Index (Legacy ImgLib1 1.1.11 API)

A B C D E F G H I K L M N O P Q R S T U V W X Y Z

A

a() - Method in class script.imglib.math.fn.BinaryOperation
a() - Method in class script.imglib.math.fn.UnaryOperation: Call a().eval() to obtain the result as a double of the computation encapsulated by the @field a.
Abs - Class in imglib.ops.operator.unary: TODO
Abs() - Constructor for class imglib.ops.operator.unary.Abs
Abs - Class in script.imglib.math: TODO
Abs(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Abs
Abs(IFunction) - Constructor for class script.imglib.math.Abs
Abs(Number) - Constructor for class script.imglib.math.Abs
AbstractAffine3D<T extends NumericType<T>> - Class in script.imglib.algorithm.fn: TODO
AbstractAffine3D(Image<T>, float[], AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.fn.AbstractAffine3D: With a default OutOfBoundsStrategyValueFactory with @param outside.
AbstractAffine3D(Image<T>, float[], AbstractAffine3D.Mode, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.fn.AbstractAffine3D
AbstractAffine3D(Image<T>, float, float, float, float, float, float, AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.fn.AbstractAffine3D: With a default OutOfBoundsStrategyValueFactory with @param outside.
AbstractAffine3D(Image<T>, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.fn.AbstractAffine3D
AbstractAffine3D.Mode - Enum in script.imglib.algorithm.fn
AbstractNormalize<T extends NumericType<T>> - Class in script.imglib.algorithm.fn: TODO
AbstractNormalize(Image<T>) - Constructor for class script.imglib.algorithm.fn.AbstractNormalize
AbstractRegionalExtremaFinder<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.extremafinder: TODO
AbstractRegionalExtremaFinder() - Constructor for class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
AbstractSortedGrayLevelIterator<T extends IntegerType<T>> - Class in mpicbg.imglib.cursor.special: Iterate over all pixels ordered by their gray level
AbstractSortedGrayLevelIterator(Image<T>) - Constructor for class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
AbstractSpecialCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: This abstract cursor offer facilities for specialized cursor that are based on a LocalizableByDimCursor whose iteration domain is imposed.
AbstractSpecialCursor() - Constructor for class mpicbg.imglib.cursor.special.AbstractSpecialCursor
AbstractVector<V extends AbstractVector<V>> - Class in mpicbg.imglib.cursor.vector: TODO
AbstractVector(Dimensionality) - Constructor for class mpicbg.imglib.cursor.vector.AbstractVector
AbstractVector(int) - Constructor for class mpicbg.imglib.cursor.vector.AbstractVector
access - Variable in class mpicbg.imglib.labeling.LabelingType
accessor - Variable in class mpicbg.imglib.cursor.dynamic.DynamicCursor
ACos - Class in script.imglib.math: TODO
ACos(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ACos
ACos(IFunction) - Constructor for class script.imglib.math.ACos
ACos(Number) - Constructor for class script.imglib.math.ACos
activeCursorIndex - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
AdaptiveNonMaximalSuppression<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.scalespace: TODO
AdaptiveNonMaximalSuppression(List<DifferenceOfGaussianPeak<T>>, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression: Performs adaptive non maximal suppression in the local neighborhood of each detection, seperately for minima and maxima.
Add - Class in imglib.ops.operator.binary: TODO
Add() - Constructor for class imglib.ops.operator.binary.Add
add(int) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
add(V) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
add(Vector) - Method in class mpicbg.imglib.cursor.vector.Vector
add(int) - Method in class mpicbg.imglib.cursor.vector.Vector
add(Vector1d) - Method in class mpicbg.imglib.cursor.vector.Vector1d
add(int) - Method in class mpicbg.imglib.cursor.vector.Vector1d
add(Vector2d) - Method in class mpicbg.imglib.cursor.vector.Vector2d
add(int) - Method in class mpicbg.imglib.cursor.vector.Vector2d
add(Vector3d) - Method in class mpicbg.imglib.cursor.vector.Vector3d
add(int) - Method in class mpicbg.imglib.cursor.vector.Vector3d
add(Vector4d) - Method in class mpicbg.imglib.cursor.vector.Vector4d
add(int) - Method in class mpicbg.imglib.cursor.vector.Vector4d
add(T) - Method in class mpicbg.imglib.image.Image
add(BitType) - Method in class mpicbg.imglib.type.logic.BitType
add(ComplexFloatType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
add(T) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
add(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
add(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
add(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
add(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
add(T) - Method in interface mpicbg.imglib.type.numeric.NumericType
add(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
add(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
add(RGBALegacyType) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
Add - Class in script.imglib.math: TODO
Add(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Add
Add(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Add
Add(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Add
Add(IFunction, IFunction) - Constructor for class script.imglib.math.Add
Add(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Add
Add(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Add
Add(IFunction, Number) - Constructor for class script.imglib.math.Add
Add(Number, IFunction) - Constructor for class script.imglib.math.Add
Add(Number, Number) - Constructor for class script.imglib.math.Add
Add(Object...) - Constructor for class script.imglib.math.Add
addAll(Collection<? extends T>) - Method in class mpicbg.imglib.image.Image
AddConstant - Class in imglib.ops.operator.unary: TODO
AddConstant(double) - Constructor for class imglib.ops.operator.unary.AddConstant
addCursor(Cursor<T>) - Method in class mpicbg.imglib.image.Image: Adds a Cursor to the ArrayList of instantiated Cursors.
AddNoise - Class in imglib.ops.operator.unary: TODO
AddNoise(double, double, double) - Constructor for class imglib.ops.operator.unary.AddNoise
addObserver(Observer) - Method in class imglib.ops.operation.AssignOperation
addShape(Shape, T, int[]) - Method in class mpicbg.imglib.container.shapelist.ShapeList
addSlice(String, ImageProcessor) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Adds the image in 'ip' to the stack following slice 'n'.
addSlice(String, ImageProcessor) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Adds the image in 'ip' to the stack following slice 'n'.
addStatusListener(StatusListener) - Method in class mpicbg.imglib.io.ImageOpener: Adds a listener to those informed when progress occurs.
addUnsignedShortSlice(String, Object) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Obsolete.
addUnsignedShortSlice(String, Object) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Obsolete.
advance() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
advanced - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
Affine2D<N extends NumericType<N>> - Class in script.imglib.algorithm: TODO
Affine2D(Object, Number, Number, Number, Number, Number, Number) - Constructor for class script.imglib.algorithm.Affine2D: Affine transform the image with the best interpolation mode available.
Affine2D(Object, Number, Number, Number, Number, Number, Number, AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.Affine2D: Affine transform the image with the best interpolation mode available.
Affine2D(Object, AffineTransform) - Constructor for class script.imglib.algorithm.Affine2D
Affine2D(Object, AffineTransform, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Affine2D
Affine2D(Object, AffineTransform, Number) - Constructor for class script.imglib.algorithm.Affine2D
Affine2D(Object, AffineTransform, AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.Affine2D
Affine2D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsStrategyFactory<N>) - Constructor for class script.imglib.algorithm.Affine2D
Affine3D<T extends NumericType<T>> - Class in script.imglib.algorithm: Performs a mathematically correct transformation of an image.
Affine3D(Image<T>, float[], AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Affine3D
Affine3D(Object, float[], AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.Affine3D
Affine3D(Object, float[], AbstractAffine3D.Mode, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.Affine3D
Affine3D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, Number) - Constructor for class script.imglib.algorithm.Affine3D
Affine3D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.Affine3D
age - Variable in class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
Algorithm - Interface in mpicbg.imglib.algorithm: TODO
AlgorithmUtil - Class in script.imglib.algorithm.fn: TODO
AlgorithmUtil() - Constructor for class script.imglib.algorithm.fn.AlgorithmUtil
AllConnectedComponents - Class in mpicbg.imglib.algorithm.labeling: Label all 8-connected components of a binary image
AllConnectedComponents() - Constructor for class mpicbg.imglib.algorithm.labeling.AllConnectedComponents
AllConnectedComponents.PositionStack - Class in mpicbg.imglib.algorithm.labeling
allIdentical(List<T>) - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
allowEdgeExtrema(boolean) - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
allowEdgeExtrema(boolean) - Method in interface mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder: If set to true before the Algorithm.process() method is called, then extrema found at the edges of the image bounds (including time edges) will not be pruned, and will be included in the result array.
allowEdgeMax - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
alpha(int) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
Alpha - Class in script.imglib.color: TODO
Alpha(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Alpha: Extract the alpha channel of each pixel, in the range [0, 255].
analyzePeak(DifferenceOfGaussianPeak<T>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
And<T extends RealType<T>> - Class in imglib.ops.condition: TODO
And(Condition<T>, Condition<T>) - Constructor for class imglib.ops.condition.And
And - Class in imglib.ops.operator.binary: TODO
And() - Constructor for class imglib.ops.operator.binary.And
and(T) - Method in interface mpicbg.imglib.type.BooleanType
and(BitType) - Method in class mpicbg.imglib.type.logic.BitType
And - Class in script.imglib.math: TODO
And(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.And
And(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.And
And(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.And
And(IFunction, IFunction) - Constructor for class script.imglib.math.And
And(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.And
And(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.And
And(IFunction, Number) - Constructor for class script.imglib.math.And
And(Number, IFunction) - Constructor for class script.imglib.math.And
And(Number, Number) - Constructor for class script.imglib.math.And
And(Object...) - Constructor for class script.imglib.math.And
AndConstant - Class in imglib.ops.operator.unary: TODO
AndConstant(long) - Constructor for class imglib.ops.operator.unary.AndConstant
AnisotropicDiffusion<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.pde: Perona & Malik Anisotropic diffusion
AnisotropicDiffusion(Image<T>, double, AnisotropicDiffusion.DiffusionFunction) - Constructor for class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Instantiate the Perona & Malik anisotropic diffusion process, with a custom diffusion function.
AnisotropicDiffusion(Image<T>, double, double) - Constructor for class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Instantiate the Perona & Malik anisotropic diffusion process, with the default strong-edge diffusion function.
AnisotropicDiffusion.DiffusionFunction - Interface in mpicbg.imglib.algorithm.pde: The interface that function suitable to be diffusion function must implement.
AnisotropicDiffusion.StrongEdgeEnhancer - Class in mpicbg.imglib.algorithm.pde: The first diffusion function proposed by Perona & Malik.
AnisotropicDiffusion.WideRegionEnhancer - Class in mpicbg.imglib.algorithm.pde: The second diffusion function proposed by Perona & Malik.
apply(IFunction, R, int) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image with the type defined by , which has to be a subclass of RealType.
apply(IFunction, RGBALegacyType, int) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type RGBALegacyType.
applyMetaData(Image<?>, IFormatReader) - Static method in class mpicbg.imglib.io.LOCI
Array<T extends Type<T>,A extends DataAccess> - Class in mpicbg.imglib.container.array: TODO
Array(ArrayContainerFactory, A, int[], int) - Constructor for class mpicbg.imglib.container.array.Array
Array3D<T extends Type<T>,A extends DataAccess> - Class in mpicbg.imglib.container.array: TODO
Array3D(ArrayContainerFactory, A, int, int, int, int) - Constructor for class mpicbg.imglib.container.array.Array3D
Array3DLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
Array3DLocalizableByDimCursor(Array3D<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
Array3DLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
Array3DLocalizableByDimOutOfBoundsCursor(Array3D<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
Array3DLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
Array3DLocalizableCursor(Array3D<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
ArrayContainerFactory - Class in mpicbg.imglib.container.array: TODO
ArrayContainerFactory() - Constructor for class mpicbg.imglib.container.array.ArrayContainerFactory
ArrayCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
ArrayCursor(Array<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.ArrayCursor
ArrayDataAccess<A> - Interface in mpicbg.imglib.container.basictypecontainer.array: TODO
arrayIndex - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
ArrayLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
ArrayLocalizableByDimCursor(Array<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
ArrayLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
ArrayLocalizableByDimOutOfBoundsCursor(Array<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
ArrayLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
ArrayLocalizableCursor(Array<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
ArrayLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.array: TODO
ArrayLocalizablePlaneCursor(Array<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
arrayType - Variable in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
asArray(int, double) - Static method in class script.imglib.algorithm.fn.AlgorithmUtil: Copy the given double value into each index of a double[] array of length .
asChart() - Method in class script.imglib.analysis.Histogram
asChart(boolean) - Method in class script.imglib.analysis.Histogram: Return the JFreeChart with this histogram, and as a side effect, show it in a JFrame that provides the means to edit the dimensions and also the plot properties via a popup menu.
asDoubleArray(Collection<Number>) - Static method in class script.imglib.algorithm.fn.AlgorithmUtil
asDoubleArray(float[]) - Static method in class script.imglib.algorithm.fn.AlgorithmUtil
asImage() - Method in class script.imglib.analysis.BarChart
asImage(JFreeChart) - Static method in class script.imglib.analysis.ChartUtils
asImage(JFreeChart, int, int) - Static method in class script.imglib.analysis.ChartUtils
asImage() - Method in class script.imglib.analysis.Histogram
asImage() - Method in class script.imglib.color.fn.ColorFunction
asImage(int) - Method in class script.imglib.color.fn.ColorFunction
asImage() - Method in class script.imglib.math.fn.FloatImageOperation: Evaluate this operation as an Image<FloatType>.
asImage(int) - Method in class script.imglib.math.fn.FloatImageOperation: Evaluate this operation as an Image<FloatType> using the defined number of parallel threads.
asImage() - Method in interface script.imglib.math.fn.ImageComputation
asImage(int) - Method in interface script.imglib.math.fn.ImageComputation
ASin - Class in script.imglib.math: TODO
ASin(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ASin
ASin(IFunction) - Constructor for class script.imglib.math.ASin
ASin(Number) - Constructor for class script.imglib.math.ASin
asPoints(float[]) - Method in class script.imglib.analysis.DoGPeaks: Returns a list of peaks as Java3D points if possible: Point2f for 2D images Point3f for 3D images Point4f for 4D images
asPoints() - Method in class script.imglib.analysis.DoGPeaks: Returns a list of peaks as Java3D points: Point2f for 2D images, Point3f for 3D images, and Point4f for 4D images.
asPoints(Number) - Method in class script.imglib.analysis.DoGPeaks: Returns a list of peaks as Java3D points: Point2f for 2D images, Point3f for 3D images, and Point4f for 4D images.
AssignOperation<T extends RealType<T>> - Class in imglib.ops.operation: An AssignOperation computes values in an output image.
AssignOperation(Image<T>[], Image<T>, RealFunction<T>) - Constructor for class imglib.ops.operation.AssignOperation
ATan - Class in script.imglib.math: TODO
ATan(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ATan
ATan(IFunction) - Constructor for class script.imglib.math.ATan
ATan(Number) - Constructor for class script.imglib.math.ATan
ATan2 - Class in script.imglib.math: TODO
ATan2(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ATan2
ATan2(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ATan2
ATan2(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.ATan2
ATan2(IFunction, IFunction) - Constructor for class script.imglib.math.ATan2
ATan2(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.ATan2
ATan2(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ATan2
ATan2(IFunction, Number) - Constructor for class script.imglib.math.ATan2
ATan2(Number, IFunction) - Constructor for class script.imglib.math.ATan2
ATan2(Number, Number) - Constructor for class script.imglib.math.ATan2
Average - Class in imglib.ops.operator.binary: TODO
Average() - Constructor for class imglib.ops.operator.binary.Average
Average - Class in script.imglib.math: TODO
Average(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Average
Average(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Average
Average(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Average
Average(IFunction, IFunction) - Constructor for class script.imglib.math.Average
Average(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Average
Average(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Average
Average(IFunction, Number) - Constructor for class script.imglib.math.Average
Average(Number, IFunction) - Constructor for class script.imglib.math.Average
Average(Number, Number) - Constructor for class script.imglib.math.Average
Average(Object...) - Constructor for class script.imglib.math.Average
avg(int) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
AvgFunction<T extends RealType<T>> - Class in imglib.ops.function.pn: TODO
AvgFunction() - Constructor for class imglib.ops.function.pn.AvgFunction
AxisLessThan<T extends RealType<T>> - Class in imglib.ops.condition: TODO
AxisLessThan(int, int) - Constructor for class imglib.ops.condition.AxisLessThan

