Modifier and Type | Class and Description |
---|---|
class |
LocalizablePoint
TODO
|
Modifier and Type | Method and Description |
---|---|
double[] |
GaussianPeakFitterND.process(Localizable point,
double[] typical_sigma)
Fit an elliptical gaussian to a peak in the image, using the formula:
|
Modifier and Type | Class and Description |
---|---|
class |
DifferenceOfGaussianPeak<T extends NumericType<T>>
TODO
|
Modifier and Type | Interface and Description |
---|---|
interface |
LocalizableByDim
TODO
|
interface |
LocalizableByDimCursor<T extends Type<T>>
TODO
|
interface |
LocalizableByDimCursor3D<T extends Type<T>>
TODO
|
interface |
LocalizableCursor<T extends Type<T>>
TODO
|
interface |
LocalizableCursor3D<T extends Type<T>>
TODO
|
interface |
LocalizablePlane
TODO
|
interface |
LocalizablePlaneCursor<T extends Type<T>>
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
LocalizableByDim.moveTo(Localizable localizable) |
void |
LocalizableByDim.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
Array3DLocalizableByDimCursor<T extends Type<T>>
TODO
|
class |
Array3DLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
Array3DLocalizableCursor<T extends Type<T>>
TODO
|
class |
ArrayLocalizableByDimCursor<T extends Type<T>>
TODO
|
class |
ArrayLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
ArrayLocalizableCursor<T extends Type<T>>
TODO
|
class |
ArrayLocalizablePlaneCursor<T extends Type<T>>
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
ArrayLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
ArrayLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
CellLocalizableByDimCursor<T extends Type<T>>
TODO
|
class |
CellLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
CellLocalizableCursor<T extends Type<T>>
TODO
|
class |
CellLocalizablePlaneCursor<T extends Type<T>>
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
CellLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
CellLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
ConstantLocalizableByDimCursor<T extends Type<T>>
A simple
LocalizableByDimCursor that always returns the same value at each position. |
class |
ConstantLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
A simple
LocalizableByDimCursorOutOfBoundsCursor that always returns the same value at each position. |
class |
ConstantLocalizableCursor<T extends Type<T>>
A simple LocalizableCursor that always returns the same value at each location, but iterates the right amount of
pixels relative to its size and localizes itself properly.
|
class |
ConstantLocalizablePlaneCursor<T extends Type<T>>
A simple
LocalizablePlaneCursor that always returns the same value at each position. |
Modifier and Type | Method and Description |
---|---|
void |
ConstantLocalizableByDimOutOfBoundsCursor.moveTo(Localizable localizable) |
void |
ConstantLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
ConstantLocalizableByDimOutOfBoundsCursor.setPosition(Localizable localizable) |
void |
ConstantLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
DynamicLocalizableByDimCursor<T extends Type<T>>
TODO
|
class |
DynamicLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
DynamicLocalizableCursor<T extends Type<T>>
TODO
|
class |
DynamicLocalizablePlaneCursor<T extends Type<T>>
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
DynamicLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
DynamicLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
ImagePlusLocalizableByDimCursor<T extends Type<T>>
Positionable for a
ImagePlusContainers |
class |
ImagePlusLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
Positionable with OutOfBoundsStrategy for a
ImagePlusContainers |
class |
ImagePlusLocalizableCursor<T extends Type<T>>
Localizing Iterator for a
ImagePlusContainers |
class |
ImagePlusLocalizablePlaneCursor<T extends Type<T>> |
Modifier and Type | Interface and Description |
---|---|
interface |
CursorLink
TODO
|
Modifier and Type | Class and Description |
---|---|
class |
GenericCursorLink<T extends Type<T>>
TODO
|
class |
NullLink
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
NullLink.moveTo(Localizable localizable) |
void |
GenericCursorLink.moveTo(Localizable localizable) |
void |
NullLink.setPosition(Localizable localizable) |
void |
GenericCursorLink.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
PlanarLocalizableByDimCursor<T extends Type<T>>
Positionable for a
PlanarContainers |
class |
PlanarLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
Positionable with OutOfBoundsStrategy for a
PlanarContainers |
class |
PlanarLocalizableCursor<T extends Type<T>>
Localizing Iterator for a
