Uses of Class
net.preibisch.mvrecon.fiji.spimdata.interestpoints.InterestPoint
Packages that use InterestPoint
Package
Description
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Uses of InterestPoint in net.preibisch.mvrecon.fiji.plugin.interestpointdetection
Methods in net.preibisch.mvrecon.fiji.plugin.interestpointdetection that return types with arguments of type InterestPointModifier and TypeMethodDescriptionDifferenceOfGaussianGUI.findInterestPoints(mpicbg.spim.data.sequence.TimePoint t) abstract HashMap<mpicbg.spim.data.sequence.ViewId, List<InterestPoint>> InterestPointDetectionGUI.findInterestPoints(mpicbg.spim.data.sequence.TimePoint tp) -
Uses of InterestPoint in net.preibisch.mvrecon.fiji.plugin.interestpointregistration.pairwise
Methods in net.preibisch.mvrecon.fiji.plugin.interestpointregistration.pairwise that return types with arguments of type InterestPointModifier and TypeMethodDescriptionCenterOfMassGUI.pairwiseMatchingInstance()FRGLDMGUI.pairwiseMatchingInstance()GeometricHashingGUI.pairwiseMatchingInstance()IterativeClosestPointGUI.pairwiseMatchingInstance()LoadCorrespondencesGUI.pairwiseMatchingInstance()abstract MatcherPairwise<InterestPoint> PairwiseGUI.pairwiseMatchingInstance()RGLDMGUI.pairwiseMatchingInstance() -
Uses of InterestPoint in net.preibisch.mvrecon.fiji.spimdata.interestpoints
Subclasses of InterestPoint in net.preibisch.mvrecon.fiji.spimdata.interestpointsMethods in net.preibisch.mvrecon.fiji.spimdata.interestpoints that return InterestPointModifier and TypeMethodDescriptionInterestPoint.clone()InterestPoint.duplicate()InterestPoint.newInstance(int id, double[] l) Methods in net.preibisch.mvrecon.fiji.spimdata.interestpoints that return types with arguments of type InterestPointModifier and TypeMethodDescriptionabstract Map<Integer, InterestPoint> InterestPoints.getInterestPointsCopy()InterestPointsN5.getInterestPointsCopy()Method parameters in net.preibisch.mvrecon.fiji.spimdata.interestpoints with type arguments of type InterestPointModifier and TypeMethodDescriptionvoidInterestPoints.setInterestPoints(Collection<InterestPoint> list) protected abstract voidInterestPoints.setInterestPointsLocal(Collection<InterestPoint> list) protected voidInterestPointsN5.setInterestPointsLocal(Collection<InterestPoint> collection) -
Uses of InterestPoint in net.preibisch.mvrecon.process.downsampling
Method parameters in net.preibisch.mvrecon.process.downsampling with type arguments of type InterestPointModifier and TypeMethodDescriptionstatic voidDownsampleTools.correctForDownsampling(List<InterestPoint> ips, net.imglib2.realtransform.AffineTransform3D t) -
Uses of InterestPoint in net.preibisch.mvrecon.process.fusion.transformed.nonrigid
Methods in net.preibisch.mvrecon.process.fusion.transformed.nonrigid that return InterestPointMethods in net.preibisch.mvrecon.process.fusion.transformed.nonrigid that return types with arguments of type InterestPointConstructors in net.preibisch.mvrecon.process.fusion.transformed.nonrigid with parameters of type InterestPointModifierConstructorDescriptionCorrespondingIP(InterestPoint ip, mpicbg.spim.data.sequence.ViewId viewId, InterestPoint corrIp, mpicbg.spim.data.sequence.ViewId corrViewId) Constructor parameters in net.preibisch.mvrecon.process.fusion.transformed.nonrigid with type arguments of type InterestPoint -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointdetection
Methods in net.preibisch.mvrecon.process.interestpointdetection that return types with arguments of type InterestPointModifier and TypeMethodDescriptionstatic ArrayList<InterestPoint> Localization.computeGaussLocalization(ArrayList<SimplePeak> peaks, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> domImg, double sigma, boolean findMin, boolean findMax, float threshold, boolean keepIntensity) static ArrayList<InterestPoint> Localization.computeQuadraticLocalization(ArrayList<SimplePeak> peaks, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> dogImg, net.imglib2.Interval validInterval, boolean findMin, boolean findMax, float threshold, boolean keepIntensity, ExecutorService ex) static List<InterestPoint> InterestPointTools.limitList(int maxDetections, int maxDetectionsTypeIndex, List<InterestPoint> list) static ArrayList<InterestPoint> Localization.noLocalization(ArrayList<SimplePeak> peaks, boolean findMin, boolean findMax, boolean keepIntensity) Method parameters in net.preibisch.mvrecon.process.interestpointdetection with type arguments of type InterestPointModifier and TypeMethodDescriptionstatic booleanInterestPointTools.addInterestPoints(SpimData2 data, String label, HashMap<mpicbg.spim.data.sequence.ViewId, List<InterestPoint>> points) Add interest points.static booleanInterestPointTools.addInterestPoints(SpimData2 data, String label, HashMap<mpicbg.spim.data.sequence.ViewId, List<InterestPoint>> points, String parameters) Add interest points.static List<InterestPoint> InterestPointTools.limitList(int maxDetections, int maxDetectionsTypeIndex, List<InterestPoint> list) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointdetection.methods.dog