B

b() - Method in class script.imglib.math.fn.BinaryOperation
background - Variable in class mpicbg.imglib.container.shapelist.ShapeList
BALL - Static variable in class script.imglib.algorithm.fn.Morph
Bandpass<T extends NumericType<T>> - Class in mpicbg.imglib.algorithm.fft: TODO
Bandpass(Image<T>, int, int) - Constructor for class mpicbg.imglib.algorithm.fft.Bandpass
BandpassFilter<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
BandpassFilter(Image<T>, int, int) - Constructor for class script.imglib.algorithm.BandpassFilter
BandpassFilter(IFunction, int, int) - Constructor for class script.imglib.algorithm.BandpassFilter
BAR - Static variable in class script.imglib.algorithm.fn.Morph
BarChart - Class in script.imglib.analysis: TODO
BarChart(Collection<? extends Number>) - Constructor for class script.imglib.analysis.BarChart
BarChart(Collection<? extends Number>, String, String, String) - Constructor for class script.imglib.analysis.BarChart
BarChart(Map<? extends Number, ? extends Number>) - Constructor for class script.imglib.analysis.BarChart
BarChart(Map<? extends Number, ? extends Number>, String, String, String) - Constructor for class script.imglib.analysis.BarChart
BasePairBitType - Class in mpicbg.imglib.type.label: TODO
BasePairBitType(DirectAccessContainer<BasePairBitType, ? extends BitAccess>) - Constructor for class mpicbg.imglib.type.label.BasePairBitType
BasePairBitType(BasePairBitType.Base) - Constructor for class mpicbg.imglib.type.label.BasePairBitType
BasePairBitType() - Constructor for class mpicbg.imglib.type.label.BasePairBitType
BasePairBitType.Base - Enum in mpicbg.imglib.type.label
BasePairCharType - Class in mpicbg.imglib.type.label: TODO
BasePairCharType(DirectAccessContainer<BasePairCharType, ? extends CharAccess>) - Constructor for class mpicbg.imglib.type.label.BasePairCharType
BasePairCharType(BasePairBitType.Base) - Constructor for class mpicbg.imglib.type.label.BasePairCharType
BasePairCharType(char) - Constructor for class mpicbg.imglib.type.label.BasePairCharType
BasePairCharType() - Constructor for class mpicbg.imglib.type.label.BasePairCharType
BasePairType<T extends BasePairType<T>> - Interface in mpicbg.imglib.type: TODO
BasePairTypeDisplay<T extends BasePairType<T>> - Class in mpicbg.imglib.image.display: TODO
BasePairTypeDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.BasePairTypeDisplay
baseToValue() - Method in interface mpicbg.imglib.type.BasePairType
baseToValue() - Method in class mpicbg.imglib.type.label.BasePairBitType
baseToValue() - Method in class mpicbg.imglib.type.label.BasePairCharType
bck(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
bck(int) - Method in class mpicbg.imglib.cursor.link.NullLink
bck(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
bck(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
bck(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
bck(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
bckX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
bckX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
bckX() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
bckY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
bckY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
bckY() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
bckZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
bckZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
bckZ() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
Benchmark - Interface in mpicbg.imglib.algorithm: TODO
BenchmarkAlgorithm - Class in mpicbg.imglib.algorithm: This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented.
BenchmarkAlgorithm() - Constructor for class mpicbg.imglib.algorithm.BenchmarkAlgorithm
BEST - Static variable in class script.imglib.algorithm.fn.AbstractAffine3D
BEST - Static variable in class script.imglib.algorithm.Resample
BinaryInterpolation2D - Class in mpicbg.imglib.algorithm.labeling: Given two binary images of the same dimensions, generate an interpolated image that sits somewhere in between, as specified by the weight.
BinaryInterpolation2D(Image<BitType>, Image<BitType>, float) - Constructor for class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D
BinaryOperation - Class in script.imglib.math.fn
BinaryOperation(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(IFunction, IFunction) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(IFunction, Number) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Number, IFunction) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Number, Number) - Constructor for class script.imglib.math.fn.BinaryOperation
BinaryOperation(Object...) - Constructor for class script.imglib.math.fn.BinaryOperation: Compose: "fn(a1, fn(a2, fn(a3, fn(a4, a5))))".
BinaryOperator - Interface in imglib.ops.operator: TODO
BinaryOperatorFunction<T extends RealType<T>> - Class in imglib.ops.function.p2: TODO
BinaryOperatorFunction(BinaryOperator) - Constructor for class imglib.ops.function.p2.BinaryOperatorFunction
BitAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
BitArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
BitArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.BitArray
BitDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
BitDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.BitDynamicContainer
BitDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
BitDynamicContainerAccessor(BitDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.BitDynamicContainerAccessor
BitType - Class in mpicbg.imglib.type.logic: TODO
BitType(DirectAccessContainer<BitType, ? extends BitAccess>) - Constructor for class mpicbg.imglib.type.logic.BitType
BitType(boolean) - Constructor for class mpicbg.imglib.type.logic.BitType
BitType() - Constructor for class mpicbg.imglib.type.logic.BitType
BitTypeDisplay - Class in mpicbg.imglib.image.display: TODO
BitTypeDisplay(Image<BitType>) - Constructor for class mpicbg.imglib.image.display.BitTypeDisplay
blue(int) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
Blue - Class in script.imglib.color: TODO
Blue(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Blue: Extract the blue channel of each pixel, in the range [0, 255].
BooleanType<T extends BooleanType<T>> - Interface in mpicbg.imglib.type: TODO
BoundingBox - Class in mpicbg.imglib.labeling: The bounding box that contains a region from the minimum inclusive to the maximum non-inclusive.
BoundingBox(int) - Constructor for class mpicbg.imglib.labeling.BoundingBox
Brightness - Class in script.imglib.color: TODO
Brightness(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Brightness: Extract the brightness component of each pixel, in the range [0, 1].
ByteAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
ByteArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
ByteArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.ByteArray
ByteArray(byte[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.ByteArray
ByteDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
ByteDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.ByteDynamicContainer
ByteDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
ByteDynamicContainerAccessor(ByteDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.ByteDynamicContainerAccessor
ByteImagePlus<T extends Type<T>> - Class in mpicbg.imglib.container.imageplus: ImagePlusContainer for byte-stored data.
ByteImagePlus(ImagePlusContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.imageplus.ByteImagePlus: Standard constructor as called by default factories.
ByteImagePlus(ImagePlus, ImagePlusContainerFactory) - Constructor for class mpicbg.imglib.container.imageplus.ByteImagePlus
ByteType - Class in mpicbg.imglib.type.numeric.integer: TODO
ByteType(DirectAccessContainer<ByteType, ? extends ByteAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.ByteType
ByteType(byte) - Constructor for class mpicbg.imglib.type.numeric.integer.ByteType
ByteType() - Constructor for class mpicbg.imglib.type.numeric.integer.ByteType