PlanarContainers |
class |
PlanarLocalizablePlaneCursor<T extends Type<T>> |
Modifier and Type | Method and Description |
---|---|
void |
PlanarLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
PlanarLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
ShapeListCachedLocalizableByDimCursor<T extends Type<T>>
TODO
|
class |
ShapeListCachedLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
ShapeListCachedLocalizablePlaneCursor<T extends Type<T>>
TODO
|
class |
ShapeListLocalizableByDimCursor<T extends Type<T>> |
class |
ShapeListLocalizableByDimOutOfBoundsCursor<T extends Type<T>>
TODO
|
class |
ShapeListLocalizablePlaneCursor<T extends Type<T>>
TODO
|
Modifier and Type | Method and Description |
---|---|
void |
ShapeListLocalizableByDimOutOfBoundsCursor.moveTo(Localizable localizable) |
void |
ShapeListLocalizableByDimCursor.moveTo(Localizable localizable) |
void |
ShapeListLocalizableByDimOutOfBoundsCursor.setPosition(Localizable localizable) |
void |
ShapeListLocalizableByDimCursor.setPosition(Localizable localizable) |
Modifier and Type | Class and Description |
---|---|
class |
AbstractSortedGrayLevelIterator<T extends IntegerType<T>>
Iterate over all pixels ordered by their gray level
|
class |
AbstractSpecialCursor<T extends Type<T>>
This abstract cursor offer facilities for specialized cursor that are based
on a
LocalizableByDimCursor whose iteration domain is imposed. |
class |
CoordsCursor<T extends Type<T>>
Abstract cursor that offers facilities to move the cursor origin (whatever this means
for the concrete implementation) by giving physical coordinates, converted
using a calibration
float[] array. |
class |
DiscCursor<T extends RealType<T>>
TODO
|
class |
DomainCursor<T extends Type<T>>
Abstract class for
CoordsCursor s that iterate over a domain which size can be
determined by a single parameter. |
class |
HyperSphereIterator<T extends Type<T>>
Iterate over all pixels in an n-dimensional sphere.
|
class |
RegionOfInterestCursor<T extends Type<T>>
TODO
|
class |
SortedGrayLevelIteratorAllContainers<T extends IntegerType<T>>
Iterate over all pixels ordered by their gray level
|
class |
SortedGrayLevelIteratorArrayContainerOnly<T extends IntegerType<T>>
Iterate over all pixels ordered by their gray level
|
class |
SphereCursor<T extends Type<T>>
This class implements a
LocalizableCursor that iterates over all the pixel within the volume
of a 3D ball, whose center and radius are given at construction. |
Modifier and Type | Field and Description |
---|---|
protected Localizable |
HyperSphereIterator.center |
Modifier and Type | Method and Description |
---|---|
void |
CoordsCursor.moveCenterTo(Localizable localizable)
Move the center of the sphere to the location specified by the
Localizable object. |
Constructor and Description |
---|
DiscCursor(Image<T> img,
Localizable centerCursor,
float radius)
Construct a
DiscCursor on an, using the spatial calibration
stored in the image and a default OutOfBoundsStrategyValueFactory
to handle off-bounds locations. |
DiscCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration)
Construct a
DiscCursor on an image, using the given spatial calibration
and a default OutOfBoundsStrategyValueFactory
to handle off-bounds locations. |
DiscCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
DiscCursor on an image with a given spatial calibration
and a given OutOfBoundsStrategyFactory to handle off-bounds locations. |
HyperSphereIterator(Image<T> image,
Localizable center,
int radius) |
HyperSphereIterator(Image<T> image,
Localizable center,
int radius,
OutOfBoundsStrategyFactory<T> oobFactory) |
SphereCursor(Image<T> img,
Localizable centerCursor,
float radius)
Construct a
SphereCursor on a 3D image, using the spatial calibration
stored in the image and a default OutOfBoundsStrategyValueFactory
to handle off-bounds locations. |
SphereCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration)
Construct a
SphereCursor on a 3D image, using the given spatial calibration
and a default OutOfBoundsStrategyValueFactory
to handle off-bounds locations. |
SphereCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
SphereCursor on a 3D image with a given spatial calibration
and a given OutOfBoundsStrategyFactory to handle off-bounds locations. |
Modifier and Type | Class and Description |
---|---|
class |
LocalizableLabelingCursor<T extends Comparable<T>>
A cursor that only visits labeled pixels.
|
class |
LocalizableLabelingPerimeterCursor<T extends Comparable<T>>
TODO
|
Modifier and Type | Class and Description |
---|---|
class |
Peak |
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