Methods in net.preibisch.mvrecon.process.interestpointdetection.methods.dog that return types with arguments of type InterestPointModifier and TypeMethodDescriptionstatic <T extends net.imglib2.type.numeric.RealType<T>>
ArrayList<InterestPoint> DoGImgLib2.computeDoG(net.imglib2.RandomAccessible<T> input, net.imglib2.RandomAccessible<T> mask, net.imglib2.Interval interval, double sigma, double threshold, int localization, boolean findMin, boolean findMax, double minIntensity, double maxIntensity, int[] blockSize, ExecutorService service, CUDASeparableConvolution cuda, CUDADevice cudaDevice, boolean accurateCUDA, double percentGPUMem) static <T extends net.imglib2.type.numeric.RealType<T>>
ArrayList<InterestPoint> DoGImgLib2.computeDoG(net.imglib2.RandomAccessible<T> input, net.imglib2.RandomAccessible<T> mask, net.imglib2.Interval interval, double sigma, double threshold, int localization, boolean findMin, boolean findMax, double minIntensity, double maxIntensity, ExecutorService service) static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
List<InterestPoint> DoG.findInterestPoints(net.imglib2.RandomAccessibleInterval<T> input, double sigma, double threshold, boolean findMin, boolean findMax, double minIntensity, double maxIntensity, ExecutorService service) DoG.findInterestPoints(DoGParameters dog) Method parameters in net.preibisch.mvrecon.process.interestpointdetection.methods.dog with type arguments of type InterestPointModifier and TypeMethodDescriptionstatic voidDoG.addInterestPoints(HashMap<mpicbg.spim.data.sequence.ViewId, List<InterestPoint>> interestPoints, DoGParameters dog) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration
Methods in net.preibisch.mvrecon.process.interestpointregistration that return types with arguments of type InterestPointModifier and TypeMethodDescriptionstatic Collection<InterestPoint> TransformationTools.applyTransformation(Collection<InterestPoint> list, net.imglib2.realtransform.AffineTransform3D m) static HashMap<String, Collection<InterestPoint>> TransformationTools.applyTransformation(HashMap<String, Collection<InterestPoint>> lists, net.imglib2.realtransform.AffineTransform3D m) static <V> Map<V, HashMap<String, Collection<InterestPoint>>> TransformationTools.getAllInterestPoints(Collection<? extends V> viewIds, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, HashMap<String, Double>> labelMap, boolean transform) static <V> Map<V, HashMap<String, Collection<InterestPoint>>> TransformationTools.getAllInterestPoints(Collection<? extends V> viewIds, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, HashMap<String, Double>> labelMap, boolean transform, int numThreads) static <V> Map<V, HashMap<String, Collection<InterestPoint>>> TransformationTools.getAllTransformedInterestPoints(Collection<? extends V> viewIds, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, HashMap<String, Double>> labelMap) static <V> Collection<InterestPoint> TransformationTools.getCorrespondingInterestPoints(V viewId, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, String> labelMap, boolean transform) static <V> HashMap<String, Collection<InterestPoint>> TransformationTools.getInterestPoints(V viewId, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, HashMap<String, Double>> labelMap, boolean transform) static <V> HashMap<String, Collection<InterestPoint>> TransformationTools.getInterestPoints(V viewId, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, HashMap<String, Double>> labelMap, boolean transform, ConcurrentHashMap<String, ConcurrentLinkedQueue<V>> missingInterestPoints) static <V> Collection<InterestPoint> TransformationTools.getTransformedCorrespondingInterestPoints(V viewId, Map<V, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<V, ViewInterestPointLists> interestpoints, Map<V, String> labelMap) Method parameters in net.preibisch.mvrecon.process.interestpointregistration with type arguments of type InterestPointModifier and TypeMethodDescriptionstatic Collection<InterestPoint> TransformationTools.applyTransformation(Collection<InterestPoint> list, net.imglib2.realtransform.AffineTransform3D m) static HashMap<String, Collection<InterestPoint>> TransformationTools.applyTransformation(HashMap<String, Collection<InterestPoint>> lists, net.imglib2.realtransform.AffineTransform3D m) static