C

c - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
c - Variable in class script.imglib.color.fn.RGBAOp
calibration - Variable in class mpicbg.imglib.cursor.special.CoordsCursor: Contain the pixel size for each of the cursor dimension.
calibration - Variable in class mpicbg.imglib.image.Image
canAccept(int) - Method in class imglib.ops.function.p1.UnaryOperatorFunction
canAccept(int) - Method in class imglib.ops.function.p2.BinaryOperatorFunction
canAccept(int) - Method in class imglib.ops.function.pn.AvgFunction
canAccept(int) - Method in class imglib.ops.function.pn.ConstFunction
canAccept(int) - Method in class imglib.ops.function.pn.NullFunction
canAccept(int) - Method in interface imglib.ops.function.RealFunction
CanvasImage<T extends Type<T>> - Class in mpicbg.imglib.algorithm: TODO
CanvasImage(Image<T>, int[], int[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.CanvasImage: Increase or decrease size of the image in all dimensions
CanvasImage(Image<T>, int[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.CanvasImage
CanvasImage(Image<T>, int[]) - Constructor for class mpicbg.imglib.algorithm.CanvasImage: This constructor can be called if the image is only cropped, then there is no OutOfBoundsStrategyFactory necessary.
Cbrt - Class in script.imglib.math: TODO
Cbrt(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Cbrt
Cbrt(IFunction) - Constructor for class script.imglib.math.Cbrt
Cbrt(Number) - Constructor for class script.imglib.math.Cbrt
Ceil - Class in script.imglib.math: TODO
Ceil(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Ceil
Ceil(IFunction) - Constructor for class script.imglib.math.Ceil
Ceil(Number) - Constructor for class script.imglib.math.Ceil
Cell<T extends Type<T>,A extends ArrayDataAccess<A>> - Class in mpicbg.imglib.container.cell: TODO
Cell(A, int, int[], int[], int) - Constructor for class mpicbg.imglib.container.cell.Cell
cell - Variable in class mpicbg.imglib.cursor.cell.CellCursor
CellContainer<T extends Type<T>,A extends ArrayDataAccess<A>> - Class in mpicbg.imglib.container.cell: TODO
CellContainer(ContainerFactory, A, int[], int[], int) - Constructor for class mpicbg.imglib.container.cell.CellContainer
CellContainerFactory - Class in mpicbg.imglib.container.cell: TODO
CellContainerFactory() - Constructor for class mpicbg.imglib.container.cell.CellContainerFactory
CellContainerFactory(int) - Constructor for class mpicbg.imglib.container.cell.CellContainerFactory
CellContainerFactory(int[]) - Constructor for class mpicbg.imglib.container.cell.CellContainerFactory
CellCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.cell: TODO
CellCursor(CellContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.cell.CellCursor
cellDimensions - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
cellEnd - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
cellEnd - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
cellId - Variable in class mpicbg.imglib.container.cell.Cell
cellInstance - Variable in class mpicbg.imglib.cursor.cell.CellCursor
CellLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.cell: TODO
CellLocalizableByDimCursor(CellContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
CellLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.cell: TODO
CellLocalizableByDimOutOfBoundsCursor(CellContainer<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
CellLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.cell: TODO
CellLocalizableCursor(CellContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.cell.CellLocalizableCursor
CellLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.cell: TODO
CellLocalizablePlaneCursor(CellContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
cellMaxI - Variable in class mpicbg.imglib.cursor.cell.CellCursor
cellOffset - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
cellPosition - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
cellPosition - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
cellSize - Variable in class mpicbg.imglib.container.cell.CellContainer
cellSize - Variable in class mpicbg.imglib.container.cell.CellContainerFactory
cellStep - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
cellStep - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
center - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
CHANNEL - Static variable in class mpicbg.imglib.io.ImageOpener
Channel - Class in script.imglib.color: TODO
Channel(Image<? extends RGBALegacyType>, int) - Constructor for class script.imglib.color.Channel
Channel(Image<? extends RealType<?>>, int) - Constructor for class script.imglib.color.fn.ColorFunction.Channel: In RGBALegacyType, A=4, R=3, G=2, B=1, or H=3, S=2, B=1
ChannelOp - Class in script.imglib.color.fn: TODO
ChannelOp(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.fn.ChannelOp
channels - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
CharAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
CharArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
CharArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.CharArray
CharArray(char[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.CharArray
CharDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
CharDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.CharDynamicContainer
CharDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
CharDynamicContainerAccessor(CharDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.CharDynamicContainerAccessor
ChartUtils - Class in script.imglib.analysis: TODO
ChartUtils() - Constructor for class script.imglib.analysis.ChartUtils
checkCellSize(int[], int[]) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
checkContainers(Collection<Image<?>>) - Static method in class script.imglib.math.Compute: Ensure that the Container of each Image of @param images is compatible with all the others.
checkDimensions(int[]) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
checkDimensions(double[]) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
checkDimensions(int[]) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
checkInput() - Method in interface mpicbg.imglib.algorithm.Algorithm
checkInput() - Method in class mpicbg.imglib.algorithm.CanvasImage
checkInput() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
checkInput() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Checks various fields to ensure they have been instantiated before executing the main functionality.
checkInput() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Checks various fields to ensure they have been instantiated before executing the main functionality.
checkInput() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
checkInput() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
checkInput() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
checkInput() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
checkInput() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
checkInput() - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
checkInput() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
checkInput() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
checkInput() - Method in class mpicbg.imglib.algorithm.histogram.Histogram
checkInput() - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
checkInput() - Method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
checkInput() - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D
checkInput() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
checkInput() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
checkInput() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
checkInput() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
checkInput() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
checkInput() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
checkInput() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks
checkInput() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
checkInput() - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion
checkInput() - Method in class mpicbg.imglib.algorithm.peak.GaussianPeakFitterND: Ensure the image is not null.
checkInput() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
checkInput() - Method in class mpicbg.imglib.algorithm.roi.DirectConvolution
checkInput() - Method in class mpicbg.imglib.algorithm.roi.MorphClose
checkInput() - Method in class mpicbg.imglib.algorithm.roi.MorphOpen
checkInput() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
checkInput() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
checkInput() - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression
checkInput() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
checkInput() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
checkInput() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
checkInput() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
checkInput() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
checkInput() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
checkPath(String) - Static method in class mpicbg.imglib.io.LOCI
chiSquared(double[][], double[], double[], FitFunction) - Static method in class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver: Calculate the current sum-squared-error
Chunk - Class in mpicbg.imglib.multithreading: TODO
Chunk(long, long) - Constructor for class mpicbg.imglib.multithreading.Chunk
clear() - Method in class mpicbg.imglib.image.Image
clone() - Method in class mpicbg.imglib.image.Image: Clones this Image, i.e.
cloneStructuringElement(int[][]) - Static method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
close() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
close() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
close() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
close() - Method in class mpicbg.imglib.container.array.Array
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.BitArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.CharArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.FakeArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.IntArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.LongArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
close() - Method in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
close() - Method in interface mpicbg.imglib.container.basictypecontainer.DataAccess
close() - Method in class mpicbg.imglib.container.cell.Cell
close() - Method in class mpicbg.imglib.container.cell.CellContainer
close() - Method in class mpicbg.imglib.container.constant.ConstantContainer
close() - Method in interface mpicbg.imglib.container.Container
close() - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainer
close() - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainerAccessor
close() - Method in class mpicbg.imglib.container.imageplus.ByteImagePlus
close() - Method in class mpicbg.imglib.container.imageplus.FloatImagePlus
close() - Method in class mpicbg.imglib.container.imageplus.IntImagePlus
close() - Method in class mpicbg.imglib.container.imageplus.ShortImagePlus
close() - Method in class mpicbg.imglib.container.planar.PlanarContainer
close() - Method in class mpicbg.imglib.container.shapelist.ShapeList
close() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
close() - Method in class mpicbg.imglib.cursor.cell.CellCursor
close() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
close() - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
close() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
close() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
close() - Method in interface mpicbg.imglib.cursor.Cursor
close() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
close() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
close() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
close() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
close() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
close() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
close() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
close() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
close() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
close() - Method in class mpicbg.imglib.image.Image: Closes the Image by closing all Cursors and the Container
close() - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
close() - Method in interface mpicbg.imglib.interpolation.Interpolator: Closes the interpolator and with it any cursors or other containers, images or datastructures that might have been created to make the interpolation work
close() - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
close() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
close() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
close() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
close() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
close() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
close() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
close() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Closed possibly created cursors or images
close() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
close() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
close() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
close() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue
Close<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Close(Object) - Constructor for class script.imglib.algorithm.Close
Close(Object, Morph.Shape, Number, Number, Number) - Constructor for class script.imglib.algorithm.Close
closeAllCursors() - Method in class mpicbg.imglib.image.Image: Closes all Cursors operating on this Image.
collectStats(LinkedList<R>, RegionOfInterestCursor<R>, int[]) - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation.SimpleCollectionStrategy
collectStats(LinkedList<R>, RegionOfInterestCursor<R>, int[]) - Method in interface mpicbg.imglib.algorithm.roi.StatisticalOperation.StatisticsCollectionStrategy
COLOR_RGB - Static variable in class mpicbg.imglib.image.display.imagej.ImageJFunctions
ColorFunction - Class in script.imglib.color.fn: TODO
ColorFunction() - Constructor for class script.imglib.color.fn.ColorFunction
ColorFunction.Channel - Class in script.imglib.color.fn
compare(T, T) - Method in class mpicbg.imglib.algorithm.kdtree.DistanceComparator
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.array.Array
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.cell.CellContainer
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
compareStorageContainerCompatibility(Container<?>) - Method in interface mpicbg.imglib.container.Container
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
compareStorageContainerCompatibility(Container<?>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
compareStorageContainerDimensions(Container<?>) - Method in interface mpicbg.imglib.container.Container
compareStorageContainerDimensions(Container<?>) - Method in class mpicbg.imglib.container.ContainerImpl
compareTo(PhaseCorrelationPeak) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
compareTo(Watershed.PixelIntensity<T>) - Method in class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
compareTo(BasePairBitType) - Method in class mpicbg.imglib.type.label.BasePairBitType
compareTo(BasePairCharType) - Method in class mpicbg.imglib.type.label.BasePairCharType
compareTo(BitType) - Method in class mpicbg.imglib.type.logic.BitType
compareTo(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
compareTo(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
compareTo(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
compareTo(T) - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
compareTo(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
compareTo(UnsignedByteType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
compareTo(UnsignedIntType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
compareTo(UnsignedShortType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
compareTo(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
compareTo(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
complement() - Method in interface mpicbg.imglib.type.BasePairType
complement() - Method in class mpicbg.imglib.type.label.BasePairBitType
complement() - Method in class mpicbg.imglib.type.label.BasePairCharType
complexConjugate() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
complexConjugate() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
complexConjugate() - Method in interface mpicbg.imglib.type.numeric.ComplexType
ComplexDoubleType - Class in mpicbg.imglib.type.numeric.complex: TODO
ComplexDoubleType(DirectAccessContainer<ComplexDoubleType, ? extends DoubleAccess>) - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
ComplexDoubleType(double, double) - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
ComplexDoubleType() - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
ComplexFloatType - Class in mpicbg.imglib.type.numeric.complex: TODO
ComplexFloatType(DirectAccessContainer<ComplexFloatType, ? extends FloatAccess>) - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexFloatType
ComplexFloatType(float, float) - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexFloatType
ComplexFloatType() - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexFloatType
ComplexType<T extends ComplexType<T>> - Interface in mpicbg.imglib.type.numeric: TODO
ComplexTypeComplexValueDisplay<T extends ComplexType<T>> - Class in mpicbg.imglib.image.display: TODO
ComplexTypeComplexValueDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.ComplexTypeComplexValueDisplay
ComplexTypeImpl<T extends ComplexTypeImpl<T>> - Class in mpicbg.imglib.type.numeric.complex: TODO
ComplexTypeImpl() - Constructor for class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
ComplexTypePhaseSpectrumDisplay<T extends ComplexType<T>> - Class in mpicbg.imglib.image.display: TODO
ComplexTypePhaseSpectrumDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.ComplexTypePhaseSpectrumDisplay
ComplexTypePowerSpectrumDisplay<T extends ComplexType<T>> - Class in mpicbg.imglib.image.display: TODO
ComplexTypePowerSpectrumDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
ComplexTypeRealValueDisplay<T extends ComplexType<T>> - Class in mpicbg.imglib.image.display: TODO
ComplexTypeRealValueDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.ComplexTypeRealValueDisplay
compute(T[], T) - Method in class imglib.ops.function.p1.UnaryOperatorFunction
compute(T[], T) - Method in class imglib.ops.function.p2.BinaryOperatorFunction
compute(T[], T) - Method in class imglib.ops.function.pn.AvgFunction
compute(T[], T) - Method in class imglib.ops.function.pn.ConstFunction
compute(T[], T) - Method in class imglib.ops.function.pn.NullFunction
compute(T[], T) - Method in interface imglib.ops.function.RealFunction
compute(A, A, A) - Method in class mpicbg.imglib.algorithm.function.SubtractNorm
compute(A, B, C) - Method in class mpicbg.imglib.algorithm.function.SubtractNormReal
compute(A, B, C) - Method in class mpicbg.imglib.algorithm.function.SubtractReal
compute(long, long, T, T) - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
compute(A, B, C) - Method in interface mpicbg.imglib.function.Function
Compute - Class in script.imglib.math: Compute an IFunction into an Image.
Compute() - Constructor for class script.imglib.math.Compute
computeAdvanced(long, long) - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
computeAdvanced(long, long) - Method in class mpicbg.imglib.algorithm.math.ImageConverter
computeAdvancedSum(double, double) - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
computeAverage(float[]) - Static method in class mpicbg.imglib.util.Util
computeAverage(double[]) - Static method in class mpicbg.imglib.util.Util
computeAverageDouble(List<Double>) - Static method in class mpicbg.imglib.util.Util
computeAverageFloat(List<Float>) - Static method in class mpicbg.imglib.util.Util
computeAvg(Image<R>) - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
computeCoefficients() - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
computeDerivativeVector(LocalizableByDimCursor<T>) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Computes the n-dimensional 1st derivative vector in 3x3x3...x3 environment for a certain Image location defined by the position of the LocalizableByDimCursor.
computeDerivativeVector(LocalizableByDimCursor<T>, Image<DoubleType>) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Computes the n-dimensional 1st derivative vector in 3x3x3...x3 environment for a certain Image location defined by the position of the LocalizableByDimCursor.
computeDistance(int[], int[]) - Static method in class mpicbg.imglib.util.Util
computeFFT(Image<T>, S, OutOfBoundsStrategyFactory<T>, int[], int[], int, boolean) - Static method in class mpicbg.imglib.algorithm.fft.FFTFunctions
computeFFT(FourierTransform<T, ComplexFloatType>, FourierTransform<S, ComplexFloatType>) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
computeGaussFloatArray3D(Image<T>, OutOfBoundsStrategyFactory<T>, double[][], int) - Static method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution: This class does the gaussian filtering of an image.
computeHessianMatrix(LocalizableByDimCursor<T>) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Computes the n-dimensional Hessian Matrix in 3x3x3...x3 environment for a certain Image location defined by the position of the LocalizableByDimCursor.
computeHessianMatrix(LocalizableByDimCursor<T>, Image<DoubleType>) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Computes the n-dimensional Hessian Matrix in 3x3x3...x3 environment for a certain Image location defined by the position of the LocalizableByDimCursor.
computeInverseFFT(Image<S>, T, int, boolean, boolean, int[], int[], float) - Static method in class mpicbg.imglib.algorithm.fft.FFTFunctions
computeKernel() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
computeLength(int[]) - Static method in class mpicbg.imglib.util.Util
computeMax(double[]) - Static method in class mpicbg.imglib.util.Util
computeMaximum(List<Float>) - Static method in class mpicbg.imglib.util.Util
computeMedian(long[]) - Static method in class mpicbg.imglib.util.Util
computeMedian(double[]) - Static method in class mpicbg.imglib.util.Util
computeMedian(float[]) - Static method in class mpicbg.imglib.util.Util
computeMin(double[]) - Static method in class mpicbg.imglib.util.Util
computeMinimum(List<Float>) - Static method in class mpicbg.imglib.util.Util
ComputeMinMax<T extends Type<T> & Comparable<T>> - Class in mpicbg.imglib.algorithm.math: TODO
ComputeMinMax(Image<T>) - Constructor for class mpicbg.imglib.algorithm.math.ComputeMinMax
computePercentile(double[], double) - Static method in class mpicbg.imglib.util.Util: Computes the percentile of a collection of doubles (percentile 0.5 roughly corresponds to median)
computePercentile(float[], float) - Static method in class mpicbg.imglib.util.Util: Computes the percentile of a collection of float (percentile 0.5 roughly corresponds to median)
computePseudoInverseMatrix(Matrix, double) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Computes the pseudo-inverse of a matrix using Singular Value Decomposition
computeScaleSpace(Image, double[], double, ContainerFactory) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
computeSimple(double, double) - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
computeSimple(long, long) - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
computeSimple(long, long) - Method in class mpicbg.imglib.algorithm.math.ImageConverter
computeStatistics() - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy: Compute all statistics on the labels if cache is dirty.
computeValue(double, double) - Method in class imglib.ops.operator.binary.Add
computeValue(double, double) - Method in class imglib.ops.operator.binary.And
computeValue(double, double) - Method in class imglib.ops.operator.binary.Average
computeValue(double, double) - Method in class imglib.ops.operator.binary.Copy
computeValue(double, double) - Method in class imglib.ops.operator.binary.CopyTransparentZero
computeValue(double, double) - Method in class imglib.ops.operator.binary.Difference
computeValue(double, double) - Method in class imglib.ops.operator.binary.Divide
computeValue(double, double) - Method in class imglib.ops.operator.binary.Max
computeValue(double, double) - Method in class imglib.ops.operator.binary.Min
computeValue(double, double) - Method in class imglib.ops.operator.binary.Multiply
computeValue(double, double) - Method in class imglib.ops.operator.binary.Or
computeValue(double, double) - Method in class imglib.ops.operator.binary.Subtract
computeValue(double, double) - Method in class imglib.ops.operator.binary.Xor
computeValue(double, double) - Method in interface imglib.ops.operator.BinaryOperator
computeValue(double) - Method in class imglib.ops.operator.unary.Abs
computeValue(double) - Method in class imglib.ops.operator.unary.AddConstant
computeValue(double) - Method in class imglib.ops.operator.unary.AddNoise
computeValue(double) - Method in class imglib.ops.operator.unary.AndConstant
computeValue(double) - Method in class imglib.ops.operator.unary.Constant
computeValue(double) - Method in class imglib.ops.operator.unary.Copy
computeValue(double) - Method in class imglib.ops.operator.unary.DivideByConstant
computeValue(double) - Method in class imglib.ops.operator.unary.Exp
computeValue(double) - Method in class imglib.ops.operator.unary.Gamma
computeValue(double) - Method in class imglib.ops.operator.unary.Invert
computeValue(double) - Method in class imglib.ops.operator.unary.Log
computeValue(double) - Method in class imglib.ops.operator.unary.Max
computeValue(double) - Method in class imglib.ops.operator.unary.Min
computeValue(double) - Method in class imglib.ops.operator.unary.MultiplyByConstant
computeValue(double) - Method in class imglib.ops.operator.unary.OrConstant
computeValue(double) - Method in class imglib.ops.operator.unary.Reciprocal
computeValue(double) - Method in class imglib.ops.operator.unary.Sqr
computeValue(double) - Method in class imglib.ops.operator.unary.Sqrt
computeValue(double) - Method in class imglib.ops.operator.unary.SubtractConstant
computeValue(double) - Method in class imglib.ops.operator.unary.XorConstant
computeValue(double) - Method in interface imglib.ops.operator.UnaryOperator
Condition<T extends RealType<T>> - Interface in imglib.ops.condition: TODO
Constant - Class in imglib.ops.operator.unary: TODO
Constant(double) - Constructor for class imglib.ops.operator.unary.Constant
ConstantContainer<T extends Type<T>> - Class in mpicbg.imglib.container.constant: A simple container that has only one value and returns it at each location.
ConstantContainer(ConstantContainerFactory, int[], T) - Constructor for class mpicbg.imglib.container.constant.ConstantContainer
ConstantContainer(int[], T) - Constructor for class mpicbg.imglib.container.constant.ConstantContainer
ConstantContainerFactory - Class in mpicbg.imglib.container.constant: TODO
ConstantContainerFactory() - Constructor for class mpicbg.imglib.container.constant.ConstantContainerFactory
ConstantCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.constant: A simple Cursor that always returns the same value at each location, but iterates the right amount of pixels relative to its size.
ConstantCursor(ConstantContainer<T>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.constant.ConstantCursor
ConstantLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.constant: A simple LocalizableByDimCursor that always returns the same value at each position.
ConstantLocalizableByDimCursor(ConstantContainer<T>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
ConstantLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.constant: A simple LocalizableByDimCursorOutOfBoundsCursor that always returns the same value at each position.
