Module sc.fiji.filamentdetector

Package sc.fiji.filamentdetector.analyzer

Class NaiveNucleationAnalyzer

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

sc.fiji.filamentdetector.analyzer.AbstractAnalyzer

sc.fiji.filamentdetector.analyzer.NaiveNucleationAnalyzer

All Implemented Interfaces:

Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Named, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.Versioned, Analyzer

public class NaiveNucleationAnalyzer
extends AbstractAnalyzer

Field Summary

Fields

Modifier and Type	Field	Description
static String	DESCRIPTION
static String	NAME

Fields inherited from class sc.fiji.filamentdetector.analyzer.AbstractAnalyzer

description, filamentWorkflow, name, resultMessage, results, saveResults

Constructor Summary

Constructors

Constructor	Description
NaiveNucleationAnalyzer()

Method Summary

Modifier and Type	Method	Description
void	analyze()
String	getAnalyzerInfo()
int	getChannelIndex()
double	getIntensityThreshold()
double	getLineLength()
double	getLineThickness()
int	getMaxFrame()
double	getPixelSpacing()
<T extends net.imglib2.type.numeric.RealType<T>> void	guessIntensityThresholdFromImage()
boolean	isColorizedNucleatedSeeds()
void	setChannelIndex(int channelIndex)
void	setColorizedNucleatedSeeds(boolean colorizedNucleatedSeeds)
void	setIntensityThreshold(double intensityThreshold)
void	setLineLength(double lineLength)
void	setLineThickness(double lineThickness)
void	setMaxFrame(int maxFrame)
void	setPixelSpacing(double pixelSpacing)

Methods inherited from class sc.fiji.filamentdetector.analyzer.AbstractAnalyzer

getDescription, getFilamentWorkflow, getName, getResultMessage, getResults, isSaveResults, setDescription, setFilamentWorkflow, setName, setSaveResults, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier, log

Methods inherited from interface org.scijava.Versioned

getVersion

Field Detail

NAME

public static String NAME

DESCRIPTION

public static String DESCRIPTION

Constructor Detail

NaiveNucleationAnalyzer

public NaiveNucleationAnalyzer()

Method Detail

getAnalyzerInfo

public String getAnalyzerInfo()

analyze

public void analyze()

getPixelSpacing

public double getPixelSpacing()

setPixelSpacing

public void setPixelSpacing(double pixelSpacing)

getLineThickness

public double getLineThickness()

setLineThickness

public void setLineThickness(double lineThickness)

getIntensityThreshold

public double getIntensityThreshold()

setIntensityThreshold

public void setIntensityThreshold(double intensityThreshold)

getMaxFrame

public int getMaxFrame()

setMaxFrame

public void setMaxFrame(int maxFrame)

getChannelIndex

public int getChannelIndex()

setChannelIndex

public void setChannelIndex(int channelIndex)

getLineLength

public double getLineLength()

setLineLength

public void setLineLength(double lineLength)

isColorizedNucleatedSeeds

public boolean isColorizedNucleatedSeeds()

setColorizedNucleatedSeeds

public void setColorizedNucleatedSeeds(boolean colorizedNucleatedSeeds)

guessIntensityThresholdFromImage

public <T extends net.imglib2.type.numeric.RealType<T>> void guessIntensityThresholdFromImage()