Hierarchy For All Packages

Package Hierarchies:

• sc.fiji.filamentdetector,
• sc.fiji.filamentdetector.analyzer,
• sc.fiji.filamentdetector.analyzer.tipfitter,
• sc.fiji.filamentdetector.detection,
• sc.fiji.filamentdetector.event,
• sc.fiji.filamentdetector.exporter,
• sc.fiji.filamentdetector.gui,
• sc.fiji.filamentdetector.gui.controller,
• sc.fiji.filamentdetector.gui.controller.analyzer,
• sc.fiji.filamentdetector.gui.controller.detection,
• sc.fiji.filamentdetector.gui.controller.tracking,
• sc.fiji.filamentdetector.gui.event,
• sc.fiji.filamentdetector.gui.fxwidgets,
• sc.fiji.filamentdetector.gui.model,
• sc.fiji.filamentdetector.gui.view,
• sc.fiji.filamentdetector.kymograph,
• sc.fiji.filamentdetector.kymograph.linedrawer,
• sc.fiji.filamentdetector.model,
• sc.fiji.filamentdetector.overlay,
• sc.fiji.filamentdetector.tracking,
• sc.fiji.filamentdetector.tracking.lap

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • sc.fiji.filamentdetector.model.Filaments
          • sc.fiji.filamentdetector.model.TrackedFilament
        • sc.fiji.filamentdetector.model.TrackedFilaments
  • org.scijava.AbstractContextual (implements org.scijava.Contextual)
    • org.scijava.plugin.AbstractRichPlugin (implements org.scijava.plugin.RichPlugin)
      • sc.fiji.filamentdetector.analyzer.AbstractAnalyzer (implements sc.fiji.filamentdetector.analyzer.Analyzer)
        • sc.fiji.filamentdetector.analyzer.LengthOverTimeAnalyzer
        • sc.fiji.filamentdetector.analyzer.NaiveNucleationAnalyzer
        • sc.fiji.filamentdetector.analyzer.TipFitterAnalyzer
      • sc.fiji.filamentdetector.detection.AbstractFilamentDetector (implements sc.fiji.filamentdetector.detection.FilamentDetector)
        • sc.fiji.filamentdetector.detection.IJ2RidgeDetectionFilamentDetector
        • sc.fiji.filamentdetector.detection.RidgeDetectionFilamentDetector
      • sc.fiji.filamentdetector.tracking.AbstractFilamentsTracker (implements sc.fiji.filamentdetector.tracking.FilamentsTracker)
        • sc.fiji.filamentdetector.tracking.BBoxLAPFilamentsTracker
      • org.scijava.service.AbstractService (implements org.scijava.service.Service)
        • sc.fiji.filamentdetector.analyzer.AnalyzerService (implements net.imagej.ImageJService)
        • sc.fiji.filamentdetector.overlay.DefaultColorService (implements sc.fiji.filamentdetector.overlay.ColorService)
        • sc.fiji.filamentdetector.overlay.DefaultFilamentOverlayService (implements sc.fiji.filamentdetector.overlay.FilamentOverlayService, java.awt.event.MouseListener)
        • sc.fiji.filamentdetector.detection.FilamentDetectorService (implements net.imagej.ImageJService)
        • sc.fiji.filamentdetector.tracking.FilamentTrackerService (implements net.imagej.ImageJService)
        • sc.fiji.filamentdetector.gui.GUIStatusService (implements net.imagej.ImageJService)
        • sc.fiji.filamentdetector.ImageUtilService (implements net.imagej.ImageJService)
    • org.scijava.event.SciJavaEvent
      • sc.fiji.filamentdetector.gui.event.DetectionParametersUpdatedEvent
      • sc.fiji.filamentdetector.event.FilamentSelectedEvent
      • sc.fiji.filamentdetector.event.FilterFilamentEvent
      • sc.fiji.filamentdetector.event.FilterTrackedFilamentEvent
      • sc.fiji.filamentdetector.event.ImageNotFoundEvent
      • sc.fiji.filamentdetector.event.PreventPanelSwitchEvent
      • sc.fiji.filamentdetector.event.TrackedFilamentSelectedEvent
  • sc.fiji.filamentdetector.gui.controller.AbstractController (implements sc.fiji.filamentdetector.gui.controller.Controller)
    • sc.fiji.filamentdetector.gui.controller.AboutController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.analyzer.AbstractAnalyzerController (implements sc.fiji.filamentdetector.gui.controller.analyzer.AnalyzerController, javafx.fxml.Initializable)
      • sc.fiji.filamentdetector.gui.controller.analyzer.LengthOverTimeAnalyzerController (implements sc.fiji.filamentdetector.gui.controller.analyzer.AnalyzerController)
      • sc.fiji.filamentdetector.gui.controller.analyzer.NaiveNucleationAnalyzerController (implements sc.fiji.filamentdetector.gui.controller.analyzer.AnalyzerController)
      • sc.fiji.filamentdetector.gui.controller.analyzer.TipFitterAnalyzerController (implements sc.fiji.filamentdetector.gui.controller.analyzer.AnalyzerController)
    • sc.fiji.filamentdetector.gui.controller.detection.AbstractFilamentDetectorController (implements sc.fiji.filamentdetector.gui.controller.detection.FilamentDetectorController)
      • sc.fiji.filamentdetector.gui.controller.detection.IJ2RidgeDetectionFilamentDetectorController
