| Package | Description |
|---|---|
| bdv | |
| bdv.gui | |
| bdv.ij | |
| bdv.img | |
| bdv.tools.transformation | |
| bdv.util | |
| bdv.viewer | |
| bdv.viewer.render | |
| bdv.viewer.state | |
| bigwarp | |
| bigwarp.source |
| Modifier and Type | Field and Description |
|---|---|
protected Interpolation |
AbstractSpimSource.ImgKey.method |
| Modifier and Type | Method and Description |
|---|---|
RealRandomAccessible<T> |
AbstractSpimSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
AbstractSpimSource.getInterpolatedSource(int t,
int level,
Interpolation method,
ThreadGroup threadGroup) |
| Constructor and Description |
|---|
ImgKey(int timepoint,
int level,
Interpolation method,
ThreadGroup threadGroup) |
| Constructor and Description |
|---|
BigwarpLandmarkSelectionPanel(BigWarp.BigWarpData<T> data,
List<SourceAndConverter<T>> sources,
String fieldOfViewOption,
List<Interval> outputIntervalList,
List<String> matchedPtNames,
Interpolation interp,
double[] offsetIn,
double[] resolution,
boolean isVirtual,
int nThreads,
ProgressWriter progressWriter)
Displays a dialog showing point matches
|
| Modifier and Type | Method and Description |
|---|---|
static <T> List<ij.ImagePlus> |
ApplyBigwarpPlugin.apply(BigWarp.BigWarpData<T> bwData,
LandmarkTableModel landmarks,
String tranformTypeOption,
String fieldOfViewOption,
String fieldOfViewPointFilter,
String resolutionOption,
double[] resolutionSpec,
double[] fovSpec,
double[] offsetSpec,
Interpolation interp,
boolean isVirtual,
int nThreads,
boolean wait,
ApplyBigwarpPlugin.WriteDestinationOptions writeOpts) |
static List<ij.ImagePlus> |
ApplyBigwarpPlugin.apply(ij.ImagePlus movingIp,
ij.ImagePlus targetIp,
LandmarkTableModel landmarks,
String tranformTypeOption,
String fieldOfViewOption,
String fieldOfViewPointFilter,
String resolutionOption,
double[] resolutionSpec,
double[] fovSpec,
double[] offsetSpec,
Interpolation interp,
boolean isVirtual,
boolean wait,
int nThreads) |
static List<ij.ImagePlus> |
ApplyBigwarpPlugin.apply(ij.ImagePlus movingIp,
ij.ImagePlus targetIp,
LandmarkTableModel landmarks,
String tranformTypeOption,
String fieldOfViewOption,
String fieldOfViewPointFilter,
String resolutionOption,
double[] resolutionSpec,
double[] fovSpec,
double[] offsetSpec,
Interpolation interp,
boolean isVirtual,
int nThreads,
boolean wait,
ApplyBigwarpPlugin.WriteDestinationOptions writeOpts) |
static <T> List<ij.ImagePlus> |
ApplyBigwarpPlugin.runExport(BigWarp.BigWarpData<T> data,
List<SourceAndConverter<T>> sources,
String fieldOfViewOption,
List<Interval> outputIntervalList,
List<String> matchedPtNames,
Interpolation interp,
double[] offsetIn,
double[] resolution,
boolean isVirtual,
int nThreads,
ProgressWriter progressWriter,
boolean show,
boolean wait,
ApplyBigwarpPlugin.WriteDestinationOptions writeOpts) |
static <S,T extends NativeType<T> & NumericType<T>> |
ApplyBigwarpPlugin.runN5Export(BigWarp.BigWarpData<S> data,
List<SourceAndConverter<S>> sources,
String fieldOfViewOption,
Interval outputInterval,
Interpolation interp,
double[] offset,
double[] resolution,
String unit,
ProgressWriter progressWriter,
ApplyBigwarpPlugin.WriteDestinationOptions writeOpts,
ExecutorService exec) |
static boolean |
ApplyBigwarpPlugin.validateInput(ij.ImagePlus movingIp,
ij.ImagePlus targetIp,
LandmarkTableModel landmarks,
String fieldOfViewOption,
String resolutionOption,
double[] resolutionSpec,
double[] fovSpec,
double[] offsetSpec,
Interpolation interp,
boolean isVirtual,
int nThreads) |
| Modifier and Type | Method and Description |
|---|---|
RealRandomAccessible<T> |
WarpedSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
RenamableSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
| Modifier and Type | Method and Description |
|---|---|
RealRandomAccessible<T> |
TransformedSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
| Modifier and Type | Method and Description |
|---|---|
InterpolatorFactory<T,RandomAccessible<T>> |
DefaultInterpolators.apply(Interpolation t) |
InterpolatorFactory<T,RandomAccessible<T>> |
DefaultInterpolators.get(Interpolation method) |
RealRandomAccessible<T> |
RandomAccessibleSource4D.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
RandomAccessibleSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
RandomAccessibleIntervalSource4D.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
RandomAccessibleIntervalSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<Void> |
PlaceHolderSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
AbstractSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
RealRandomAccessibleSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
| Modifier and Type | Method and Description |
|---|---|
Interpolation |
ViewerState.getInterpolation()
Get the interpolation method.
