Package | Description |
---|---|
loci.visbio | |
loci.visbio.data | |
loci.visbio.ext | |
loci.visbio.help | |
loci.visbio.overlays | |
loci.visbio.state | |
loci.visbio.view |
Modifier and Type | Class and Description |
---|---|
class |
ConsoleManager
ConsoleManager is the manager encapsulating VisBio's console output logic.
|
class |
ExitManager
ExitManager is the manager encapsulating VisBio's shutdown logic.
|
class |
LogicManager
LogicManager is the superclass of all VisBio logic handlers.
|
class |
PanelManager
PanelManager is the manager encapsulating VisBio's control panel logic.
|
class |
SystemManager
SystemManager is the manager encapsulating VisBio's system information report
logic.
|
class |
TaskManager
TaskManager is the manager encapsulating VisBio's multitasking logic.
|
class |
WindowManager
WindowManager is the manager encapsulating VisBio's window logic, including
docking, resizing, minimization and cursor control.
|
Modifier and Type | Class and Description |
---|---|
class |
ArbitrarySlice
A transform for slicing a stack of images in 3D.
|
class |
CollapseTransform
CollapseTransform converts a dimensional axis into a series of range
components.
|
class |
DataManager
DataManager is the manager encapsulating VisBio's data transform logic.
|
class |
DataSampling
DataSampling is a resampling of another transform.
|
class |
Dataset
A Dataset object encompasses a multidimensional biological image series.
|
class |
DataTransform
DataTransform is the superclass of all data transform types.
|
class |
ImageTransform
ImageTransform is a DataTransform superclass that provides image data.
|
class |
ProjectionTransform
ProjectionTransform performs a maximum intensity projection across a given
dimensional axis.
|
class |
SpectralTransform
SpectralTransform is a mapping of spectral bands onto an RGB or grayscale
color space, as specified by the user with weighted sliders.
|
Modifier and Type | Class and Description |
---|---|
class |
ExternalFunction
ExternalFunction is an abstract transform that calls some form of external
function.
|
class |
ExternalProgram
ExternalProgram is a transform that uses system calls to an external program
to evaluate a function, using stdin and stdout for binary data transfer.
|
class |
ExtManager
ExtManager is the manager encapsulating VisBio's support for external
software interfaces (e.g., external programs or MATLAB).
|
class |
MatlabFunction
MatlabFunction executes a MATLAB script or function on a data object.
|
Modifier and Type | Class and Description |
---|---|
class |
HelpManager
HelpManager is the manager encapsulating VisBio's help window logic.
|
Modifier and Type | Class and Description |
---|---|
class |
OverlayManager
OverlayManager is the manager encapsulating VisBio's overlay logic.
|
class |
OverlayTransform
A set of overlays on top another transform.
|
Modifier and Type | Class and Description |
---|---|
class |
BioOption
BioOption represents an option in the VisBio Options dialog.
|
class |
BooleanOption
BooleanOption is a true-or-false option in the VisBio Options dialog.
|
class |
CustomOption
CustomOption is an option in the VisBio Options dialog.
|
class |
ListOption
ListOption is an option from a list in the VisBio Options dialog.
|
class |
NumericOption
NumericOption is an integer option in the VisBio Options dialog.
|
class |
OptionManager
OptionManager is the manager encapsulating VisBio's options.
|
class |
ResolutionOption
ResolutionOption is an option for changing image resolution (two positive
integers) in the VisBio Options dialog.
|
class |
ResolutionToggleOption
ResolutionToggleOption is an option for toggling image resolution (two
positive integers) in the VisBio Options dialog.
|
class |
SpreadsheetLaunchOption
Option to toggle whether spreadsheet automatically launches when overlays are
exported.
|
class |
StateManager
StateManager is the manager encapsulating VisBio's state logic.
|
class |
StringOption
StringOption is a user-supplied string option in the VisBio Options dialog.
|
Modifier and Type | Class and Description |
---|---|
class |
CaptureHandler
Provides logic for capturing display screenshots and movies.
|
class |
DisplayManager
DisplayManager is the manager encapsulating VisBio's 2D and 3D displays.
|
class |
DisplayPosition
DisplayPosition represents an orientation of VisAD display.
|
class |
DisplayWindow
DisplayWindow is a window containing a 2D or 3D VisAD display and associated
controls.
|
class |
StackHandler
Provides logic for linking data transforms to a 3D display as a stack of
images.
|
class |
StackLink
Represents a link between a data transform and a display that produces an
image stack.
|
class |
TransformHandler
Provides logic for linking data transforms to a display.
|
class |
TransformLink
Represents a link between a data transform and a display that produces a
single image.
|
class |
ViewHandler
Provides logic for controlling a VisAD display's view.
|
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