ConstantLocalizableByDimOutOfBoundsCursor(ConstantContainer<T>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
ConstantLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.constant: A simple LocalizableCursor that always returns the same value at each location, but iterates the right amount of pixels relative to its size and localizes itself properly.
ConstantLocalizableCursor(ConstantContainer<T>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
ConstantLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.constant: A simple LocalizablePlaneCursor that always returns the same value at each position.
ConstantLocalizablePlaneCursor(ConstantContainer<T>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor: A simple LocalizablePlaneCursor that always returns the same value at each position.
ConstFunction<T extends RealType<T>> - Class in imglib.ops.function.pn: TODO
ConstFunction(double) - Constructor for class imglib.ops.function.pn.ConstFunction
Container<T extends Type<T>> - Interface in mpicbg.imglib.container: TODO
container - Variable in class mpicbg.imglib.cursor.array.ArrayCursor
container - Variable in class mpicbg.imglib.cursor.cell.CellCursor
container - Variable in class mpicbg.imglib.cursor.CursorImpl
container - Variable in class mpicbg.imglib.cursor.dynamic.DynamicCursor
container - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusCursor
container - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimCursor
container - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimOutOfBoundsCursor
container - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableCursor
container - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizablePlaneCursor
container - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
container - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
Container3D<T extends Type<T>> - Interface in mpicbg.imglib.container: TODO
ContainerFactory - Class in mpicbg.imglib.container: TODO
ContainerFactory() - Constructor for class mpicbg.imglib.container.ContainerFactory
ContainerImpl<T extends Type<T>> - Class in mpicbg.imglib.container: TODO
ContainerImpl(ContainerFactory, int[]) - Constructor for class mpicbg.imglib.container.ContainerImpl
contains(Object) - Method in class mpicbg.imglib.image.Image
containsAll(Collection<?>) - Method in class mpicbg.imglib.image.Image
convert(A, A) - Method in class mpicbg.imglib.algorithm.function.NormMinMax
convert(Image<A>, ImageFactory, Converter<A, B>) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
convert(A, B) - Method in interface mpicbg.imglib.function.Converter
convert(A, B) - Method in class mpicbg.imglib.function.IntegerTypeConverter
convert(A, B) - Method in class mpicbg.imglib.function.RealTypeConverter
convert(A, A) - Method in class mpicbg.imglib.function.VoidConverter
convert() - Method in class mpicbg.imglib.type.TypeConverter
converter - Variable in class mpicbg.imglib.algorithm.integral.IntegralImage
converter - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
Converter<A extends Type<A>,B extends Type> - Interface in mpicbg.imglib.function: TODO
convertFloat(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
convertFloat(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
convertToFloat(Image<T>) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
convolve(LocalizableByDimCursor, LocalizableCursor, int, double[], long, long) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
convolve(LocalizableByDimCursor, LocalizableCursor, int, B[], long, long) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
convolve(LocalizableByDimCursor<T>, LocalizableCursor<T>, int, double[], long, long) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolutionReal
convolveDim(LocalizableByDimCursor, LocalizableCursor, int, long, long) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
convolveDim(LocalizableByDimCursor, LocalizableCursor, int, long, long) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
coordinate - Variable in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
CoordsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: Abstract cursor that offers facilities to move the cursor origin (whatever this means for the concrete implementation) by giving physical coordinates, converted using a calibration float[] array.
CoordsCursor() - Constructor for class mpicbg.imglib.cursor.special.CoordsCursor
Copy - Class in imglib.ops.operator.binary: TODO
Copy() - Constructor for class imglib.ops.operator.binary.Copy
Copy - Class in imglib.ops.operator.unary: TODO
Copy() - Constructor for class imglib.ops.operator.unary.Copy
copy() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
copy() - Method in class mpicbg.imglib.labeling.LabelingType
copy() - Method in class mpicbg.imglib.type.label.BasePairBitType
copy() - Method in class mpicbg.imglib.type.label.BasePairCharType
copy() - Method in class mpicbg.imglib.type.label.FakeType
copy() - Method in class mpicbg.imglib.type.logic.BitType
copy() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
copy() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
copy() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
copy() - Method in class mpicbg.imglib.type.numeric.integer.IntType
copy() - Method in class mpicbg.imglib.type.numeric.integer.LongType
copy() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
copy() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
copy() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
copy() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
copy() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
copy() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
copy() - Method in class mpicbg.imglib.type.numeric.real.FloatType
copy() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
copy() - Method in interface mpicbg.imglib.type.Type: Creates a new Type which can only store one value but contains the value of this Type
copy() - Method in class mpicbg.imglib.type.TypeImpl
copyDoubleArrayToFloat(double[]) - Static method in class mpicbg.imglib.cursor.special.Utils: Return a copy of the double array where every value has been casted to float
copyToImagePlus(Image<T>) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
copyToImagePlus(Image<T>, int) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
copyToImagePlus(Image<T>, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
copyToImagePlus(Image<T>, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
copyToImagePlus(Image<T>, int, int[], int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
CopyTransparentZero - Class in imglib.ops.operator.binary: TODO
CopyTransparentZero() - Constructor for class imglib.ops.operator.binary.CopyTransparentZero
correlate(Image<S>, Image<T>) - Static method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
Cos - Class in script.imglib.math: TODO
Cos(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Cos
Cos(IFunction) - Constructor for class script.imglib.math.Cos
Cos(Number) - Constructor for class script.imglib.math.Cos
Cosh - Class in script.imglib.math: TODO
Cosh(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Cosh
Cosh(IFunction) - Constructor for class script.imglib.math.Cosh
Cosh(Number) - Constructor for class script.imglib.math.Cosh
createAccessor() - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.DynamicContainer: Creates a Cursor-specific Accessor reading from the ArrayList, the Cursor creates it himself in his constructor
createAccessor() - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainer
createAccessor() - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainer
createAllocationSteps(int[]) - Static method in class mpicbg.imglib.container.array.Array
createAllocationSteps(int[], int[]) - Static method in class mpicbg.imglib.container.array.Array
createArray(Image<?>, double) - Static method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
createArray(Image<?>, B) - Static method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
createArray(int) - Method in interface mpicbg.imglib.algorithm.kdtree.node.Leaf
createArray(int) - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
createArray(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
createArray(int) - Method in interface mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.BitArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.CharArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.FakeArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.IntArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.LongArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
createArray(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingByteArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingCharArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingDoubleArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingFloatArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingIntArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingLongArrays
createArray(int) - Method in class mpicbg.imglib.wrapper.ExistingShortArrays
createArray1D(int) - Method in class mpicbg.imglib.labeling.LabelingType
createArray1D(int) - Method in class mpicbg.imglib.type.label.BasePairBitType
createArray1D(int) - Method in class mpicbg.imglib.type.label.BasePairCharType
createArray1D(int) - Method in class mpicbg.imglib.type.label.FakeType
createArray1D(int) - Method in class mpicbg.imglib.type.logic.BitType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.IntType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.LongType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.real.FloatType
createArray1D(int) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
createArray1D(int) - Method in interface mpicbg.imglib.type.Type: Creates a 1d array of the generic Type
createArray2(Image<?>, int) - Static method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
createArray2D(int, int) - Method in class mpicbg.imglib.labeling.LabelingType
createArray2D(int, int) - Method in class mpicbg.imglib.type.label.BasePairBitType
createArray2D(int, int) - Method in class mpicbg.imglib.type.label.BasePairCharType
createArray2D(int, int) - Method in class mpicbg.imglib.type.label.FakeType
createArray2D(int, int) - Method in class mpicbg.imglib.type.logic.BitType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.IntType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.LongType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.real.FloatType
createArray2D(int, int) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
createArray2D(int, int) - Method in interface mpicbg.imglib.type.Type: Creates a 2d array of the generic Type
createArray3D(int, int, int) - Method in class mpicbg.imglib.labeling.LabelingType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.label.BasePairBitType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.label.BasePairCharType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.label.FakeType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.logic.BitType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.IntType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.LongType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.real.FloatType
createArray3D(int, int, int) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
createArray3D(int, int, int) - Method in interface mpicbg.imglib.type.Type: Creates a 3d array of the generic Type
createBall(int, double) - Static method in class mpicbg.imglib.algorithm.roi.StructuringElement
createBar(int, int, int) - Static method in class mpicbg.imglib.algorithm.roi.StructuringElement
createBin(T) - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory
createBin(T) - Method in class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory
createBin(T) - Method in interface mpicbg.imglib.algorithm.histogram.HistogramBinFactory: Create a HistogramBin corresponding to the give Type, in the sense that for the purposes of the Histogram class, the given Type would be binned into the returned HistogramBin.
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createBitInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createByteInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createCellArray(int) - Method in class mpicbg.imglib.container.cell.CellContainer
createCellInstance(A, int, int[], int[], int) - Method in class mpicbg.imglib.container.cell.CellContainer
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createCharInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createContainer(int[], T) - Method in class mpicbg.imglib.container.constant.ConstantContainerFactory
createContainer(int[], T) - Method in class mpicbg.imglib.container.ContainerFactory: This method is called by Image.
createContainer(int[], T) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory: This method is called by Image.
createContainer(int[], T) - Method in class mpicbg.imglib.container.PixelGridContainerFactory: This method is called by Image.
createContainer(int[], T) - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory: This method is called by Image.
createCube(int, int) - Static method in class mpicbg.imglib.algorithm.roi.StructuringElement
createCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array
createCursor(Image<T>) - Method in class mpicbg.imglib.container.cell.CellContainer
createCursor(Image<T>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
createCursor(Image<T>) - Method in interface mpicbg.imglib.container.Container
createCursor(Image<T>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
createCursor(Image<T>) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
createCursor(Image<T>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
createCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
createCursor() - Method in class mpicbg.imglib.image.Image: Return a Cursor that will traverse the image's pixel data in a memory-optimized fashion.
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createDoubleInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createErrorDiffusionKernel(int) - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createFloatInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createGaussianKernel(ContainerFactory, double, int) - Static method in class mpicbg.imglib.algorithm.fft.FourierConvolution
createGaussianKernel(ContainerFactory, double[]) - Static method in class mpicbg.imglib.algorithm.fft.FourierConvolution
createGaussianKernel(ContainerFactory, double[], int) - Static method in class mpicbg.imglib.algorithm.fft.FourierConvolution
createGaussianKernel1D(T, boolean) - Static method in class mpicbg.imglib.util.Util: This method creates a gaussian kernel
createGaussianKernel1DDouble(double, boolean, int) - Static method in class mpicbg.imglib.util.Util: This method creates a gaussian kernel
createGaussianKernel1DDouble(double, boolean) - Static method in class mpicbg.imglib.util.Util: This method creates a gaussian kernel
createImage(int[], String) - Method in class mpicbg.imglib.image.ImageFactory
createImage(int[]) - Method in class mpicbg.imglib.image.ImageFactory
createImageFromArray(byte[], int[]) - Static method in class mpicbg.imglib.util.DevUtil
createImageFromArray(short[], int[]) - Static method in class mpicbg.imglib.util.DevUtil
createImageFromArray(float[], int[]) - Static method in class mpicbg.imglib.util.DevUtil
createImageFromArray(double[], int[]) - Static method in class mpicbg.imglib.util.DevUtil
createImageFromFactory(ImageFactory, int[]) - Static method in class mpicbg.imglib.algorithm.math.ImageCalculator
createImageFromFactory(ImageFactory<T>, int[]) - Static method in class mpicbg.imglib.algorithm.math.ImageConverter
createImagePlus(Image<T>, String, int, int[], int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
createInternalCursor() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
createInternalCursor() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
createInternalCursor() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
createInterpolator(InterpolatorFactory<T>) - Method in class mpicbg.imglib.image.Image: Creates and Interpolator on this Image given a certain InterpolatorFactory.
createInterpolator(Image<T>) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolatorFactory
createInterpolator(Image<T>) - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
createInterpolator(Image<T>) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory
createInterpolator(Image<T>) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolatorFactory
createInterpolator(Image<T>) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolatorFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createIntInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createKey(T) - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory
createKey(T) - Method in class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory
createKey(T) - Method in interface mpicbg.imglib.algorithm.histogram.HistogramBinFactory: Create a HistogramKey to be used for a HashTable, to key a HistogramBin.
createLabelingCursorStrategy(L) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategyFactory
createLabelingCursorStrategy(L) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategyFactory
createLinearByDimCursor(int[]) - Static method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
createLinearCursor(int[]) - Static method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.array.Array
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array3D
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.array.Array3D
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.cell.CellContainer
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.cell.CellContainer
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
createLocalizableByDimCursor(Image<T>) - Method in interface mpicbg.imglib.container.Container
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in interface mpicbg.imglib.container.Container
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
createLocalizableByDimCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeListCached
createLocalizableByDimCursor(Image<T>, OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeListCached
createLocalizableByDimCursor() - Method in class mpicbg.imglib.image.Image: Creates a LocalizableByDimCursor which is able to move freely within the Image.
createLocalizableByDimCursor(OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.image.Image: Creates a LocalizableByDimCursor which is able to move freely within and out of Image bounds.
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array3D
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.cell.CellContainer
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
createLocalizableCursor(Image<T>) - Method in interface mpicbg.imglib.container.Container
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
createLocalizableCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
createLocalizableCursor() - Method in class mpicbg.imglib.image.Image: Return a LocalizableCursor that will traverse the image's pixel data in a memory-optimized fashion and keeps track of its position
createLocalizableLabelCursor(T) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
createLocalizableLabelCursor(T) - Method in class mpicbg.imglib.labeling.Labeling: Create a localizable cursor that can be used to find the pixels associated with a particular label.
createLocalizableLabelCursor(T) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: A localizable cursor that iterates over every pixel with the given label.
createLocalizablePerimeterCursor(T) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
createLocalizablePerimeterCursor(T) - Method in class mpicbg.imglib.labeling.Labeling: Create a localizable cursor that can be used to find the pixels in the perimeter of a label.
createLocalizablePerimeterCursor(T) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: A localizable cursor that iterates over every pixel in the perimeter of the labeled object.
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.array.Array
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.cell.CellContainer
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.constant.ConstantContainer
createLocalizablePlaneCursor(Image<T>) - Method in interface mpicbg.imglib.container.Container
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeList
createLocalizablePlaneCursor(Image<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeListCached
createLocalizablePlaneCursor() - Method in class mpicbg.imglib.image.Image: Creates a LocalizablePlaneCursor which is optimized to iterate arbitrary 2-dimensional planes within an Image.
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in interface mpicbg.imglib.cursor.LocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
createLocalNeighborhoodCursor() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
createLocalNeighborhoodCursor(LocalizableByDimCursor<T>) - Static method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursorFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createLongInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createNewImage(int[], String) - Method in class mpicbg.imglib.image.Image: Creates a new Image with the same ContainerFactory and Type as this one.
createNewImage(int[]) - Method in class mpicbg.imglib.image.Image: Creates a new Image with the same ContainerFactory and Type as this one, the name is given automatically.
createNewImage(String) - Method in class mpicbg.imglib.image.Image: Creates a new Image with the same dimensions, ContainerFactory and Type as this one as this one.
createNewImage() - Method in class mpicbg.imglib.image.Image: Creates a new Image with the same dimensions, ContainerFactory and Type as this one, the name is given automatically.
createNewImage(int[], String) - Method in class mpicbg.imglib.labeling.Labeling
createNewImage(int[]) - Method in class mpicbg.imglib.labeling.Labeling
createNewImage(String) - Method in class mpicbg.imglib.labeling.Labeling
createNewImage() - Method in class mpicbg.imglib.labeling.Labeling
createNewLabeling(int[], String) - Method in class mpicbg.imglib.labeling.Labeling: Return a new named labeling using this labeling's factory
createNewLabeling(int[]) - Method in class mpicbg.imglib.labeling.Labeling: Create a new, unnamed labeling
createNewLabeling(String) - Method in class mpicbg.imglib.labeling.Labeling: Create a new named labeling whose dimensions are the same as the current labeling
createNewLabeling() - Method in class mpicbg.imglib.labeling.Labeling: Create a new unnamed labeling of the same dimensions as this one
createPositionArray() - Method in interface mpicbg.imglib.cursor.Cursor
createPositionArray() - Method in class mpicbg.imglib.cursor.CursorImpl
createPositionArray() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
createPositionArray() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
createPositionArray() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
createPositionArray() - Method in class mpicbg.imglib.image.Image: Creates an int array of the same dimensionality as this Image which can be used for addressing Cursors.
createPositionArray() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
createRegionalMaximaFinder(boolean) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory: Return the adequate RegionalExtremaFinder, given the dimensionality of the source image.
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in interface mpicbg.imglib.cursor.LocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
createRegionOfInterestCursor(int[], int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.DirectAccessContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
createShortInstance(int[], int) - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
createSortedGrayLevelIterator(Image<T>) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
createStrategy(LocalizableCursor<T>) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory
createStrategy(LocalizableCursor<T>) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
createStrategy(LocalizableCursor<T>) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorFactory
createStrategy(LocalizableCursor<T>) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodicFactory
createStrategy(LocalizableCursor<T>) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.labeling.LabelingType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.label.BasePairBitType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.label.BasePairCharType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.label.FakeType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.logic.BitType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.IntType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.LongType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.real.FloatType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
createSuitableDirectAccessContainer(DirectAccessContainerFactory, int[]) - Method in interface mpicbg.imglib.type.Type: The Type creates the DirectAccessContainer used for storing image data; based on the given storage strategy and its size.
createType() - Method in class mpicbg.imglib.image.Image: Creates a Type that the Image is typed with.
createType() - Method in class mpicbg.imglib.image.ImageFactory
createUniqueId() - Static method in class mpicbg.imglib.image.Image
createVariable(ImageFactory<T>, double) - Static method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
createVariable() - Method in class mpicbg.imglib.labeling.LabelingType
createVariable() - Method in class mpicbg.imglib.type.label.BasePairBitType
createVariable() - Method in class mpicbg.imglib.type.label.BasePairCharType
createVariable() - Method in class mpicbg.imglib.type.label.FakeType
createVariable() - Method in class mpicbg.imglib.type.logic.BitType
createVariable() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
createVariable() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.IntType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.LongType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
createVariable() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
createVariable() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
createVariable() - Method in class mpicbg.imglib.type.numeric.real.FloatType
createVariable() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
createVariable() - Method in interface mpicbg.imglib.type.Type: Creates a new Type which can only store one value.
CrossCorrelation<S extends RealType<S>,T extends RealType<T>> - Class in mpicbg.imglib.algorithm.correlation: TODO
CrossCorrelation(Image<S>, Image<T>) - Constructor for class mpicbg.imglib.algorithm.correlation.CrossCorrelation
CUBE - Static variable in class script.imglib.algorithm.fn.Morph
curIdx - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
currentCellsPlane - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
currentIndex - Variable in class mpicbg.imglib.container.dynamic.DynamicContainerAccessor
currentPosition - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
Cursor<T extends Type<T>> - Interface in mpicbg.imglib.cursor: The Cursor interface
cursor - Variable in class mpicbg.imglib.cursor.special.AbstractSpecialCursor: The cursor that will be used internally to iterate in the domain.
cursor - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
CursorImpl<T extends Type<T>> - Class in mpicbg.imglib.cursor: We use the class CursorImpl instead of implementing methods here so that other classes can only implement Cursor and extend other classes instead.
CursorImpl(Container<T>, Image<T>) - Constructor for class mpicbg.imglib.cursor.CursorImpl
CursorLink - Interface in mpicbg.imglib.cursor.link: TODO
cursors - Variable in class mpicbg.imglib.image.Image

