| Package | Description |
|---|---|
| mpicbg.spim.data | |
| spim.fiji.datasetmanager | |
| spim.fiji.plugin | |
| spim.fiji.spimdata |
| Modifier and Type | Method and Description |
|---|---|
static SequenceDescription |
SpimDataExample2.createSequenceDescription() |
| Constructor and Description |
|---|
SpimData(File basePath,
SequenceDescription sequenceDescription,
ViewRegistrations viewRegistrations) |
| Modifier and Type | Method and Description |
|---|---|
protected StackImgLoader<?> |
StackListLOCI.createAndInitImgLoader(String path,
File basePath,
ImgFactory<? extends NativeType<?>> imgFactory,
SequenceDescription sequenceDescription) |
protected StackImgLoader |
StackListImageJ.createAndInitImgLoader(String path,
File basePath,
ImgFactory<? extends NativeType<?>> imgFactory,
SequenceDescription sequenceDescription) |
protected abstract StackImgLoader |
StackList.createAndInitImgLoader(String path,
File basePath,
ImgFactory<? extends NativeType<?>> imgFactory,
SequenceDescription sequenceDescription)
Instantiate the
ImgLoader |
| Modifier and Type | Method and Description |
|---|---|
static double |
Apply_Transformation.assembleAllMetaData(SequenceDescription sequenceDescription,
Collection<? extends ViewId> viewIdsToProcess)
Should be called before registration to make sure all metadata is right
|
| Modifier and Type | Method and Description |
|---|---|
static ViewId |
SpimData2.getViewId(SequenceDescription seqDesc,
TimePoint t,
Channel c,
Angle a,
Illumination i) |
| Constructor and Description |
|---|
SpimData2(File basePath,
SequenceDescription sequenceDescription,
ViewRegistrations viewRegistrations,
ViewInterestPoints viewsInterestPoints,
BoundingBoxes boundingBoxes) |
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