| Package | Description |
|---|---|
| fiji.plugin.trackmate | |
| fiji.plugin.trackmate.action | |
| fiji.plugin.trackmate.gui.components | |
| fiji.plugin.trackmate.gui.wizard | |
| fiji.plugin.trackmate.gui.wizard.descriptors |
| Modifier and Type | Method and Description |
|---|---|
protected TrackMate |
TrackMatePlugIn.createTrackMate(Model model,
Settings settings)
Hook for subclassers:
Creates the TrackMate instance that will be controlled in the GUI. |
| Modifier and Type | Method and Description |
|---|---|
protected WizardSequence |
TrackMatePlugIn.createSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings)
Hook for subclassers:
Will create and position the sequence that will be played by the wizard launched by this plugin. |
protected WizardSequence |
ManualTrackingPlugIn.createSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
protected void |
LoadTrackMatePlugIn.postRead(TrackMate trackmate)
Hook for subclassers:
The TrackMate object is loaded and properly configured. |
| Modifier and Type | Method and Description |
|---|---|
static ij.ImagePlus |
CaptureOverlayAction.capture(TrackMate trackmate,
int first,
int last)
Generates a new ImagePlus of type RGB, 2D over time, made by capturing
each time frame of the TrackMate display.
|
static ij.ImagePlus |
LabelImgExporter.createLabelImagePlus(TrackMate trackmate,
boolean exportSpotsAsDots,
boolean exportTracksOnly)
Creates a new label
ImagePlus where the spots of the specified
model are painted as ellipsoids taken from their shape, with their track
ID as pixel value. |
static ij.ImagePlus |
LabelImgExporter.createLabelImagePlus(TrackMate trackmate,
boolean exportSpotsAsDots,
boolean exportTracksOnly,
Logger logger)
Creates a new label
ImagePlus where the spots of the specified
model are painted as ellipsoids taken from their shape, with their track
ID as pixel value. |
void |
TrimNotVisibleAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
TrackMateAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent)
Executes this action within an application specified by the parameters.
|
void |
TrackBranchAnalysis.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
SpotGaussianFitter.SpotGaussianFitterAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ResetSpotTimeFeatureAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
RecomputeFeatureAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
PlotNSpotsVsTimeAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
MergeFileAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
LabelImgExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame gui) |
void |
IcyTrackExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ISBIChallengeExporter.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExtractTrackStackAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportTracksToXML.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportStatsTablesAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
ExportAllSpotsStatsAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
CloseGapsByLinearInterpolationAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame parent) |
void |
CaptureOverlayAction.execute(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings,
Frame gui) |
static void |
RecomputeFeatureAction.recompute(TrackMate trackmate,
Logger logger) |
static ij.ImagePlus |
ExtractTrackStackAction.trackStack(TrackMate trackmate,
Spot spot,
boolean do3d,
Logger logger) |
static ij.ImagePlus |
ExtractTrackStackAction.trackStack(TrackMate trackmate,
Spot start,
Spot end,
boolean do3d,
Logger logger) |
| Constructor and Description |
|---|
ActionChooserPanel(ActionProvider actionProvider,
TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
GrapherPanel(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
| Constructor and Description |
|---|
TrackMateWizardSequence(TrackMate trackmate,
SelectionModel selectionModel,
DisplaySettings displaySettings) |
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