D

data - Variable in class mpicbg.imglib.container.basictypecontainer.array.BitArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.CharArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.IntArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.LongArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
data - Variable in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
data - Variable in class mpicbg.imglib.container.cell.Cell
data - Variable in class mpicbg.imglib.container.cell.CellContainer
DataAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
DCTInterpolator<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.dct: TODO
DCTInterpolator(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.dct.DCTInterpolator
DCTInterpolatorFactory<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.dct: TODO
DCTInterpolatorFactory(OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.dct.DCTInterpolatorFactory
debug - Static variable in class mpicbg.imglib.algorithm.kdtree.KDTree
debug - Variable in class mpicbg.imglib.cursor.CursorImpl
dec() - Method in class mpicbg.imglib.type.logic.BitType
dec() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
dec() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
dec() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
dec() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
dec() - Method in class mpicbg.imglib.type.numeric.integer.LongType
dec() - Method in class mpicbg.imglib.type.numeric.real.FloatType
dec() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
dec() - Method in interface mpicbg.imglib.type.numeric.RealType
decIndex() - Method in class mpicbg.imglib.type.label.BasePairBitType
decIndex(int) - Method in class mpicbg.imglib.type.label.BasePairBitType
decIndex() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
decIndex(int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
decIndex() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
decIndex(int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
decIndex() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
decIndex(int) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
decIndex() - Method in interface mpicbg.imglib.type.Type: Decreases the array index, this is called by the Cursors which iterate over the image.
decIndex(int) - Method in interface mpicbg.imglib.type.Type: Decreases the index by increment steps, this is called by the Cursors which iterate over the image.
decIndex() - Method in class mpicbg.imglib.type.TypeImpl
decIndex(int) - Method in class mpicbg.imglib.type.TypeImpl
decodeName(String) - Static method in class mpicbg.imglib.io.ImageOpener: Converts the given image name back to a list of dimensional axis types.
decodeTypes(String) - Static method in class mpicbg.imglib.io.ImageOpener: Converts the given image name back to a list of dimensional axis types.
DEFAULT_THETA - Static variable in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
DefaultLabelingCursorStrategy<T extends Comparable<T>,L extends Labeling<T>> - Class in mpicbg.imglib.labeling: A relatively conservative strategy suitable for blobby objects - retain the bounding boxes and raster starts and reconstruct the cursors by scanning.
DefaultLabelingCursorStrategy(L) - Constructor for class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
DefaultLabelingCursorStrategyFactory<T extends Comparable<T>,L extends Labeling<T>> - Class in mpicbg.imglib.labeling: TODO
DefaultLabelingCursorStrategyFactory() - Constructor for class mpicbg.imglib.labeling.DefaultLabelingCursorStrategyFactory
defaultRho(Image<?>) - Static method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Calculates a default number of rho bins, which corresponds to a resolution of one pixel.
deleteLastSlice() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Deletes the last slice in the stack.
deleteLastSlice() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Deletes the last slice in the stack.
deleteObserver(Observer) - Method in class imglib.ops.operation.AssignOperation
deleteSlice(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Deletes the specified slice, where 1<=n<=nslices.
deleteSlice(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Deletes the specified slice, where 1<=n<=nslices.
depth - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
DevUtil - Class in mpicbg.imglib.util: TODO
Difference - Class in imglib.ops.operator.binary: TODO
Difference() - Constructor for class imglib.ops.operator.binary.Difference
Difference - Class in script.imglib.math: TODO
Difference(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Difference
Difference(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Difference
Difference(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Difference
Difference(IFunction, IFunction) - Constructor for class script.imglib.math.Difference
Difference(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Difference
Difference(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Difference
Difference(IFunction, Number) - Constructor for class script.imglib.math.Difference
Difference(Number, IFunction) - Constructor for class script.imglib.math.Difference
Difference(Number, Number) - Constructor for class script.imglib.math.Difference
Difference(Object...) - Constructor for class script.imglib.math.Difference
DifferenceOfGaussian<A extends Type<A>,B extends NumericType & Comparable> - Class in mpicbg.imglib.algorithm.scalespace: TODO
DifferenceOfGaussian(Image<A>, ImageFactory, Converter<A, B>, OutOfBoundsStrategyFactory, double, double, B, B) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: Calls the DifferenceOfGaussian constructor with the given sigmas copied into double[] arrays, one entry per dimension.
DifferenceOfGaussian(Image<A>, ImageFactory, Converter<A, B>, OutOfBoundsStrategyFactory, double[], double[], B, B) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: Extracts local minima and maxima of a certain size.
DifferenceOfGaussian.SpecialPoint - Enum in mpicbg.imglib.algorithm.scalespace
DifferenceOfGaussianPeak<T extends NumericType<T>> - Class in mpicbg.imglib.algorithm.scalespace: TODO
DifferenceOfGaussianPeak(int[], T, DifferenceOfGaussian.SpecialPoint) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
DifferenceOfGaussianReal<A extends RealType<A>,B extends RealType> - Class in mpicbg.imglib.algorithm.scalespace: TODO
DifferenceOfGaussianReal(Image<A>, ImageFactory, OutOfBoundsStrategyFactory, double, double, double, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
DifferenceOfGaussianReal(Image<A>, ImageFactory, OutOfBoundsStrategyFactory, double[], double[], double, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
DifferenceOfGaussianReal1<A extends RealType<A>> - Class in mpicbg.imglib.algorithm.scalespace: TODO
DifferenceOfGaussianReal1(Image<A>, OutOfBoundsStrategyFactory<A>, double, double, double, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal1
DifferenceOfGaussianReal1(Image<A>, OutOfBoundsStrategyFactory<A>, double[], double[], double, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal1
Dilate<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Dilate(Object) - Constructor for class script.imglib.algorithm.Dilate
Dilate(Object, Morph.Shape, Number, Number, Number) - Constructor for class script.imglib.algorithm.Dilate
dim - Variable in class mpicbg.imglib.container.cell.Cell
dim - Variable in class mpicbg.imglib.container.ContainerImpl
dimension - Variable in class mpicbg.imglib.algorithm.kdtree.KDTree
Dimensionality - Interface in mpicbg.imglib.cursor.vector: TODO
dimensions - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
dimensions - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
dimensions - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
dimensions - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
dimensions - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
dimensions - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
dimensions - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
dimensions - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
DirectAccessContainer<T extends Type<T>,A extends DataAccess> - Interface in mpicbg.imglib.container: TODO
DirectAccessContainerFactory - Class in mpicbg.imglib.container: TODO
DirectAccessContainerFactory() - Constructor for class mpicbg.imglib.container.DirectAccessContainerFactory
DirectAccessContainerImpl<T extends Type<T>,A extends DataAccess> - Class in mpicbg.imglib.container: TODO
DirectAccessContainerImpl(ContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.DirectAccessContainerImpl
DirectConvolution<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm.roi: DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation by operating on the image and kernel directly, rather than by using such time-saving tricks as FFT.
DirectConvolution(S, Image<T>, Image<R>) - Constructor for class mpicbg.imglib.algorithm.roi.DirectConvolution
DirectConvolution(S, Image<T>, Image<R>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.DirectConvolution
DirectConvolution(S, Image<T>, Image<R>, OutOfBoundsStrategyFactory<T>, boolean) - Constructor for class mpicbg.imglib.algorithm.roi.DirectConvolution
DirectCrossCorr<T extends RealType<T>,R extends RealType<R>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm.roi: DirectCrossCorr performs direct cross-correlation of a kernel against an image.
DirectCrossCorr(S, Image<T>, Image<R>) - Constructor for class mpicbg.imglib.algorithm.roi.DirectCrossCorr
DirectCrossCorr(S, Image<T>, Image<R>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.DirectCrossCorr
disableWrapping() - Method in class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
DiscCursor<T extends RealType<T>> - Class in mpicbg.imglib.cursor.special: TODO
DiscCursor(Image<T>, float[], float, float[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an image with a given spatial calibration.
DiscCursor(Image<T>, float[], float, float[]) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an image with a given spatial calibration, using a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
DiscCursor(Image<T>, float[], float) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an image, using the spatial calibration stored in the image and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
DiscCursor(Image<T>, Localizable, float, float[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an image with a given spatial calibration and a given OutOfBoundsStrategyFactory to handle off-bounds locations.
DiscCursor(Image<T>, Localizable, float, float[]) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an image, using the given spatial calibration and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
DiscCursor(Image<T>, Localizable, float) - Constructor for class mpicbg.imglib.cursor.special.DiscCursor: Construct a DiscCursor on an, using the spatial calibration stored in the image and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
DiscreteIntHistogramBin(T, HistogramKey<T>) - Constructor for class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory.DiscreteIntHistogramBin
DiscreteIntHistogramBinFactory<T extends IntegerType<T>> - Class in mpicbg.imglib.algorithm.histogram.discrete: A HistogramBinFactory to be used to create a discrete Histogram over integer-valued Type's.
DiscreteIntHistogramBinFactory() - Constructor for class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory
DiscreteIntHistogramBinFactory.DiscreteIntHistogramBin - Class in mpicbg.imglib.algorithm.histogram.discrete
Display<T extends Type<T>> - Class in mpicbg.imglib.image.display: TODO
Display(Image<T>) - Constructor for class mpicbg.imglib.image.display.Display
display - Variable in class mpicbg.imglib.image.Image
displayAsVirtualStack(Collection<InverseTransformDescription<T>>, int, int[], int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Collection<InverseTransformDescription<T>>, int, int[], int[], float[][]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Image<T>) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Image<T>, int) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Image<T>, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Image<T>, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
displayAsVirtualStack(Image<T>, int, int[], int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
DistanceComparator<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree: Compares which Leaf is closer to another Leaf
DistanceComparator(T) - Constructor for class mpicbg.imglib.algorithm.kdtree.DistanceComparator
distanceTo(N) - Method in interface mpicbg.imglib.algorithm.kdtree.node.Leaf
distanceTo(SimpleNode) - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
distanceTo(DifferenceOfGaussianPeak<T>) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
Dither<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Dither(Image<T>) - Constructor for class script.imglib.algorithm.Dither: The dithering threshold is computed from the min and max values of the image; see FloydSteinbergDithering.
Dither(Image<T>, float) - Constructor for class script.imglib.algorithm.Dither
Dither(IFunction) - Constructor for class script.imglib.algorithm.Dither
Dither(IFunction, float) - Constructor for class script.imglib.algorithm.Dither
div(BitType) - Method in class mpicbg.imglib.type.logic.BitType
div(ComplexFloatType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
div(T) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
div(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
div(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
div(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
div(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
div(UnsignedByteType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
div(UnsignedIntType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
div(UnsignedShortType) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
div(T) - Method in interface mpicbg.imglib.type.numeric.NumericType
div(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
div(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
div(RGBALegacyType) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
Divide - Class in imglib.ops.operator.binary: TODO
Divide() - Constructor for class imglib.ops.operator.binary.Divide
Divide - Class in script.imglib.math: TODO
Divide(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Divide
Divide(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Divide
Divide(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Divide
Divide(IFunction, IFunction) - Constructor for class script.imglib.math.Divide
Divide(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Divide
Divide(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Divide
Divide(IFunction, Number) - Constructor for class script.imglib.math.Divide
Divide(Number, IFunction) - Constructor for class script.imglib.math.Divide
Divide(Number, Number) - Constructor for class script.imglib.math.Divide
Divide(Object...) - Constructor for class script.imglib.math.Divide
Divide(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Divide: 1 / img
Divide(Number) - Constructor for class script.imglib.math.Divide: 1 / val
Divide(IFunction) - Constructor for class script.imglib.math.Divide: 1 / fn.eval()
DivideByConstant - Class in imglib.ops.operator.unary: TODO
DivideByConstant(double) - Constructor for class imglib.ops.operator.unary.DivideByConstant
divideIntoChunks(long, int) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
dogImage - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
DoGPeaks<N extends RealType<N>> - Class in script.imglib.analysis: Perform a difference of Gaussian on the given Image, and this class itself becomes the List of found peaks, each as a float[] array that specifies its position.
DoGPeaks(Object, Number, Number, Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks
DoGPeaks(Image<N>, Number, Number, Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks: Consider the as isotropic: apply the same sigma to all dimensions.
DoGPeaks(Object, List<Number>, List<Number>, Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks: Consider the as an isotropic image: apply the same sigma to all dimensions.
DoGPeaks(Object, float[], float[], Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks: Consider the as an isotropic image: apply the same sigma to all dimensions.
DoGPeaks(Object, double[], double[], Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks
DoGPeaks(Image<N>, double[], double[], Number, Number) - Constructor for class script.imglib.analysis.DoGPeaks
doInterpolate - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
DomainCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: Abstract class for CoordsCursors that iterate over a domain which size can be determined by a single parameter.
DomainCursor() - Constructor for class mpicbg.imglib.cursor.special.DomainCursor
DoubleAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
DoubleArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
DoubleArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
DoubleArray(double[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
DoubleDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
DoubleDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.DoubleDynamicContainer
DoubleDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
DoubleDynamicContainerAccessor(DoubleDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.DoubleDynamicContainerAccessor
DoubleType - Class in mpicbg.imglib.type.numeric.real: TODO
DoubleType(DirectAccessContainer<DoubleType, ? extends DoubleAccess>) - Constructor for class mpicbg.imglib.type.numeric.real.DoubleType
DoubleType(double) - Constructor for class mpicbg.imglib.type.numeric.real.DoubleType
DoubleType() - Constructor for class mpicbg.imglib.type.numeric.real.DoubleType
DownSample<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.gauss: TODO
DownSample(Image<T>, int[], float, float) - Constructor for class mpicbg.imglib.algorithm.gauss.DownSample
DownSample(Image<T>, float) - Constructor for class mpicbg.imglib.algorithm.gauss.DownSample
Downsample<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Downsample(IFunction, float) - Constructor for class script.imglib.algorithm.Downsample
Downsample(Image<T>, float) - Constructor for class script.imglib.algorithm.Downsample
dRho - Variable in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
dTheta - Variable in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
duplicate() - Method in class script.imglib.algorithm.Process
duplicate() - Method in class script.imglib.color.Channel
duplicate() - Method in class script.imglib.color.fn.ColorFunction.Channel
duplicate() - Method in class script.imglib.color.fn.RGBAOp
duplicate() - Method in class script.imglib.color.HSB
duplicate() - Method in class script.imglib.color.RGBA
duplicate() - Method in class script.imglib.math.fn.BinaryOperation
duplicate() - Method in interface script.imglib.math.fn.IFunction
duplicate() - Method in class script.imglib.math.fn.ImageFunction
duplicate() - Method in class script.imglib.math.fn.NumberFunction
duplicate() - Method in class script.imglib.math.fn.UnaryOperation
duplicates - Variable in class mpicbg.imglib.algorithm.kdtree.KDTree
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.labeling.LabelingType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.label.BasePairBitType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.label.BasePairCharType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.label.FakeType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.logic.BitType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.IntType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.LongType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.real.FloatType
duplicateTypeOnSameDirectAccessContainer() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
duplicateTypeOnSameDirectAccessContainer() - Method in interface mpicbg.imglib.type.Type: Creates a new Type which stores in the same physical array.
DynamicContainer<T extends Type<T>,A extends DynamicContainerAccessor> - Class in mpicbg.imglib.container.dynamic: TODO
DynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.DynamicContainer
DynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
DynamicContainerAccessor(int) - Constructor for class mpicbg.imglib.container.dynamic.DynamicContainerAccessor
DynamicContainerFactory - Class in mpicbg.imglib.container.dynamic: TODO
DynamicContainerFactory() - Constructor for class mpicbg.imglib.container.dynamic.DynamicContainerFactory
DynamicCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.dynamic: TODO
DynamicCursor(DynamicContainer<T, ? extends DynamicContainerAccessor>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.dynamic.DynamicCursor
DynamicLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.dynamic: TODO
DynamicLocalizableByDimCursor(DynamicContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
DynamicLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.dynamic: TODO
DynamicLocalizableByDimOutOfBoundsCursor(DynamicContainer<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
DynamicLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.dynamic: TODO
DynamicLocalizableCursor(DynamicContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
DynamicLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.dynamic: TODO
DynamicLocalizablePlaneCursor(DynamicContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor

E

empty - Static variable in class script.imglib.color.fn.ColorFunction
enableQuantization(boolean) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: The watershed repetitively evaluates the lowest intensity unlabeled pixel starting from the seeds.
entitiesPerPixel - Variable in class mpicbg.imglib.container.PixelGridContainerImpl
equals(Object) - Method in class mpicbg.imglib.algorithm.histogram.HistogramKey: Determines whether this HistogramKey is equal to the given Object.
equals(SimpleNode) - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
equivalent(T, T) - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory
equivalent(T, T) - Method in class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory
equivalent(T, T) - Method in interface mpicbg.imglib.algorithm.histogram.HistogramBinFactory: Determines whether two Types are equivalent in the sense that they would be binned into the same HistogramBin.
Erode<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Erode(Object) - Constructor for class script.imglib.algorithm.Erode
Erode(Object, Morph.Shape, Number, Number, Number) - Constructor for class script.imglib.algorithm.Erode
error - Variable in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
error_message - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
errorMessage - Variable in class mpicbg.imglib.algorithm.BenchmarkAlgorithm
errorMessage - Variable in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
eval(double, int[]) - Method in interface mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.DiffusionFunction: Return the conduction coefficient in a given direction, from the value of the image gradient in that direction
eval(double, int[]) - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.StrongEdgeEnhancer
eval(double, int[]) - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.WideRegionEnhancer
eval() - Method in class script.imglib.algorithm.Process
eval() - Method in class script.imglib.color.fn.ChannelOp
eval() - Method in class script.imglib.color.fn.ColorFunction.Channel
eval() - Method in class script.imglib.color.fn.HSBOp
eval() - Method in class script.imglib.color.HSB: Returns each HSB value packed in an int that is casted to double.
eval() - Method in class script.imglib.color.Luminance
eval() - Method in class script.imglib.color.RGBA: Returns each ARGB value packed in an int that is casted to double.
eval() - Method in class script.imglib.math.Abs
eval() - Method in class script.imglib.math.ACos
eval() - Method in class script.imglib.math.Add
eval() - Method in class script.imglib.math.And
eval() - Method in class script.imglib.math.ASin
eval() - Method in class script.imglib.math.ATan
eval() - Method in class script.imglib.math.ATan2
eval() - Method in class script.imglib.math.Average
eval() - Method in class script.imglib.math.Cbrt
eval() - Method in class script.imglib.math.Ceil
eval() - Method in class script.imglib.math.Cos
eval() - Method in class script.imglib.math.Cosh
eval() - Method in class script.imglib.math.Difference
eval() - Method in class script.imglib.math.Divide
eval() - Method in class script.imglib.math.Exp
eval() - Method in class script.imglib.math.Expm1
eval() - Method in class script.imglib.math.Floor
eval() - Method in interface script.imglib.math.fn.IFunction: Evaluate this function and return a result in double floating-point precision.
eval() - Method in class script.imglib.math.fn.ImageFunction
eval() - Method in class script.imglib.math.fn.NumberFunction
eval() - Method in class script.imglib.math.Hypot
eval() - Method in class script.imglib.math.IEEEremainder
eval() - Method in class script.imglib.math.Log
eval() - Method in class script.imglib.math.Log10
eval() - Method in class script.imglib.math.Log1p
eval() - Method in class script.imglib.math.Max
eval() - Method in class script.imglib.math.Min
eval() - Method in class script.imglib.math.Multiply
eval() - Method in class script.imglib.math.Or
eval() - Method in class script.imglib.math.Pow
eval() - Method in class script.imglib.math.Random
eval() - Method in class script.imglib.math.Rint
eval() - Method in class script.imglib.math.Round
eval() - Method in class script.imglib.math.Signum
eval() - Method in class script.imglib.math.Sin
eval() - Method in class script.imglib.math.Sinh
eval() - Method in class script.imglib.math.Sqrt
eval() - Method in class script.imglib.math.Subtract
eval() - Method in class script.imglib.math.Tan
eval() - Method in class script.imglib.math.Tanh
eval() - Method in class script.imglib.math.ToDegrees
eval() - Method in class script.imglib.math.ToRadians
eval() - Method in class script.imglib.math.Xor
execute() - Method in class imglib.ops.operation.AssignOperation
ExistingByteArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingByteArrays(List<byte[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingByteArrays
ExistingCharArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingCharArrays(List<char[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingCharArrays
ExistingDoubleArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingDoubleArrays(List<double[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingDoubleArrays
ExistingFloatArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingFloatArrays(List<float[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingFloatArrays
ExistingIntArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingIntArrays(List<int[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingIntArrays
ExistingLongArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingLongArrays(List<long[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingLongArrays
ExistingShortArrays - Class in mpicbg.imglib.wrapper: Instead of creating new cell arrays, it return the corresponding array from a predefined list
ExistingShortArrays(List<short[]>) - Constructor for class mpicbg.imglib.wrapper.ExistingShortArrays
Exp - Class in imglib.ops.operator.unary: TODO
Exp() - Constructor for class imglib.ops.operator.unary.Exp
exp() - Method in interface mpicbg.imglib.type.numeric.ExponentialMathType
exp() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
Exp - Class in script.imglib.math: TODO
Exp(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Exp
Exp(IFunction) - Constructor for class script.imglib.math.Exp
Exp(Number) - Constructor for class script.imglib.math.Exp
Expm1 - Class in script.imglib.math: TODO
Expm1(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Expm1
Expm1(IFunction) - Constructor for class script.imglib.math.Expm1
Expm1(Number) - Constructor for class script.imglib.math.Expm1
ExponentialMathType<T extends ExponentialMathType<T>> - Interface in mpicbg.imglib.type.numeric: TODO
extract2DSlice(Image<T>, Display<T>, int, int, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
extractPhaseCorrelationPeaks(Image<FloatType>, int, FourierTransform<?, ?>, FourierTransform<?, ?>) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
extractSliceByte(Image<T>, Display<T>, int, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
extractSliceFloat(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
extractSliceFloat(Image<T>, Display<T>, int, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
extractSliceFloatSingleThreaded(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
extractSliceRGB(Image<T>, Display<T>, int, int, int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack

F

factory - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
factory - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
factory - Variable in class mpicbg.imglib.container.planar.PlanarContainer
factory - Variable in class mpicbg.imglib.container.shapelist.ShapeList
Factory - Interface in mpicbg.imglib: TODO
FakeAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
FakeArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
FakeArray() - Constructor for class mpicbg.imglib.container.basictypecontainer.array.FakeArray
fakeType - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
FakeType - Class in mpicbg.imglib.type.label: TODO
FakeType() - Constructor for class mpicbg.imglib.type.label.FakeType
FFT<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
FFT(Image<T>) - Constructor for class script.imglib.algorithm.FFT
FFT(IFunction) - Constructor for class script.imglib.algorithm.FFT
FFTFunctions - Class in mpicbg.imglib.algorithm.fft: TODO
FFTFunctions() - Constructor for class mpicbg.imglib.algorithm.fft.FFTFunctions
filterPeak(LocalizableByDimCursor<FloatType>, int[], int[], boolean) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
findAveragePosition(ArrayList<int[]>) - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder: Given an ArrayList of int[] (coordinates), computes the averaged coordinates and returns them.
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.algorithm.Process
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.color.fn.ColorFunction.Channel
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.color.fn.RGBAOp
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.color.HSB
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.color.RGBA
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.math.fn.BinaryOperation
findCursors(Collection<Cursor<?>>) - Method in interface script.imglib.math.fn.IFunction: Put any cursors in use by this function (and any nested functions) in @param cursors.
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.math.fn.ImageFunction
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.math.fn.NumberFunction
findCursors(Collection<Cursor<?>>) - Method in class script.imglib.math.fn.UnaryOperation
findImages(IFunction) - Static method in class script.imglib.math.Compute: Find all images in @param op and nested IFunction instances.
findNearestNeighbor(T) - Method in class mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch
findNearestNeighbor(T, Node<T>, int) - Method in class mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch
findNeighbors(T, Node<T>, int) - Method in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
findNeighborsSorted(T, double) - Method in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
findNeighborsUnsorted(T, double) - Method in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
findNNearestNeighbors(T, int) - Method in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
findNNearestNeighbors(T, Node<T>, int, int, T[]) - Method in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
findPeaks(Image) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
FitFunction - Interface in mpicbg.imglib.algorithm.peak: Interface for fitting-target functions.
fitValue - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
FloatAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
FloatArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
FloatArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.FloatArray
FloatArray(float[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.FloatArray
FloatDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
FloatDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.FloatDynamicContainer
FloatDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
FloatDynamicContainerAccessor(FloatDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.FloatDynamicContainerAccessor
floatFactory - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
floatImage - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
FloatImageOperation - Class in script.imglib.math.fn: TODO
FloatImageOperation() - Constructor for class script.imglib.math.fn.FloatImageOperation
FloatImagePlus<T extends Type<T>> - Class in mpicbg.imglib.container.imageplus: ImagePlusContainer for float-stored data.
FloatImagePlus(ImagePlusContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.imageplus.FloatImagePlus: Standard constructor as called by default factories.
FloatImagePlus(ImagePlus, ImagePlusContainerFactory) - Constructor for class mpicbg.imglib.container.imageplus.FloatImagePlus
FloatType - Class in mpicbg.imglib.type.numeric.real: TODO
FloatType(DirectAccessContainer<FloatType, ? extends FloatAccess>) - Constructor for class mpicbg.imglib.type.numeric.real.FloatType
FloatType(float) - Constructor for class mpicbg.imglib.type.numeric.real.FloatType
FloatType() - Constructor for class mpicbg.imglib.type.numeric.real.FloatType
floor(float) - Static method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
Floor - Class in script.imglib.math: TODO
Floor(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Floor
Floor(IFunction) - Constructor for class script.imglib.math.Floor
Floor(Number) - Constructor for class script.imglib.math.Floor
FloydSteinbergDithering<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.floydsteinberg: TODO
FloydSteinbergDithering(Image<T>, float) - Constructor for class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
FloydSteinbergDithering(Image<T>) - Constructor for class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
FourierConvolution<T extends RealType<T>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm.fft: TODO
FourierConvolution(Image<T>, Image<S>) - Constructor for class mpicbg.imglib.algorithm.fft.FourierConvolution
FourierTransform<T extends RealType<T>,S extends ComplexType<S>> - Class in mpicbg.imglib.algorithm.fft: TODO
FourierTransform(Image<T>, S, FourierTransform.PreProcessing, FourierTransform.Rearrangement, FourierTransform.FFTOptimization, float, float, int) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform(Image<T>, S) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform(Image<T>, S, FourierTransform.Rearrangement) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform(Image<T>, S, FourierTransform.FFTOptimization) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform(Image<T>, S, FourierTransform.PreProcessing) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform(Image<T>, S, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.fft.FourierTransform
FourierTransform.FFTOptimization - Enum in mpicbg.imglib.algorithm.fft
FourierTransform.PreProcessing - Enum in mpicbg.imglib.algorithm.fft
FourierTransform.Rearrangement - Enum in mpicbg.imglib.algorithm.fft
frames - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
Function<A extends Type<A>,B extends Type,C extends Type<C>> - Interface in mpicbg.imglib.function: TODO
fwd() - Method in class imglib.ops.operation.MultiImageIterator
fwd(long) - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
fwd() - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
fwd(long) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
fwd() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
fwd() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwd(long) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwd(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
fwd(long) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
fwd(long) - Method in class mpicbg.imglib.cursor.array.ArrayCursor
fwd() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
fwd(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
fwd(long) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
fwd() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
fwd() - Method in class mpicbg.imglib.cursor.cell.CellCursor
fwd() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
fwd(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
fwd() - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
fwd() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
fwd(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
fwd(long) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
fwd() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
fwd(long) - Method in class mpicbg.imglib.cursor.CursorImpl
fwd(long) - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
fwd() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
fwd(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
fwd(long) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
fwd() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
fwd() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusCursor2D
fwd(long) - Method in interface mpicbg.imglib.cursor.Iterable
fwd() - Method in interface mpicbg.imglib.cursor.Iterable
fwd(int) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
fwd(long) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
fwd() - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
fwd(int) - Method in class mpicbg.imglib.cursor.link.NullLink
fwd(long) - Method in class mpicbg.imglib.cursor.link.NullLink
fwd() - Method in class mpicbg.imglib.cursor.link.NullLink
fwd(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
fwd() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
fwd() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor2D
fwd(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
fwd() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
fwd(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
fwd() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
fwd(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
fwd() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
fwd() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
fwd(long) - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
fwd() - Method in class mpicbg.imglib.cursor.special.DiscCursor
fwd() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
fwd(long) - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
fwd() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
fwd() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
fwd() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
fwd() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
fwd() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
fwd(long) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
fwd() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
fwd(long) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
fwd() - Method in class mpicbg.imglib.cursor.special.SphereCursor
fwd(long) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
fwd() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
fwdX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwdX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
fwdX() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
fwdY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwdY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
fwdY() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
fwdZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
fwdZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
fwdZ() - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D