      • sc.fiji.filamentdetector.gui.controller.detection.RidgeDetectionFilamentDetectorController
    • sc.fiji.filamentdetector.gui.controller.tracking.AbstractFilamentsTrackerController (implements sc.fiji.filamentdetector.gui.controller.tracking.FilamentsTrackerController)
      • sc.fiji.filamentdetector.gui.controller.tracking.BBoxLAPFilamentsTrackerController
    • sc.fiji.filamentdetector.gui.controller.AnalyzeController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.DataExporterController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.DetailedFilamentController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.DetailedTrackedFilamentController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.DetectFilamentController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.KymographBuilderController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.MainController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.TrackingFilamentController (implements javafx.fxml.Initializable)
    • sc.fiji.filamentdetector.gui.controller.WelcomeController (implements javafx.fxml.Initializable)
  • sc.fiji.filamentdetector.exporter.AbstractDataExporter<T> (implements sc.fiji.filamentdetector.exporter.DataExporter<T>)
    • sc.fiji.filamentdetector.exporter.FilamentsExporter<Filaments>
      • sc.fiji.filamentdetector.exporter.CSVFilamentExporter
      • sc.fiji.filamentdetector.exporter.IJ1RoiFilamentExporter
      • sc.fiji.filamentdetector.exporter.JSONFilamentExporter
    • sc.fiji.filamentdetector.exporter.TrackedFilamentsExporter<TrackedFilaments>
      • sc.fiji.filamentdetector.exporter.CSVTrackedFilamentExporter
      • sc.fiji.filamentdetector.exporter.JSONTrackedFilamentExporter
  • sc.fiji.filamentdetector.kymograph.linedrawer.AbstractLineDrawer (implements sc.fiji.filamentdetector.kymograph.linedrawer.LineDrawer)
    • sc.fiji.filamentdetector.kymograph.linedrawer.AverageFilamentLineDrawer (implements sc.fiji.filamentdetector.kymograph.linedrawer.LineDrawer)
    • sc.fiji.filamentdetector.kymograph.linedrawer.LongestFilamentLineDrawer (implements sc.fiji.filamentdetector.kymograph.linedrawer.LineDrawer)
  • sc.fiji.filamentdetector.tracking.lap.BoundingBoxOverlapCostFunction (implements fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<K,J>)
  • sc.fiji.filamentdetector.Calibrations
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • sc.fiji.filamentdetector.gui.MainAppFrame
  • sc.fiji.filamentdetector.model.Filament (implements java.lang.Comparable<T>)
  • sc.fiji.filamentdetector.FilamentDetectorPlugin (implements org.scijava.command.Command)
  • sc.fiji.filamentdetector.model.FilamentFactory
  • sc.fiji.filamentdetector.tracking.lap.FilamentGraphSegmentSplitter
  • sc.fiji.filamentdetector.gui.model.FilamentModel
  • sc.fiji.filamentdetector.analyzer.tipfitter.FilamentTipFitter
  • sc.fiji.filamentdetector.FilamentWorkflow (implements org.scijava.Initializable)
  • sc.fiji.filamentdetector.FilesUtils
  • sc.fiji.filamentdetector.detection.FilteringParameters
  • sc.fiji.filamentdetector.tracking.FilteringTrackedFilamentsParameters
  • sc.fiji.filamentdetector.GeometryUtils
  • sc.fiji.filamentdetector.gui.GUIUtils
  • sc.fiji.filamentdetector.tracking.lap.JaqamanFilamentSegmentCostMatrixCreator (implements fiji.plugin.trackmate.tracking.jaqaman.costmatrix.CostMatrixCreator<K,J>, net.imglib2.algorithm.MultiThreaded)
  • sc.fiji.filamentdetector.kymograph.KymographGenerator
  • sc.fiji.filamentdetector.kymograph.KymographParameters
  • sc.fiji.filamentdetector.kymograph.LineGenerator
  • javafx.scene.Node (implements javafx.event.EventTarget, javafx.css.Styleable)
    • javafx.scene.Parent
      • javafx.scene.layout.Region
        • javafx.scene.control.Control (implements javafx.scene.control.Skinnable)
          • javafx.scene.control.Labeled
            • javafx.scene.control.Cell<T>
              • javafx.scene.control.IndexedCell<T>
                • javafx.scene.control.ListCell<T>
                  • sc.fiji.filamentdetector.gui.fxwidgets.ReorderableListCell
          • javafx.scene.control.ListView<T>
            • sc.fiji.filamentdetector.gui.fxwidgets.ReorderablePaneListView
          • javafx.scene.control.TableView<S>
            • sc.fiji.filamentdetector.gui.view.FilamentsTableView
            • sc.fiji.filamentdetector.gui.view.TrackedFilamentsTableView
  • sc.fiji.filamentdetector.gui.fxwidgets.SliderLabelSynchronizer
  • sc.fiji.filamentdetector.model.Tip
  • sc.fiji.filamentdetector.gui.model.TrackedFilamentModel
  • sc.fiji.filamentdetector.gui.fxwidgets.UpperLowerSynchronizer

