Package net.preibisch.mvrecon.fiji.plugin.interestpointdetection

Class InterestPointDetectionGUI

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.interestpointdetection.InterestPointDetectionGUI

Direct Known Subclasses:

DifferenceOfGUI

public abstract class InterestPointDetectionGUI
extends Object

Constructor Summary

Constructors

Constructor	Description
InterestPointDetectionGUI(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)

Method Summary

Modifier and Type	Method	Description
abstract HashMap<mpicbg.spim.data.sequence.ViewId,List<InterestPoint>>	findInterestPoints(mpicbg.spim.data.sequence.TimePoint tp)
abstract String	getDescription()
abstract String	getParameters()
List<mpicbg.spim.data.sequence.ViewId>	getViewIdsToProcess()
abstract InterestPointDetectionGUI	newInstance(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)
abstract void	preprocess()	if any preprocessing is necessary
abstract boolean	queryParameters(boolean defineAnisotropy, boolean setMinMax, boolean limitDetections, boolean groupTiles, boolean groupIllums)	Query the necessary parameters for the interestpoint detection

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

InterestPointDetectionGUI

public InterestPointDetectionGUI(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)

Parameters:

spimData - - the SpimData

viewIdsToProcess - - which view id's to segment

Method Details

getViewIdsToProcess

public List<mpicbg.spim.data.sequence.ViewId> getViewIdsToProcess()

preprocess

public abstract void preprocess()

if any preprocessing is necessary

findInterestPoints

public abstract HashMap<mpicbg.spim.data.sequence.ViewId,List<InterestPoint>> findInterestPoints(mpicbg.spim.data.sequence.TimePoint tp)

queryParameters

public abstract boolean queryParameters(boolean defineAnisotropy,
 boolean setMinMax,
 boolean limitDetections,
 boolean groupTiles,
 boolean groupIllums)

Query the necessary parameters for the interestpoint detection

Parameters:

defineAnisotropy - - whether to use/query for anisotropy in resolution of the data

setMinMax - - whether to define minimal and maximal intensity relative to whom everything is normalized to [0...1]

limitDetections - - offers the chance to select certain detections only based on their intensity

groupTiles - - if grouping of tiles is wanted

groupIllums - - if grouping of illums is wanted

Returns:

- if it was successful

newInstance

public abstract InterestPointDetectionGUI newInstance(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)

getDescription

public abstract String getDescription()

getParameters

public abstract String getParameters()