G

Gamma - Class in imglib.ops.operator.unary: TODO
Gamma(double) - Constructor for class imglib.ops.operator.unary.Gamma
Gauss<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Gauss(Image<T>, double) - Constructor for class script.imglib.algorithm.Gauss: A Gaussian convolution with an OutOfBoundsStrategyMirrorFactory.
Gauss(Image<T>, double[]) - Constructor for class script.imglib.algorithm.Gauss: A Gaussian convolution with an OutOfBoundsStrategyMirrorFactory.
Gauss(IFunction, double) - Constructor for class script.imglib.algorithm.Gauss: A Gaussian convolution with an OutOfBoundsStrategyMirrorFactory.
Gauss(IFunction, double[]) - Constructor for class script.imglib.algorithm.Gauss: A Gaussian convolution with an OutOfBoundsStrategyMirrorFactory.
Gauss(Image<T>, OutOfBoundsStrategyFactory<T>, double) - Constructor for class script.imglib.algorithm.Gauss
Gauss(Image<T>, OutOfBoundsStrategyFactory<T>, double[]) - Constructor for class script.imglib.algorithm.Gauss
Gauss(IFunction, OutOfBoundsStrategyFactory<T>, double) - Constructor for class script.imglib.algorithm.Gauss
Gauss(IFunction, OutOfBoundsStrategyFactory<T>, double[]) - Constructor for class script.imglib.algorithm.Gauss
GaussianConvolution<T extends NumericType<T>> - Class in mpicbg.imglib.algorithm.gauss: TODO
GaussianConvolution(Image<T>, OutOfBoundsStrategyFactory<T>, double[]) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution
GaussianConvolution(Image<T>, OutOfBoundsStrategyFactory<T>, double) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution
GaussianConvolution2<A extends Type<A>,B extends NumericType> - Class in mpicbg.imglib.algorithm.gauss: TODO
GaussianConvolution2(Image<A>, ImageFactory, OutOfBoundsStrategyFactory, Converter<A, B>, double[]) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution2
GaussianConvolution2(Image<A>, ImageFactory, OutOfBoundsStrategyFactory, Converter<A, B>, double) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution2
GaussianConvolution3<A extends Type<A>,B extends NumericType,C extends Type<C>> - Class in mpicbg.imglib.algorithm.gauss: Computes a Gaussian Convolution on any Type(A) for which is defined how to convert it into a NumericType(B) on which the convolution is performed and back to the desired output Type(C).
GaussianConvolution3(Image<A>, ImageFactory, ImageFactory<C>, OutOfBoundsStrategyFactory, Converter<A, B>, Converter<B, C>, double[]) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
GaussianConvolution3(Image<A>, ImageFactory, ImageFactory<C>, OutOfBoundsStrategyFactory, Converter<A, B>, Converter<B, C>, double) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
GaussianConvolution4<A extends Type<A>,B extends ExponentialMathType,C extends Type<C>> - Class in mpicbg.imglib.algorithm.gauss: TODO
GaussianConvolution4(Image<A>, ImageFactory, ImageFactory<C>, OutOfBoundsStrategyFactory, Converter<A, B>, Converter<B, C>, B[]) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
GaussianConvolution4(Image<A>, ImageFactory, ImageFactory<C>, OutOfBoundsStrategyFactory, Converter<A, B>, Converter<B, C>, B) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
GaussianConvolutionReal<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.gauss: TODO
GaussianConvolutionReal(Image<T>, OutOfBoundsStrategyFactory<T>, double[]) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolutionReal
GaussianConvolutionReal(Image<T>, OutOfBoundsStrategyFactory<T>, double) - Constructor for class mpicbg.imglib.algorithm.gauss.GaussianConvolutionReal
GaussianMultiDLM - Class in mpicbg.imglib.algorithm.peak: A n-dimensional Gaussian peak function, representing an elliptical Gaussian, with axis constrained to be aligned with the main axis.
GaussianMultiDLM() - Constructor for class mpicbg.imglib.algorithm.peak.GaussianMultiDLM
GaussianPeakFitterND<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.peak: A simple class fit a gaussian to the peaks in a n-dim, 0-background image.
GaussianPeakFitterND(Image<T>) - Constructor for class mpicbg.imglib.algorithm.peak.GaussianPeakFitterND: Instantiate a 2D gaussian peak fitter that will operate on the given image.
generation - Variable in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
generation - Variable in class mpicbg.imglib.labeling.LabelingType
GenericByteType<T extends GenericByteType<T>> - Class in mpicbg.imglib.type.numeric.integer: TODO
GenericByteType(DirectAccessContainer<T, ? extends ByteAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericByteType
GenericByteType(byte) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericByteType
GenericByteType() - Constructor for class mpicbg.imglib.type.numeric.integer.GenericByteType
GenericCursorLink<T extends Type<T>> - Class in mpicbg.imglib.cursor.link: TODO
GenericCursorLink(LocalizableByDimCursor<T>) - Constructor for class mpicbg.imglib.cursor.link.GenericCursorLink
GenericCursorLink(Image<T>) - Constructor for class mpicbg.imglib.cursor.link.GenericCursorLink
GenericIntType<T extends GenericIntType<T>> - Class in mpicbg.imglib.type.numeric.integer: TODO
GenericIntType(DirectAccessContainer<T, ? extends IntAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericIntType
GenericIntType(int) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericIntType
GenericIntType() - Constructor for class mpicbg.imglib.type.numeric.integer.GenericIntType
GenericShortType<T extends GenericShortType<T>> - Class in mpicbg.imglib.type.numeric.integer: TODO
GenericShortType(DirectAccessContainer<T, ? extends ShortAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericShortType
GenericShortType(short) - Constructor for class mpicbg.imglib.type.numeric.integer.GenericShortType
GenericShortType() - Constructor for class mpicbg.imglib.type.numeric.integer.GenericShortType
get(int) - Method in interface mpicbg.imglib.algorithm.kdtree.node.Leaf
get(int) - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
get(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
get() - Method in interface mpicbg.imglib.type.BasePairType
get() - Method in interface mpicbg.imglib.type.BooleanType
get() - Method in class mpicbg.imglib.type.label.BasePairBitType
get() - Method in class mpicbg.imglib.type.label.BasePairCharType
get() - Method in class mpicbg.imglib.type.logic.BitType
get() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
get() - Method in class mpicbg.imglib.type.numeric.integer.IntType
get() - Method in class mpicbg.imglib.type.numeric.integer.LongType
get() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
get() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
get() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
get() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
get() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
get() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
get() - Method in class mpicbg.imglib.type.numeric.real.FloatType
get() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
get32Bit(T) - Method in class mpicbg.imglib.image.display.BasePairTypeDisplay
get32Bit(BitType) - Method in class mpicbg.imglib.image.display.BitTypeDisplay
get32Bit(T) - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
get32Bit(T) - Method in class mpicbg.imglib.image.display.Display
get32Bit(RGBALegacyType) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
get32Bit(T) - Method in class mpicbg.imglib.image.display.IntegerTypeDisplay
get32Bit(T) - Method in class mpicbg.imglib.image.display.RealTypeDisplay
get32BitNormed(T) - Method in class mpicbg.imglib.image.display.BasePairTypeDisplay
get32BitNormed(BitType) - Method in class mpicbg.imglib.image.display.BitTypeDisplay
get32BitNormed(T) - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
get32BitNormed(T) - Method in class mpicbg.imglib.image.display.Display
get32BitNormed(RGBALegacyType) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
get32BitNormed(T) - Method in class mpicbg.imglib.image.display.IntegerTypeDisplay
get32BitNormed(T) - Method in class mpicbg.imglib.image.display.RealTypeDisplay
get8BitARGB(T) - Method in class mpicbg.imglib.image.display.Display
get8BitARGB(RGBALegacyType) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
get8BitSigned(T) - Method in class mpicbg.imglib.image.display.BasePairTypeDisplay
get8BitSigned(BitType) - Method in class mpicbg.imglib.image.display.BitTypeDisplay
get8BitSigned(T) - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
get8BitSigned(T) - Method in class mpicbg.imglib.image.display.Display
get8BitSigned(RGBALegacyType) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
get8BitSigned(T) - Method in class mpicbg.imglib.image.display.IntegerTypeDisplay
get8BitSigned(T) - Method in class mpicbg.imglib.image.display.RealTypeDisplay
get8BitUnsigned(T) - Method in class mpicbg.imglib.image.display.BasePairTypeDisplay
get8BitUnsigned(BitType) - Method in class mpicbg.imglib.image.display.BitTypeDisplay
get8BitUnsigned(T) - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
get8BitUnsigned(T) - Method in class mpicbg.imglib.image.display.Display
get8BitUnsigned(RGBALegacyType) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
get8BitUnsigned(T) - Method in class mpicbg.imglib.image.display.IntegerTypeDisplay
get8BitUnsigned(T) - Method in class mpicbg.imglib.image.display.RealTypeDisplay
getAccessor() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
getActiveCursors() - Method in class mpicbg.imglib.image.Image: Return all active Cursors currently instantiated for this Image.
getAdditionalNormalization() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getAllowedToMoveInDim() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getAllowMaximaTolerance() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getAllShifts() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getAlpha() - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory
getArea(T) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
getArea(T) - Method in class mpicbg.imglib.labeling.Labeling: Return the area or suitable N-d analog of the labeled object
getArea(T) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: Return the area of the labeled object in units of pixels or the volume of the labeled object in voxels (or the hyper-volume of the 4/5-d object in ?toxels? or ?spectracels? or ?spectratoxels?)
getArrayFromValue(double, int) - Static method in class mpicbg.imglib.util.Util
getArrayFromValue(float, int) - Static method in class mpicbg.imglib.util.Util
getArrayFromValue(int, int) - Static method in class mpicbg.imglib.util.Util
getArrayIndex() - Method in interface mpicbg.imglib.cursor.Cursor
getArrayIndex() - Method in class mpicbg.imglib.cursor.CursorImpl
getArrayIndex() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getArrayIndex() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getArrayIndex() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getArrayIndex() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
getArrayIndex() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getArrayIndex() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getBackground() - Method in class mpicbg.imglib.container.shapelist.ShapeList
getBeginBandPassRadius() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getBin(T) - Method in class mpicbg.imglib.algorithm.histogram.Histogram: Returns the bin corresponding to a given Type.
getBin(HistogramKey<T>) - Method in class mpicbg.imglib.algorithm.histogram.Histogram: Returns the bin corresponding to a given HistogramKey.
getBitDepth() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
getCacheSize() - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
getCaching() - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
getCalibration() - Method in class mpicbg.imglib.image.Image
getCalibration(int) - Method in class mpicbg.imglib.image.Image
getCanMoveOutside() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getCell(int) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellData(int) - Method in class mpicbg.imglib.cursor.cell.CellCursor
getCellData(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
getCellData(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
getCellData(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
getCellId() - Method in class mpicbg.imglib.container.cell.Cell
getCellIndex(ArrayLocalizableByDimCursor<FakeType>, int[]) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellIndex(ArrayLocalizableByDimCursor<FakeType>, int, int) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellIndexFromImageCoordinates(ArrayLocalizableByDimCursor<FakeType>, int[]) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellPosition(int[]) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellPosition(int[], int[]) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellPosition(int, int) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellSize(int) - Method in class mpicbg.imglib.container.cell.CellContainer
getCellSize() - Method in class mpicbg.imglib.container.cell.CellContainer
getCenter() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin
getChannels() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getChar() - Method in class mpicbg.imglib.type.label.BasePairCharType
getChart() - Method in class script.imglib.analysis.BarChart
getClearedList() - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression: Creates a new ArrayList that only contains all DifferenceOfGaussianPeaks that are valid.
getClipping() - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory
getCodedSignedByte(int) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getCodedSignedByteChecked(int) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getCodedSignedInt(long) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getCodedSignedIntChecked(long) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getCodedSignedShort(int) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getCodedSignedShortChecked(int) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getCoefficients() - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator: A method that provides the DCT coefficients
getCommonFadeOutDistance() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
getCommonRelativeFadeOutDistance() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
getComplexDisplayValue(T) - Method in class mpicbg.imglib.image.display.ComplexTypeComplexValueDisplay
getComplexDisplayValue(T) - Method in class mpicbg.imglib.image.display.ComplexTypePhaseSpectrumDisplay
getComplexDisplayValue(T) - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
getComplexDisplayValue(T) - Method in class mpicbg.imglib.image.display.ComplexTypeRealValueDisplay
getComplexDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
getComplexDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
getComplexDouble() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getComplexDouble() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getComplexFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
getComplexFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
getComplexFloat() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getComplexFloat() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getComputeConvolutionsParalell() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getComputeFFTinParalell() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getConditionsSatisfied() - Method in interface imglib.ops.observer.IterationStatus
getContainer() - Method in class mpicbg.imglib.image.Image: Returns the Container that is used for storing the image data.
getContainerFactory() - Method in class mpicbg.imglib.image.Image: Returns the ContainerFactory of this Image.
getContainerFactory() - Method in class mpicbg.imglib.image.ImageFactory
getConvolvedImage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution
getConvolvedImage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution2
getConvolvedImage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getCount() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin
getCropBackToOriginalSize() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getCrossCorrelationPeak() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getCurrentCell() - Method in class mpicbg.imglib.cursor.cell.CellCursor
getCurrentStorageArray() - Method in interface mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.BitArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.CharArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.FakeArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.IntArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.LongArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
getCurrentStorageArray() - Method in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
getCursorCacheInstance() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCache
getCursorCacheInstance() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCacheFIFO
getCursorPosition(int[]) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getCursors(Collection<Cursor<T>>) - Method in class mpicbg.imglib.image.Image: Put all Cursors currently instantiated into a Collection.
getCursors() - Method in class mpicbg.imglib.image.Image: Return all Cursors currently instantiated for this Image in a new ArrayList.
getCustomOutOfBoundsStrategy() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getData() - Method in class mpicbg.imglib.container.cell.Cell
getDefaultDisplay(Image<LabelingType<T>>) - Method in class mpicbg.imglib.labeling.LabelingType
getDefaultDisplay(Image<BasePairBitType>) - Method in class mpicbg.imglib.type.label.BasePairBitType
getDefaultDisplay(Image<BasePairCharType>) - Method in class mpicbg.imglib.type.label.BasePairCharType
getDefaultDisplay(Image<FakeType>) - Method in class mpicbg.imglib.type.label.FakeType
getDefaultDisplay(Image<BitType>) - Method in class mpicbg.imglib.type.logic.BitType
getDefaultDisplay(Image<T>) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getDefaultDisplay(Image<T>) - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
getDefaultDisplay(Image<T>) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getDefaultDisplay(Image<RGBALegacyType>) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
getDefaultDisplay(Image<T>) - Method in interface mpicbg.imglib.type.Type: The Type creates the default Display for displaying the image contents.
getDepth() - Method in class mpicbg.imglib.container.array.Array3D
getDepth() - Method in interface mpicbg.imglib.container.Container3D
getDepth() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getDerivativeVector(LocalizableByDimCursor<T>, Image<DoubleType>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: This method is called by the process method to allow to override how the derivative vector is computed
getDim3(int[]) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
getDimension() - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
getDimension(int) - Method in interface mpicbg.imglib.container.Container
getDimension(int) - Method in class mpicbg.imglib.container.ContainerImpl
getDimension(int) - Method in interface mpicbg.imglib.container.ImageProperties
getDimension(int) - Method in class mpicbg.imglib.image.Image
getDimensions(int[]) - Method in class mpicbg.imglib.container.cell.Cell
getDimensions(int[]) - Method in interface mpicbg.imglib.container.Container
getDimensions() - Method in interface mpicbg.imglib.container.Container
getDimensions() - Method in class mpicbg.imglib.container.ContainerImpl
getDimensions(int[]) - Method in class mpicbg.imglib.container.ContainerImpl
getDimensions() - Method in interface mpicbg.imglib.container.ImageProperties
getDimensions(int[]) - Method in interface mpicbg.imglib.container.ImageProperties
getDimensions() - Method in class mpicbg.imglib.cursor.CursorImpl
getDimensions(int[]) - Method in class mpicbg.imglib.cursor.CursorImpl
getDimensions() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getDimensions(int[]) - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getDimensions() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getDimensions(int[]) - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getDimensions() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getDimensions(int[]) - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getDimensions() - Method in interface mpicbg.imglib.cursor.vector.Dimensionality
getDimensions(int[]) - Method in interface mpicbg.imglib.cursor.vector.Dimensionality
getDimensions() - Method in class mpicbg.imglib.image.Image
getDimensions(int[]) - Method in class mpicbg.imglib.image.Image
getDimensions() - Method in class mpicbg.imglib.labeling.BoundingBox
getDimensions() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getDimensions(int[]) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getDirectory() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
getDisplay() - Method in class mpicbg.imglib.image.Image: Return the current Display of the Image
getDistanceSquared() - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Return the square distance measured from the center of the disc to the current cursor position, in physical units.
getDoGImage() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getDoGPeaks() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getDoScaling() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getDuplicates() - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
getEndBandPassRadius() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getEntitiesPerPixel() - Method in class mpicbg.imglib.labeling.LabelingType
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.label.BasePairBitType
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.label.BasePairCharType
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.label.FakeType
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getEntitiesPerPixel() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
getEntitiesPerPixel() - Method in interface mpicbg.imglib.type.Type
getEntry() - Method in interface mpicbg.imglib.algorithm.kdtree.node.Leaf
getEntry() - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
getEntry() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getErrorMessage() - Method in interface mpicbg.imglib.algorithm.Algorithm
getErrorMessage() - Method in class mpicbg.imglib.algorithm.BenchmarkAlgorithm
getErrorMessage() - Method in class mpicbg.imglib.algorithm.CanvasImage
getErrorMessage() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
getErrorMessage() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory
getErrorMessage() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Returns any error messages.
getErrorMessage() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Returns any error messages.
getErrorMessage() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getErrorMessage() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getErrorMessage() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getErrorMessage() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getErrorMessage() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getErrorMessage() - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
getErrorMessage() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getErrorMessage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getErrorMessage() - Method in class mpicbg.imglib.algorithm.histogram.Histogram
getErrorMessage() - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
getErrorMessage() - Method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
getErrorMessage() - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D
getErrorMessage() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
getErrorMessage() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks
getErrorMessage() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
getErrorMessage() - Method in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
getErrorMessage() - Method in class mpicbg.imglib.algorithm.peak.GaussianPeakFitterND
getErrorMessage() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
getErrorMessage() - Method in class mpicbg.imglib.algorithm.roi.MorphClose
getErrorMessage() - Method in class mpicbg.imglib.algorithm.roi.MorphOpen
getErrorMessage() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
getErrorMessage() - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression
getErrorMessage() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getErrorMessage() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getErrorMessage() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getErrorMessage() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getErrorMessage() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
getErrorMessage() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getErrorMessage() - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.container.cell.CellContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.container.constant.ConstantContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
getErrorMessage() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
getErrorMessage() - Method in interface mpicbg.imglib.Factory
getErrorMessage() - Method in class mpicbg.imglib.image.ImageFactory
getErrorMessage() - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
getErrorMessage() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory
getExponent() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
getExtendedImageSize(Image<?>, int[]) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getExtendedSize() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getExtendImageByKernelSize() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getExtents(int[], int[]) - Method in class mpicbg.imglib.labeling.BoundingBox: the minimum and maximum extents of the box
getExtents(T, int[], int[]) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
getExtents(T, int[], int[]) - Method in class mpicbg.imglib.labeling.Labeling: find the coordinates of the bounding box around the given label.
getExtents(T, int[], int[]) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: Get the extents of the bounding box around the labeled object
getFactory() - Method in class mpicbg.imglib.container.array.Array
getFactory() - Method in class mpicbg.imglib.container.constant.ConstantContainer
getFactory() - Method in interface mpicbg.imglib.container.Container
getFactory() - Method in class mpicbg.imglib.container.ContainerImpl
getFactory() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getFactory() - Method in class mpicbg.imglib.container.planar.PlanarContainer
getFactory() - Method in class mpicbg.imglib.container.shapelist.ShapeList
getFadeOutDistance() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
getFFOptimization() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getFFTInputOffset() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getFFTInputSize() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getFileName(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
getFitValue() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getFloatFactory() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
getFloatImage() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
getFrames() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getGaussianConvolution(double[], int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: This method returns the OutputAlgorithm that will compute the Gaussian Convolutions, more efficient versions can override this method
getGaussianConvolution(double[], int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal: This method returns the OutputAlgorithm that will compute the Gaussian Convolutions, more efficient versions can override this method
getGaussianConvolution(double[], int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal1: This method returns the OutputAlgorithm that will compute the Gaussian Convolutions, more efficient versions can override this method
getGaussianKernel(ImageFactory<T>, double, int) - Static method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getGaussianKernel(ImageFactory<T>, double[]) - Static method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getGradientImage() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Return a difference of gaussian image that measures the gradient at a scale defined by the two sigmas of the gaussians.
getHeight() - Method in class mpicbg.imglib.container.array.Array3D
getHeight() - Method in interface mpicbg.imglib.container.Container3D
getHeight() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getHessianMatrix(LocalizableByDimCursor<T>, Image<DoubleType>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: This method is called by the process method to allow to override how the hessian matrix is computed
getId() - Method in interface mpicbg.imglib.container.Container
getId() - Method in class mpicbg.imglib.container.ContainerImpl
getImage() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getImage() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getImage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getImage() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
getImage() - Method in interface mpicbg.imglib.cursor.Cursor
getImage() - Method in class mpicbg.imglib.cursor.CursorImpl
getImage() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getImage() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getImage() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getImage() - Method in class mpicbg.imglib.image.display.Display
getImage() - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
getImage() - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the typed image the interpolator is working on
getImage() - Method in class mpicbg.imglib.interpolation.InterpolatorImpl: Returns the typed image the interpolator is working on
getImage() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D: Returns the typed image the interpolator is working on
getImage() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D: Returns the typed image the interpolator is working on
getImage() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D: Returns the typed image the interpolator is working on
getImage() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getImage() - Method in class script.imglib.analysis.Histogram
getImageArray() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns the stack as an array of 1D pixel arrays.
getImageArray() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns the stack as an array of 1D pixel arrays.
getImageExtension() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getImageFactory() - Method in class mpicbg.imglib.image.Image: Returns the ImageFactory of this Image.
getImageOutOfBoundsStrategy() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getImagePlus() - Method in class mpicbg.imglib.container.imageplus.ByteImagePlus
getImagePlus() - Method in class mpicbg.imglib.container.imageplus.FloatImagePlus
getImagePlus() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getImagePlus() - Method in class mpicbg.imglib.container.imageplus.IntImagePlus
getImagePlus() - Method in class mpicbg.imglib.container.imageplus.ShortImagePlus
getImageType() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getImgValue() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getIncrement() - Method in class script.imglib.analysis.Histogram
getIncrementalSigmas(double[], double) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getIndex(int[]) - Method in class mpicbg.imglib.container.planar.PlanarContainer: For a given >=2d location, estimate the pixel index in the stack slice.
getIndex() - Method in interface mpicbg.imglib.type.Type: Returns the current index in the storage array, this is called by the Cursors which iterate over the image.
getIndex() - Method in class mpicbg.imglib.type.TypeImpl
getIndex() - Method in class script.imglib.color.Brightness
getIndex() - Method in class script.imglib.color.fn.HSBOp
getIndex() - Method in class script.imglib.color.Hue
getIndex() - Method in class script.imglib.color.Saturation
getIndexOfPosition(int[], int) - Static method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Given an array of a pixels position, the width of the image, and the number of pixels in a plane, returns the index of the position in a linear array as calculated by x + width * y + numPixInPlane * z.
getIndexOfPosition(int[], int, int) - Static method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Given an array of a pixels position, the width of the image, and the number of pixels in a plane, returns the index of the position in a linear array as calculated by x + width * y + numPixInPlane * z.
getInPlace() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getInPlaceTransform() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getInputImage() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getInputImage() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getInputIterator(Image, Image, int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getInteger() - Method in class mpicbg.imglib.type.logic.BitType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.IntType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.LongType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getInteger() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getInteger() - Method in interface mpicbg.imglib.type.numeric.IntegerType
getIntegerLong() - Method in class mpicbg.imglib.type.logic.BitType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.IntType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.LongType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getIntegerLong() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getIntegerLong() - Method in interface mpicbg.imglib.type.numeric.IntegerType
getIntegerNames(int) - Static method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents: Return an iterator that (endlessly) dispenses increasing integer values for labeling components.
getIntegerValueAtLinearIndex(int) - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getIntegerValueAtLinearIndex(int) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
getIntegerValueAtLinearIndex(int) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
getInternalIndex() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
getInterpolatorFactory() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getInterpolatorFactory() - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
getInterpolatorFactory() - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the typed interpolator factory the Interpolator has been instantiated with.
getInterpolatorFactory() - Method in class mpicbg.imglib.interpolation.InterpolatorImpl: Returns the typed interpolator factory the Interpolator has been instantiated with.
getInvestigateNumPeaks() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getKDTree() - Method in class mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch
getKDTree() - Method in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
getKDTree() - Method in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