Interface Hierarchy

• java.lang.Comparable<T>
  • org.scijava.Prioritized
    • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
      • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
      • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
      • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
      • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
        • net.imagej.ImageJService
          • sc.fiji.filamentdetector.overlay.ColorService
          • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.Contextual
  • org.scijava.plugin.RichPlugin (also extends org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• sc.fiji.filamentdetector.gui.controller.Controller
  • sc.fiji.filamentdetector.gui.controller.analyzer.AnalyzerController
  • sc.fiji.filamentdetector.gui.controller.detection.FilamentDetectorController (also extends javafx.fxml.Initializable)
  • sc.fiji.filamentdetector.gui.controller.tracking.FilamentsTrackerController (also extends javafx.fxml.Initializable)
• sc.fiji.filamentdetector.exporter.DataExporter<T>
• org.scijava.Disposable
  • org.scijava.service.Service (also extends org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • sc.fiji.filamentdetector.overlay.ColorService
      • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.plugin.HasPluginInfo
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.Identifiable
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• javafx.fxml.Initializable
  • sc.fiji.filamentdetector.gui.controller.detection.FilamentDetectorController (also extends sc.fiji.filamentdetector.gui.controller.Controller)
  • sc.fiji.filamentdetector.gui.controller.tracking.FilamentsTrackerController (also extends sc.fiji.filamentdetector.gui.controller.Controller)
• org.scijava.Initializable
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • sc.fiji.filamentdetector.overlay.ColorService
      • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• sc.fiji.filamentdetector.kymograph.linedrawer.LineDrawer
• org.scijava.Locatable
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.log.Logged
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.Named
  • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.plugin.RichPlugin)
  • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.plugin.RichPlugin)
  • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.plugin.RichPlugin)
• org.scijava.plugin.SciJavaPlugin
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.Versioned)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService
• org.scijava.Versioned
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin)
    • sc.fiji.filamentdetector.analyzer.Analyzer (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.detection.FilamentDetector (also extends org.scijava.Named)
    • sc.fiji.filamentdetector.tracking.FilamentsTracker (also extends org.scijava.Named)
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • sc.fiji.filamentdetector.overlay.ColorService
        • sc.fiji.filamentdetector.overlay.FilamentOverlayService

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • sc.fiji.filamentdetector.overlay.ImageDisplayMode