(SpimData data, Collection<? extends ViewId> viewIds, TimePoint timepoint)`
`static ArrayList<ViewId>`	SpimData2.`getAllViewIdsSorted(SpimData data, List<? extends ViewSetup> setups, List<? extends TimePoint> tps)`
`static ArrayList<ViewSetup>`	SpimData2.`getAllViewSetupsSorted(SpimData data, List<? extends ViewId> viewIds)`

Uses of SpimData in spim.fiji.spimdata.imgloaders

Methods in spim.fiji.spimdata.imgloaders with parameters of type SpimData
Modifier and Type	Method and Description
`void`	AbstractImgLoader.`updateXMLMetaData(SpimData data, boolean forceUpdate)` Updates the ViewSetups using the imageMetaDataCache

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