Module sc.fiji.filamentdetector

Package sc.fiji.filamentdetector.overlay

Class DefaultFilamentOverlayService

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

org.scijava.service.AbstractService

sc.fiji.filamentdetector.overlay.DefaultFilamentOverlayService

All Implemented Interfaces:

MouseListener, Comparable<org.scijava.Prioritized>, EventListener, net.imagej.ImageJService, org.scijava.Contextual, org.scijava.Disposable, org.scijava.Identifiable, org.scijava.Initializable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.service.Service, org.scijava.Versioned, FilamentOverlayService

public class DefaultFilamentOverlayService
extends org.scijava.service.AbstractService
implements FilamentOverlayService, MouseListener

Constructor Summary

Constructors

Constructor	Description
DefaultFilamentOverlayService()

Method Summary

Modifier and Type	Method	Description
void	add(Filament filament)
void	add(Filaments filaments)
void	add(TrackedFilament trackedFilament)
void	add(TrackedFilaments trackedFilaments)
void	autoScaleImage()
void	clearSelection()
void	disableOverlay(boolean disable)
void	exportToROIManager()
int	getColorAlpha()
int	getFilamentWidth()
net.imagej.display.ImageDisplay	getImageDisplay()
int	getTipDiameter()
boolean	isDrawBoundingBoxes()
boolean	isDrawMinusTips()
boolean	isDrawPlusTips()
void	mouseClicked(MouseEvent event)
void	mouseEntered(MouseEvent event)
void	mouseExited(MouseEvent event)
void	mousePressed(MouseEvent event)
void	mouseReleased(MouseEvent event)
void	refresh()
void	remove(Filament filament)
void	remove(Filaments filaments)
void	remove(TrackedFilament trackedFilament)
void	remove(TrackedFilaments trackedFilaments)
void	reset()
void	setColorAlpha(int colorAlpha)
void	setDrawBoundingBoxes(boolean drawBoundingBoxes)
void	setDrawMinusTips(boolean drawMinusTips)
void	setDrawPlusTips(boolean drawPlusTips)
void	setFilamentWidth(int filamentWidth)
void	setImageDisplay(net.imagej.display.ImageDisplay imageDisplay)
void	setSelected(Filament filament, boolean moveToFrame, boolean clearSelection)
void	setSelected(TrackedFilament trackedFilament, boolean moveToFrame, boolean clearSelection)
void	setTipDiameter(int tipDiameter)
void	setViewMode(ImageDisplayMode viewMode)
void	updateLineWidth()
void	updateTransparency()

Methods inherited from class org.scijava.service.AbstractService

getContext, setContext, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual

context

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Disposable

dispose

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier, log

Methods inherited from interface org.scijava.service.Service

initialize, registerEventHandlers

Methods inherited from interface org.scijava.Versioned

getVersion

Constructor Detail

DefaultFilamentOverlayService

public DefaultFilamentOverlayService()

Method Detail

add

public void add(Filament filament)

Specified by:

add in interface FilamentOverlayService

add

public void add(Filaments filaments)

Specified by:

add in interface FilamentOverlayService

add

public void add(TrackedFilament trackedFilament)

Specified by:

add in interface FilamentOverlayService

add

public void add(TrackedFilaments trackedFilaments)

Specified by:

add in interface FilamentOverlayService

clearSelection

public void clearSelection()

Specified by:

clearSelection in interface FilamentOverlayService

disableOverlay

public void disableOverlay(boolean disable)

Specified by:

disableOverlay in interface FilamentOverlayService

exportToROIManager

public void exportToROIManager()

Specified by:

exportToROIManager in interface FilamentOverlayService

getColorAlpha

public int getColorAlpha()

Specified by:

getColorAlpha in interface FilamentOverlayService

getFilamentWidth

public int getFilamentWidth()

Specified by:

getFilamentWidth in interface FilamentOverlayService

getImageDisplay

public net.imagej.display.ImageDisplay getImageDisplay()

Specified by:

getImageDisplay in interface FilamentOverlayService

mouseClicked

public void mouseClicked(MouseEvent event)

Specified by:

mouseClicked in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent event)

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent event)

Specified by:

mouseExited in interface MouseListener

mousePressed

public void mousePressed(MouseEvent event)

Specified by:

mousePressed in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent event)

Specified by:

mouseReleased in interface MouseListener

remove

public void remove(Filament filament)

Specified by:

remove in interface FilamentOverlayService

remove

public void remove(Filaments filaments)

Specified by:

remove in interface FilamentOverlayService

remove

public void remove(TrackedFilament trackedFilament)

Specified by:

remove in interface FilamentOverlayService

remove

public void remove(TrackedFilaments trackedFilaments)

Specified by:

remove in interface FilamentOverlayService

reset

public void reset()

Specified by:

reset in interface FilamentOverlayService

refresh

public void refresh()

Specified by:

refresh in interface FilamentOverlayService

setColorAlpha

public void setColorAlpha(int colorAlpha)

Specified by:

setColorAlpha in interface FilamentOverlayService

setFilamentWidth

public void setFilamentWidth(int filamentWidth)

Specified by:

setFilamentWidth in interface FilamentOverlayService

setImageDisplay

public void setImageDisplay(net.imagej.display.ImageDisplay imageDisplay)

Specified by:

setImageDisplay in interface FilamentOverlayService

setSelected

public void setSelected(Filament filament,
                        boolean moveToFrame,
                        boolean clearSelection)

Specified by:

setSelected in interface FilamentOverlayService

setSelected

public void setSelected(TrackedFilament trackedFilament,
                        boolean moveToFrame,
                        boolean clearSelection)

Specified by:

setSelected in interface FilamentOverlayService

isDrawBoundingBoxes

public boolean isDrawBoundingBoxes()

Specified by:

isDrawBoundingBoxes in interface FilamentOverlayService

setDrawBoundingBoxes

public void setDrawBoundingBoxes(boolean drawBoundingBoxes)

Specified by:

setDrawBoundingBoxes in interface FilamentOverlayService

isDrawPlusTips

public boolean isDrawPlusTips()

Specified by:

isDrawPlusTips in interface FilamentOverlayService

setDrawPlusTips

public void setDrawPlusTips(boolean drawPlusTips)

Specified by:

setDrawPlusTips in interface FilamentOverlayService

isDrawMinusTips

public boolean isDrawMinusTips()

Specified by:

isDrawMinusTips in interface FilamentOverlayService

setDrawMinusTips

public void setDrawMinusTips(boolean drawMinusTips)

Specified by:

setDrawMinusTips in interface FilamentOverlayService

getTipDiameter

public int getTipDiameter()

Specified by:

getTipDiameter in interface FilamentOverlayService

setTipDiameter

public void setTipDiameter(int tipDiameter)

Specified by:

setTipDiameter in interface FilamentOverlayService

updateTransparency

public void updateTransparency()

Specified by:

updateTransparency in interface FilamentOverlayService

updateLineWidth

public void updateLineWidth()

Specified by:

updateLineWidth in interface FilamentOverlayService

setViewMode

public void setViewMode(ImageDisplayMode viewMode)

Specified by:

setViewMode in interface FilamentOverlayService

autoScaleImage

public void autoScaleImage()

Specified by:

autoScaleImage in interface FilamentOverlayService