Module sc.fiji.filamentdetector

Package sc.fiji.filamentdetector.detection

Class RidgeDetectionFilamentDetector

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

sc.fiji.filamentdetector.detection.AbstractFilamentDetector

sc.fiji.filamentdetector.detection.RidgeDetectionFilamentDetector

All Implemented Interfaces:

Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Named, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.Versioned, FilamentDetector

public class RidgeDetectionFilamentDetector
extends AbstractFilamentDetector

Constructor Summary

Constructors

Constructor	Description
RidgeDetectionFilamentDetector()

Method Summary

Modifier and Type	Method	Description
void	detect()
void	detect(int channelIndex)
void	detectCurrentFrame()
void	detectCurrentFrame(int channelIndex)
void	detectFrame(int frame)
void	detectFrame(int frame, int channel)
double	getHighContrast()
double	getLineWidth()
double	getLowContrast()
double	getLowerThresh()
double	getMaxLength()
double	getMinLength()
de.biomedical_imaging.ij.steger.OverlapOption	getOverlapOption()
double	getSigma()
double	getUpperThresh()
boolean	isDarkLine()
boolean	isDoCorrectPosition()
boolean	isDoEstimateWidth()
boolean	isDoExtendLine()
void	setDarkLine(boolean isDarkLine)
void	setDoCorrectPosition(boolean doCorrectPosition)
void	setDoEstimateWidth(boolean doEstimateWidth)
void	setDoExtendLine(boolean doExtendLine)
void	setHighContrast(double highContrast)
void	setLineWidth(double lineWidth)
void	setLowContrast(double lowContrast)
void	setLowerThresh(double lowerThresh)
void	setMaxLength(double maxLength)
void	setMinLength(double minLength)
void	setOverlapOption(de.biomedical_imaging.ij.steger.OverlapOption overlapOption)
void	setSigma(double sigma)
void	setUpperThresh(double upperThresh)
String	toString()

Methods inherited from class sc.fiji.filamentdetector.detection.AbstractFilamentDetector

getDataset, getFilaments, getImageDisplay, getName, getSimplifyToleranceDistance, isDetectOnlyCurrentFrame, isSimplifyFilaments, setDataset, setDetectOnlyCurrentFrame, setFilaments, setImageDisplay, setName, setSimplifyFilaments, setSimplifyToleranceDistance, simplifyFilaments

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier, log

Methods inherited from interface org.scijava.Versioned

getVersion

Constructor Detail

RidgeDetectionFilamentDetector

public RidgeDetectionFilamentDetector()

Method Detail

detect

public void detect()

detect

public void detect(int channelIndex)

detectCurrentFrame

public void detectCurrentFrame()

detectCurrentFrame

public void detectCurrentFrame(int channelIndex)

detectFrame

public void detectFrame(int frame,
                        int channel)

detectFrame

public void detectFrame(int frame)

getSigma

public double getSigma()

setSigma

public void setSigma(double sigma)

getUpperThresh

public double getUpperThresh()

setUpperThresh

public void setUpperThresh(double upperThresh)

getLowerThresh

public double getLowerThresh()

setLowerThresh

public void setLowerThresh(double lowerThresh)

getMinLength

public double getMinLength()

setMinLength

public void setMinLength(double minLength)

getMaxLength

public double getMaxLength()

setMaxLength

public void setMaxLength(double maxLength)

isDarkLine

public boolean isDarkLine()

setDarkLine

public void setDarkLine(boolean isDarkLine)

isDoCorrectPosition

public boolean isDoCorrectPosition()

setDoCorrectPosition

public void setDoCorrectPosition(boolean doCorrectPosition)

isDoEstimateWidth

public boolean isDoEstimateWidth()

setDoEstimateWidth

public void setDoEstimateWidth(boolean doEstimateWidth)

isDoExtendLine

public boolean isDoExtendLine()

setDoExtendLine

public void setDoExtendLine(boolean doExtendLine)

getOverlapOption

public de.biomedical_imaging.ij.steger.OverlapOption getOverlapOption()

setOverlapOption

public void setOverlapOption(de.biomedical_imaging.ij.steger.OverlapOption overlapOption)

getLineWidth

public double getLineWidth()

setLineWidth

public void setLineWidth(double lineWidth)

getHighContrast

public double getHighContrast()

setHighContrast

public void setHighContrast(double highContrast)

getLowContrast

public double getLowContrast()

setLowContrast

public void setLowContrast(double lowContrast)

toString

public String toString()

Specified by:

toString in interface FilamentDetector

Overrides:

toString in class org.scijava.plugin.AbstractRichPlugin