voidTransformationTools.filterForOverlappingInterestPoints(Map<mpicbg.spim.data.sequence.ViewId, HashMap<String, Collection<InterestPoint>>> interestpoints, Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups, Map<mpicbg.spim.data.sequence.ViewId, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<mpicbg.spim.data.sequence.ViewId, mpicbg.spim.data.sequence.ViewDescription> viewDescriptions) static voidTransformationTools.filterForOverlappingInterestPoints(Map<mpicbg.spim.data.sequence.ViewId, HashMap<String, Collection<InterestPoint>>> interestpoints, Collection<? extends Group<mpicbg.spim.data.sequence.ViewId>> groups, Map<mpicbg.spim.data.sequence.ViewId, mpicbg.spim.data.registration.ViewRegistration> registrations, Map<mpicbg.spim.data.sequence.ViewId, mpicbg.spim.data.sequence.ViewDescription> viewDescriptions, int numThreads) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise with type parameters of type InterestPointModifier and TypeInterfaceDescriptioninterfaceMatcherPairwise<I extends InterestPoint>classPairwiseResult<I extends InterestPoint>Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise with type parameters of type InterestPointModifier and TypeMethodDescriptionstatic <I extends InterestPoint>
voidMatcherPairwiseTools.addCorrespondences(List<PointMatchGeneric<I>> correspondences, List<Integer> setIds, mpicbg.spim.data.sequence.ViewId viewIdA, mpicbg.spim.data.sequence.ViewId viewIdB, String labelA, String labelB, InterestPoints listA, InterestPoints listB) static <I extends InterestPoint>
voidMatcherPairwiseTools.addCorrespondences(List<PointMatchGeneric<I>> correspondences, mpicbg.spim.data.sequence.ViewId viewIdA, mpicbg.spim.data.sequence.ViewId viewIdB, String labelA, String labelB, InterestPoints listA, InterestPoints listB) static <V,I extends InterestPoint>
List<net.imglib2.util.Pair<net.imglib2.util.Pair<V, V>, PairwiseResult<I>>> MatcherPairwiseTools.computePairs(List<net.imglib2.util.Pair<V, V>> pairs, Map<V, ? extends Map<String, ? extends Collection<I>>> interestpoints, MatcherPairwise<I> matcher, boolean matchAcrossLabels, ExecutorService exec) static <V,I extends InterestPoint>
List<net.imglib2.util.Pair<net.imglib2.util.Pair<V, V>, PairwiseResult<I>>> MatcherPairwiseTools.computePairs(List<net.imglib2.util.Pair<V, V>> pairs, Map<V, HashMap<String, Collection<I>>> interestpoints, MatcherPairwise<I> matcher, boolean matchAcrossLabels) static <V,I extends InterestPoint>
ArrayList<Callable<net.imglib2.util.Pair<net.imglib2.util.Pair<V, V>, PairwiseResult<I>>>> MatcherPairwiseTools.getCallables(List<MatcherPairwiseTools.MatchingTask<V>> tasks, Map<V, ? extends Map<String, ? extends Collection<I>>> interestpoints, MatcherPairwise<I> matcher) static <V,I extends InterestPoint>
ArrayList<MatcherPairwiseTools.MatchingTask<V>> MatcherPairwiseTools.getTasksList(List<net.imglib2.util.Pair<V, V>> pairs, Map<V, ? extends Map<String, ?>> interestpoints, boolean matchAcrossLabels) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping
Subclasses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.groupingModifier and TypeClassDescriptionclassSingle interest point, extends InterestPoint to remember where it came from for groupingMethod parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping with type arguments of type InterestPointModifier and TypeMethodDescriptionprotected abstract HashMap<String, Collection<GroupedInterestPoint<V>>> InterestPointGrouping.merge(Map<V, HashMap<String, Collection<InterestPoint>>> toMerge) protected HashMap<String, Collection<GroupedInterestPoint<V>>> InterestPointGroupingAll.merge(Map<V, HashMap<String, Collection<InterestPoint>>> toMerge) protected HashMap<String, Collection<GroupedInterestPoint<V>>> InterestPointGroupingMinDistance.merge(Map<V, HashMap<String, Collection<InterestPoint>>> toMerge) static <V extends mpicbg.spim.data.sequence.ViewId>
HashMap<String, Collection<GroupedInterestPoint<V>>> InterestPointGroupingAll.mergeAll(Map<V, HashMap<String, Collection<InterestPoint>>> toMerge) Constructor parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping with type arguments of type InterestPointModifierConstructorDescriptionInterestPointGrouping(Map<V, HashMap<String, Collection<InterestPoint>>> interestpoints) InterestPointGroupingAll(Map<V, HashMap<String, Collection<InterestPoint>>> interestpoints) InterestPointGroupingMinDistance(double radius, Map<V, HashMap<String, Collection<InterestPoint>>> interestpoints) InterestPointGroupingMinDistance(Map<V, HashMap<String, Collection<InterestPoint>>> interestpoints) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.centerofmass
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.centerofmass with type parameters of type InterestPoint -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.fastrgldm