|
Interpolation |
SynchronizedViewerState.getInterpolation() |
Interpolation |
BasicViewerState.getInterpolation() |
Interpolation |
Interpolation.next() |
static Interpolation |
Interpolation.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static Interpolation[] |
Interpolation.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
RealRandomAccessible<T> |
Source.getInterpolatedSource(int t,
int level,
Interpolation method)
Get the 3D stack at timepoint index t, extended to infinity and interpolated.
|
void |
InterpolationModeListener.interpolationModeChanged(Interpolation mode) |
void |
ViewerState.setInterpolation(Interpolation interpolation)
Set the interpolation method (optional operation).
|
void |
ViewerPanel.setInterpolation(Interpolation mode)
Set the
Interpolation mode. |
void |
SynchronizedViewerState.setInterpolation(Interpolation interpolation) |
void |
BasicViewerState.setInterpolation(Interpolation i) |
| Modifier and Type | Method and Description |
|---|---|
static void |
Prefetcher.fetchCells(AffineTransform3D sourceToScreen,
int[] cellDimensions,
long[] dimensions,
Dimensions screenInterval,
Interpolation interpolation,
RandomAccess<?> cellsRandomAccess)
Access cells that will be needed for rendering to the screen.
|
| Modifier and Type | Method and Description |
|---|---|
Interpolation |
ViewerState.getInterpolation()
Deprecated.
Get the interpolation method.
|
protected Interpolation |
XmlIoViewerState.interpolationModeFromXml(org.jdom2.Element elem) |
| Modifier and Type | Method and Description |
|---|---|
protected org.jdom2.Element |
XmlIoViewerState.interpolationModeToXml(Interpolation mode) |
void |
ViewerState.setInterpolation(Interpolation method)
Deprecated.
Set the interpolation method.
|
| Modifier and Type | Field and Description |
|---|---|
protected Interpolation |
BigWarpExporter.interp |
| Modifier and Type | Method and Description |
|---|---|
static <T> BigWarpExporter<T> |
BigWarpBatchTransformFOV.applyBigWarpHelper(AbstractSpimData<?>[] spimDataP,
AbstractSpimData<?>[] spimDataQ,
ij.ImagePlus impP,
LandmarkTableModel ltm,
Interpolation interpolation) |
static <T> BigWarpExporter<?> |
BigWarpExporter.getExporter(BigWarp.BigWarpData<T> bwData,
List<SourceAndConverter<T>> transformedSources,
Interpolation interp,
ProgressWriter progressWriter) |
void |
BigWarpExporter.setInterp(Interpolation interp) |
| Constructor and Description |
|---|
BigWarpARGBExporter(List<SourceAndConverter<ARGBType>> sources,
List<ConverterSetup> convSetups,
int[] movingSourceIndexList,
int[] targetSourceIndexList,
Interpolation interp,
ProgressWriter progress) |
BigWarpExporter(List<SourceAndConverter<T>> sourcesIn,
List<ConverterSetup> convSetups,
int[] movingSourceIndexList,
int[] targetSourceIndexList,
Interpolation interp,
ProgressWriter progress) |
BigWarpRealExporter(List<SourceAndConverter<T>> sources,
List<ConverterSetup> convSetups,
int[] movingSourceIndexList,
int[] targetSourceIndexList,
Interpolation interp,
T baseType,
boolean needConversion,
ProgressWriter progress) |
BigWarpRealExporter(List<SourceAndConverter<T>> sources,
List<ConverterSetup> convSetups,
int[] movingSourceIndexList,
int[] targetSourceIndexList,
Interpolation interp,
T baseType,
ProgressWriter progress) |
| Modifier and Type | Method and Description |
|---|---|
RealRandomAccessible<T> |
WarpMagnitudeSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
JacobianDeterminantSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
RealRandomAccessible<T> |
GridSource.getInterpolatedSource(int t,
int level,
Interpolation method) |
Copyright © 2015–2021 Fiji. All rights reserved.