Module sc.fiji.filamentdetector

Package sc.fiji.filamentdetector

Class FilamentWorkflow

java.lang.Object

sc.fiji.filamentdetector.FilamentWorkflow

All Implemented Interfaces:

org.scijava.Initializable

public class FilamentWorkflow
extends Object
implements org.scijava.Initializable

Constructor Summary

Constructors

Constructor	Description
FilamentWorkflow(org.scijava.Context context, net.imagej.display.ImageDisplay imd)

Method Summary

Modifier and Type	Method	Description
void	detect()
void	detectCurrentFrame()
void	filterFilament(FilteringParameters filteringParameters)
void	filterTrackedFilament(FilteringTrackedFilamentsParameters filteringParameters)
Calibrations	getCalibrations()
org.scijava.Context	getContext()
net.imagej.Dataset	getDataset()
FilamentDetector	getFilamentDetector()
Filaments	getFilaments()
FilamentsTracker	getFilamentsTracker()
net.imagej.display.ImageDisplay	getImageDisplay()
net.imagej.display.ImageDisplay	getSourceImage()
TrackedFilaments	getTrackedFilaments()
void	initialize()
void	setFilamentDetector(FilamentDetector filamentDetector)
void	setFilamentsTracker(FilamentsTracker filamentsTracker)
void	setImageDisplay(net.imagej.display.ImageDisplay imageDisplay)
void	track()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilamentWorkflow

public FilamentWorkflow(org.scijava.Context context,
                        net.imagej.display.ImageDisplay imd)

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

setFilamentDetector

public void setFilamentDetector(FilamentDetector filamentDetector)

setFilamentsTracker

public void setFilamentsTracker(FilamentsTracker filamentsTracker)

detectCurrentFrame

public void detectCurrentFrame()

detect

public void detect()

track

public void track()

getDataset

public net.imagej.Dataset getDataset()

setImageDisplay

public void setImageDisplay(net.imagej.display.ImageDisplay imageDisplay)

getImageDisplay

public net.imagej.display.ImageDisplay getImageDisplay()

getSourceImage

public net.imagej.display.ImageDisplay getSourceImage()

getCalibrations

public Calibrations getCalibrations()

getFilamentDetector

public FilamentDetector getFilamentDetector()

getFilamentsTracker

public FilamentsTracker getFilamentsTracker()

getFilaments

public Filaments getFilaments()

getTrackedFilaments

public TrackedFilaments getTrackedFilaments()

filterFilament

public void filterFilament(FilteringParameters filteringParameters)

filterTrackedFilament

public void filterTrackedFilament(FilteringTrackedFilamentsParameters filteringParameters)

getContext

public org.scijava.Context getContext()