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.fastrgldm with type parameters of type InterestPointModifier and TypeClassDescriptionclassFRGLDMMatcher<I extends InterestPoint>classFRGLDMPairwise<I extends InterestPoint>Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.fastrgldm with type parameters of type InterestPointModifier and TypeMethodDescriptionstatic <I extends InterestPoint>
ArrayList<TranslationInvariantLocalCoordinateSystemPointDescriptor<I>> FRGLDMMatcher.createLocalCoordinateSystemPointDescriptors(net.imglib2.KDTree<I> tree, Collection<I> basisPoints, int redundancy) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.geometrichashing
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.geometrichashing with type parameters of type InterestPointModifier and TypeClassDescriptionclassGeometricHasher<I extends InterestPoint>Class that actually computes the geometric hashingclassGeometricHashingPairwise<I extends InterestPoint>Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.geometrichashing with type parameters of type InterestPointModifier and TypeMethodDescriptionstatic <I extends InterestPoint>
ArrayList<LocalCoordinateSystemPointDescriptor<I>> GeometricHasher.createLocalCoordinateSystemPointDescriptors(net.imglib2.KDTree<I> tree, Collection<I> basisPoints, int redundancy, boolean normalize) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.icp
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.icp with type parameters of type InterestPointModifier and TypeClassDescriptionclassIterativeClosestPointPairwise<I extends InterestPoint>Iterative closest point implementationMethods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.icp with type parameters of type InterestPointModifier and TypeMethodDescriptionstatic <I extends InterestPoint>
voidIterativeClosestPointPairwise.failWith(PairwiseResult<I> result, String algo, String exType, Exception e) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.loadcorrespondences
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.loadcorrespondences with type parameters of type InterestPoint -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.ransac
Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.ransac with type parameters of type InterestPointModifier and TypeMethodDescriptionstatic <I extends InterestPoint>
ImgLib2Temp.Pair<String, Double> RANSAC.computeRANSAC(ArrayList<PointMatchGeneric<I>> correspondenceCandidates, ArrayList<PointMatchGeneric<I>> inlierList, ArrayList<Integer> setIdList, mpicbg.models.Model<?> model, double maxEpsilon, double minInlierRatio, int minNumMatches, int numIterations, boolean multiConsensus, double maxTrust, boolean filterRansac) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.rgldm
Classes in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.rgldm with type parameters of type InterestPointModifier and TypeClassDescriptionclassRGLDMMatcher<I extends InterestPoint>classRGLDMPairwise<I extends InterestPoint>Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.methods.rgldm with type parameters of type InterestPointModifier and TypeMethodDescriptionprotected static <I extends InterestPoint>
ArrayList<SimplePointDescriptor<I>> RGLDMMatcher.createSimplePointDescriptors(net.imglib2.KDTree<I> tree, List<I> basisPoints, int numNeighbors, Matcher matcher, SimilarityMeasure similarityMeasure) protected static final <I extends InterestPoint,D extends AbstractPointDescriptor<I, D>>
ArrayList<PointMatchGeneric<I>> RGLDMMatcher.findCorrespondingDescriptors(ArrayList<D> descriptorsA, ArrayList<D> descriptorsB, double nTimesBetter, double differenceThreshold, boolean limitSearchRadius, double searchRadius) -
Uses of InterestPoint in net.preibisch.mvrecon.process.interestpointremoval
Fields in net.preibisch.mvrecon.process.interestpointremoval with type parameters of type InterestPointModifier and TypeFieldDescriptionprotected Map<Integer, InterestPoint> InteractiveProjections.ipMapMethods in net.preibisch.mvrecon.process.interestpointremoval that return types with arguments of type InterestPointMethod parameters in net.preibisch.mvrecon.process.interestpointremoval with type arguments of type InterestPointModifier and TypeMethodDescriptionprotected static voidInteractiveProjections.drawProjectedInterestPoints(ij.ImagePlus imp, Collection<InterestPoint> ipList, int projectionDim) Constructor parameters in net.preibisch.mvrecon.process.interestpointremoval with type arguments of type InterestPointModifierConstructorDescriptionRemoveInsideROIButtonListener(ij.ImagePlus imp, Map<Integer, InterestPoint> ipMap, int projectionDim, boolean inside) -
Uses of InterestPoint in net.preibisch.mvrecon.process.pointcloud.pointdescriptor.test
Methods in net.preibisch.mvrecon.process.pointcloud.pointdescriptor.test that return InterestPoint