getKeepDoGImage() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getKeepImgFFT() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getKeepPhaseCorrelationMatrix() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getKernel() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getKernelSize(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getKernelSize(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution4
getKey() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin: Gets a HistogramKey that may be used to key this HistogramBin into a hash table.
getKeys() - Method in class mpicbg.imglib.algorithm.histogram.Histogram: Returns an ArrayList containing the HistogramKeys generated when calculating this Histogram.
getKeyTypes() - Method in class mpicbg.imglib.algorithm.histogram.Histogram: Returns the center Type corresponding to each HistogramKey generated when calculating this Histogram.
getLabeling() - Method in class mpicbg.imglib.labeling.LabelingType: Get the labels defined at the type's current pixel or
getLabels() - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
getLabels() - Method in class mpicbg.imglib.labeling.Labeling: Find all labels in the space
getLabels() - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: Find all of the labels used to label pixels.
getLaPlaceImage() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getLastPosition() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
getLinearIndexArraySortedByGrayLevel() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getLinkedCursor() - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
getList() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
getLoopSize() - Method in class mpicbg.imglib.multithreading.Chunk
getLowerBound() - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory.RealHistogramBin
getLowerBound() - Method in class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory.DiscreteIntHistogramBin
getLowerBound() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin: Returns the lower bound of this bin.
getMatrix(Image<S>) - Static method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: Converts an Image into a matrix
getMax() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
getMax() - Method in class mpicbg.imglib.image.display.Display
getMax() - Method in class script.imglib.analysis.Histogram
getMaxDim(Image<?>, Image<?>) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getMaximaTolerance() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getMaxNumMoves() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getMaxValue() - Method in class mpicbg.imglib.type.logic.BitType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.IntType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.LongType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
getMaxValue() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getMaxValue() - Method in interface mpicbg.imglib.type.numeric.RealType
getMessage() - Method in interface imglib.ops.observer.IterationStatus
getMin() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
getMin() - Method in class mpicbg.imglib.image.display.Display
getMin() - Method in class script.imglib.analysis.Histogram
getMinBackgroundPeakHeight() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: See setMinBackgroundPeakHeight
getMinExtension() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getMinFadeOutDistance() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
getMinForegroundPeakHeight() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: See setMinForegroundPeakHeight
getMinImageSize() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getMinimalPixelOverlap() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getMinIncrement() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
getMinIncrement() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
getMinIncrement() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getMinIncrement() - Method in interface mpicbg.imglib.type.numeric.RealType
getMinPeakValue() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getMinPeakValue() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
getMinValue() - Method in class mpicbg.imglib.type.logic.BitType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.ByteType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.IntType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.LongType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.ShortType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getMinValue() - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getMinValue() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
getMinValue() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getMinValue() - Method in interface mpicbg.imglib.type.numeric.RealType
getMirrorCoordinate(int[], int[]) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
getMirrorCoordinate(int[], int[]) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
getName() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
getName() - Method in interface mpicbg.imglib.container.ImageProperties
getName() - Method in class mpicbg.imglib.image.Image
getNewImageSize() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getNewImageSize(int) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getNewSize() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getNorm() - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory.RealHistogramBin
getNorm() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin: Returns the norm of this bin.
getNormalizationFactor(int) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getNormalizationThreshold() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getNormalizedSubtraction() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: Returns the function that does the normalized subtraction of the gauss images, more efficient versions can override this method
getNormalizedSubtraction() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal: Returns the function that does the normalized subtraction of the gauss images, more efficient versions can override this method
getNPixels() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor: Return the number of pixels this cursor will iterate on (or, the number of iterations it will do before exhausting).
getNPixels() - Method in class mpicbg.imglib.cursor.special.DiscCursor
getNPixels() - Method in class mpicbg.imglib.cursor.special.SphereCursor
getNumActiveCursors() - Method in class mpicbg.imglib.image.Image: Returns the number of active Cursors instantiated on this Image.
getNumCells(int) - Method in class mpicbg.imglib.container.cell.CellContainer
getNumCells() - Method in class mpicbg.imglib.container.cell.CellContainer
getNumCellsDim() - Method in class mpicbg.imglib.container.cell.CellContainer
getNumCursors() - Method in class mpicbg.imglib.image.Image: Returns the number of Cursors instantiated on this Image.
getNumDimensions() - Method in interface mpicbg.imglib.algorithm.kdtree.node.Leaf
getNumDimensions() - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
getNumDimensions() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getNumDimensions() - Method in interface mpicbg.imglib.container.Container
getNumDimensions() - Method in class mpicbg.imglib.container.ContainerImpl
getNumDimensions() - Method in interface mpicbg.imglib.container.ImageProperties
getNumDimensions() - Method in class mpicbg.imglib.cursor.CursorImpl
getNumDimensions() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getNumDimensions() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getNumDimensions() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getNumDimensions() - Method in interface mpicbg.imglib.cursor.vector.Dimensionality
getNumDimensions() - Method in class mpicbg.imglib.image.Image
getNumDimensions() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getNumEntities() - Method in class mpicbg.imglib.container.cell.Cell
getNumEntities() - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
getNumEntities() - Method in interface mpicbg.imglib.container.PixelGridContainer
getNumEntities(int[], int) - Static method in class mpicbg.imglib.container.PixelGridContainerImpl
getNumEntities() - Method in class mpicbg.imglib.container.PixelGridContainerImpl
getNumEntitiesPerPixel() - Method in interface mpicbg.imglib.container.PixelGridContainer
getNumEntitiesPerPixel() - Method in class mpicbg.imglib.container.PixelGridContainerImpl
getNumPixels() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getNumPixels(int[]) - Static method in class mpicbg.imglib.algorithm.integral.IntegralImage
getNumPixels() - Method in class mpicbg.imglib.container.cell.Cell
getNumPixels() - Method in interface mpicbg.imglib.container.Container
getNumPixels(int[]) - Static method in class mpicbg.imglib.container.ContainerImpl
getNumPixels() - Method in class mpicbg.imglib.container.ContainerImpl
getNumPixels() - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
getNumPixels() - Method in interface mpicbg.imglib.container.ImageProperties
getNumPixels() - Method in class mpicbg.imglib.image.Image
getNumQuanta() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: See setNumQuanta
getNumThreads() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
getNumThreads() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getNumThreads() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getNumThreads() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getNumThreads() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getNumThreads() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getNumThreads() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getNumThreads() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
getNumThreads() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
getNumThreads() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
getNumThreads() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
getNumThreads() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
getNumThreads() - Method in interface mpicbg.imglib.algorithm.MultiThreaded: The number of threads used by the algorithm
getNumThreads() - Method in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
getNumThreads() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
getNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getOffset() - Method in class mpicbg.imglib.algorithm.CanvasImage
getOffset() - Method in class mpicbg.imglib.algorithm.roi.StructuringElement
getOffset() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getOffset(int) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getOffset(int[]) - Method in class mpicbg.imglib.container.cell.Cell
getOffset() - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
getOffset(float[]) - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
getOrigin() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getOriginalInvPCMPosition() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getOriginalOffset() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getOriginalOffset() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getOriginalSize() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getOriginalSize() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getOutOfBoundsStrategyFactory() - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the OutOfBoundsStrategyFactory used for interpolation
getOutOfBoundsStrategyFactory() - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
getOutOfBoundsStrategyFactory() - Method in class mpicbg.imglib.interpolation.InterpolatorImpl: Returns the OutOfBoundsStrategyFactory used for interpolation
getOutputImage() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm: Returns the Image that will eventually become the result of this OutputAlgorithm, and creates it if it has not yet been created.
getOutputImageFactory() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
getOutputImageFactory() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getOutputIterator(Image, Image, int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getParentCursor() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
getParentCursor() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
getParentCursor() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy
getPatchSize() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
getPeakList() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks: Returns an ArrayList containing the locations of peaks in the image associated with this peak picker, as calculated by running the process() method.
getPeakList() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform: Returns an ArrayList of int arrays, representing the positions in the vote space that correspond to peaks.
getPeaks() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getPeaks() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getPeaks() - Method in class script.imglib.analysis.DoGPeaks: Get all peaks as DifferenceOfGaussianPeak instances.
getPeakType() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getPhaseCorrelationMatrix() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getPhaseCorrelationPeak() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getPhaseDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getPhaseDouble() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getPhaseDouble() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getPhaseFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getPhaseFloat() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getPhaseFloat() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getPhi() - Method in class mpicbg.imglib.cursor.special.DiscCursor: Return the azimuth of the spherical coordinates of this cursor, with respect to its center.
getPhi() - Method in class mpicbg.imglib.cursor.special.SphereCursor: Return the azimuth of the spherical coordinates of this cursor, with respect to its center.
getPhysicalRelativeCoordinates(double[]) - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Return the relative calibrated position of this cursor in physical units.
getPixels(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns the pixel array for the specified slice, where 1<=n<=nslices.
getPixels(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns the pixel array for the specified slice, where 1<=n<=nslices.
getPlanarAccess(Image<?>) - Static method in class mpicbg.imglib.io.ImageOpener: Obtains planar access instance backing the given image, if any.
getPlane(int) - Method in interface mpicbg.imglib.container.basictypecontainer.PlanarAccess
getPlane(int) - Method in class mpicbg.imglib.container.planar.PlanarContainer
getPos(int[]) - Method in class mpicbg.imglib.container.array.Array
getPos(int, int, int) - Method in class mpicbg.imglib.container.array.Array3D
getPos(int[]) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
getPosGlobal(int[]) - Method in class mpicbg.imglib.container.cell.Cell
getPosition() - Method in interface imglib.ops.observer.IterationStatus
getPosition() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getPosition(int[]) - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
getPosition() - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
getPosition(int) - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
getPosition(int[]) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getPosition() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getPosition(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getPosition(int[]) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getPosition() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getPosition() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getPosition() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
getPosition() - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
getPosition(int) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
getPosition(int[]) - Method in class mpicbg.imglib.cursor.link.NullLink
getPosition() - Method in class mpicbg.imglib.cursor.link.NullLink
getPosition(int) - Method in class mpicbg.imglib.cursor.link.NullLink
getPosition(int[]) - Method in interface mpicbg.imglib.cursor.Localizable: Write the current position into the passed array.
getPosition() - Method in interface mpicbg.imglib.cursor.Localizable: Return a copy of the current position.
getPosition(int) - Method in interface mpicbg.imglib.cursor.Localizable: Return the current position in a given dimension.
getPosition(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
getPosition() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getPosition() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
getPosition() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getPosition() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getPosition() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getPosition(int) - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getPosition(int[]) - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getPosition() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getPosition(int) - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getPosition(int[]) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
getPosition(int) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
getPosition(int[]) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
getPosition(int) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.Vector
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.Vector1d
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.Vector2d
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.Vector3d
getPosition(int) - Method in class mpicbg.imglib.cursor.vector.Vector4d
getPosition(float[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the positon of the interpolator.
getPosition() - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the positon of the interpolator.
getPosition(float[]) - Method in class mpicbg.imglib.interpolation.InterpolatorImpl
getPosition() - Method in class mpicbg.imglib.interpolation.InterpolatorImpl
getPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
getPosition() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
getPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
getPosition() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
getPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
getPosition() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
getPosition(int[]) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getPosition() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getPosition(int) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getPositionAsString() - Method in class mpicbg.imglib.algorithm.math.LocalizablePoint
getPositionAsString() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getPositionAsString() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
getPositionAsString() - Method in class mpicbg.imglib.cursor.link.NullLink
getPositionAsString() - Method in interface mpicbg.imglib.cursor.Localizable: Create a human-readable String representation of the current position.
getPositionAsString() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getPositionAsString() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getPositionAsString() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getPositionAsString() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getPositionAsString() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getPowerDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getPowerDouble() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getPowerDouble() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getPowerFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getPowerFloat() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getPowerFloat() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
getPreferredRealPrecision() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
getPreferredRealPrecision() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
getPreferredRealPrecision() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getPreferredRealPrecision() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getPreProcessing() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getProcessingTime() - Method in interface mpicbg.imglib.algorithm.Benchmark
getProcessingTime() - Method in class mpicbg.imglib.algorithm.BenchmarkAlgorithm
getProcessingTime() - Method in class mpicbg.imglib.algorithm.CanvasImage
getProcessingTime() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Returns the time necessary to execute the process() method, or in other words how long it takes to find the maxima of the input image.
getProcessingTime() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Returns the time necessary to execute the process() method, or in other words how long it takes to find the maxima of the input image.
getProcessingTime() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getProcessingTime() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getProcessingTime() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getProcessingTime() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getProcessingTime() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getProcessingTime() - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
getProcessingTime() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getProcessingTime() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getProcessingTime() - Method in class mpicbg.imglib.algorithm.histogram.Histogram
getProcessingTime() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
getProcessingTime() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
getProcessingTime() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
getProcessingTime() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
getProcessingTime() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks
getProcessingTime() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
getProcessingTime() - Method in class mpicbg.imglib.algorithm.MultiThreadedBenchmarkAlgorithm
getProcessingTime() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
getProcessingTime() - Method in class mpicbg.imglib.algorithm.roi.MorphClose
getProcessingTime() - Method in class mpicbg.imglib.algorithm.roi.MorphOpen
getProcessingTime() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
getProcessingTime() - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression
getProcessingTime() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
getProcessingTime() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getProcessingTime() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
getProcessingTime() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
getProcessor(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns an ImageProcessor for the specified slice, where 1<=n<=nslices.
getProcessor(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns an ImageProcessor for the specified slice, where 1<=n<=nslices.
getR() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
getRasterStart(T, int[]) - Method in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
getRasterStart(T, int[]) - Method in class mpicbg.imglib.labeling.Labeling: Find the first pixel in a raster scan of the object with the given label.
getRasterStart(T, int[]) - Method in interface mpicbg.imglib.labeling.LabelingCursorStrategy: The coordinates of the first pixel with the given label when raster scanning through the space.
getRealDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
getRealDouble() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
getRealDouble() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getRealDouble() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
getRealDouble() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
getRealDouble() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getRealFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
getRealFloat() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
getRealFloat() - Method in interface mpicbg.imglib.type.numeric.ComplexType
getRealFloat() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
getRealFloat() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
getRealFloat() - Method in class mpicbg.imglib.type.numeric.real.FloatType
getRearrangement() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getRearrangement() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getRecursiveCoordinates(int) - Static method in class mpicbg.imglib.util.Util
getRegionalExtrema() - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
getRegionalExtrema() - Method in interface mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder: Returns the ArrayList containing the coordinates of the local extrema found.
getRegionalExtrema() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Returns the ArrayList containing the coordinates of the regional maxima found.
getRegionalExtrema() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Returns the ArrayList containing the coordinates of the regional maxima found.
getRegionalExtremaCenters() - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
getRegionalExtremaCenters() - Method in interface mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder: Computes the average coordinate of the extrema locations.
getRelativeFadeOutDistance() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getRelativeImageExtension() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getRelativePosition(int[]) - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Store the relative position of the current cursor with respect to the ball center in the array given in argument.
getRelativePosition(int) - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
getRelativePosition(int) - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
getResult() - Method in class mpicbg.imglib.algorithm.CanvasImage
getResult() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
getResult() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
getResult() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
getResult() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
getResult() - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
getResult() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getResult() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getResult() - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
getResult() - Method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
getResult() - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D
getResult() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
getResult() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
getResult() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
getResult() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
getResult() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks
getResult() - Method in interface mpicbg.imglib.algorithm.OutputAlgorithm
getResult() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
getResult() - Method in class mpicbg.imglib.algorithm.roi.MorphClose
getResult() - Method in class mpicbg.imglib.algorithm.roi.MorphOpen
getResult() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
getResult() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getResult() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
getResult() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
getResult() - Method in class script.imglib.algorithm.Process
getRoot() - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
getScale() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Return the scale of the objects to be found.
getShapeListCachingStrategy() - Method in class mpicbg.imglib.container.shapelist.ShapeListCached
getShapeLists() - Method in class mpicbg.imglib.container.shapelist.ShapeList
getShapeType(int, int, int) - Method in class mpicbg.imglib.container.shapelist.ShapeList: Find the upper most Shape visible at the given position and return its Type.
getShapeType(int[]) - Method in class mpicbg.imglib.container.shapelist.ShapeList: Find the upper most Shape visible at the given position and return its Type.
getShift() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getShift() - Method in class script.imglib.color.Alpha
getShift() - Method in class script.imglib.color.Blue
getShift() - Method in class script.imglib.color.Channel
getShift() - Method in class script.imglib.color.fn.ChannelOp
getShift() - Method in class script.imglib.color.Green
getShift() - Method in class script.imglib.color.Red
getShortSliceLabel(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns a shortened version (up to the first 60 characters or first newline and suffix removed) of the label of the specified slice.
getShortSliceLabel(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns a shortened version (up to the first 60 characters or first newline and suffix removed) of the label of the specified slice.
getSigma() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getSigmas() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3: The sigma the image was convolved with
getSigmas(Image<?>, double, int, int) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
getSize() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
getSliceLabel(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns the label of the specified slice, where 1<=n<=nslices.
getSliceLabel(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns the label of the specified slice, where 1<=n<=nslices.
getSliceLabels() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns the slice labels as an array of Strings.
getSliceLabels() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns the slice labels as an array of Strings.
getSlices() - Method in class mpicbg.imglib.container.planar.PlanarContainer
getSortPhaseCorrelation() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
getSourceSigma() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getStandardDimensions() - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
getStartPosition() - Method in class mpicbg.imglib.multithreading.Chunk
getStep(int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
getSteps(int[]) - Method in class mpicbg.imglib.container.cell.Cell
getSteps() - Method in class mpicbg.imglib.container.dynamic.DynamicContainer
getStorageContainer() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.cell.CellCursor
getStorageContainer() - Method in interface mpicbg.imglib.cursor.Cursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.CursorImpl
getStorageContainer() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimOutOfBoundsCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizablePlaneCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getStorageContainer() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getStorageContainer() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getStorageContainer() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.cell.CellCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getStorageIndex() - Method in interface mpicbg.imglib.cursor.Cursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
getStorageIndex() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
getStorageIndex() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getStrel() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
getStructuringElement(int) - Static method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents: Return an array of offsets to the 8-connected (or N-d equivalent) structuring element for the dimension space.
getStructuringElement() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Get the current structuring element.
getSubcursors() - Method in class imglib.ops.operation.MultiImageIterator
getSubPixelPosition() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getSubPixelPosition(float[]) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getSubPixelPosition(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getSubPixelPositionOffset() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getSubPixelPositionOffset(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getSuggestedKernelDiameter(double) - Static method in class mpicbg.imglib.util.Util
getTargetSigma() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
getTempImage1(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution
getTempImage1(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getTempImage2(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution
getTempImage2(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
getTheta() - Method in class mpicbg.imglib.cursor.special.SphereCursor: Return the current inclination with respect to this sphere center.
getThreshold(Image<T>) - Static method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
getTransform() - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
getTransformDescription() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
getTranslatedPeakList() - Method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
getType() - Method in class mpicbg.imglib.algorithm.histogram.HistogramKey
getType() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
getType() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.cell.CellCursor
getType() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
getType() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
getType() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
getType() - Method in interface mpicbg.imglib.cursor.Cursor
getType() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
getType() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
getType() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimCursor
getType() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizablePlaneCursor
getType() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
getType() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
getType() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
getType() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
getType() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
getType() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
getType() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
getType() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
getType() - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
getType() - Method in interface mpicbg.imglib.interpolation.Interpolator: Returns the type which stores the value for the current position of the interpolator
getType() - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
getType() - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
getType() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
getType() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
getType() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy
getType() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
getType() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
getType() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
getType() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue
getTypeConverter(A, B) - Static method in class mpicbg.imglib.type.TypeConverter
getTypeConverter(ByteType, A) - Static method in class mpicbg.imglib.type.TypeConverter
getTypeConverter(UnsignedByteType, A) - Static method in class mpicbg.imglib.type.TypeConverter
getTypeConverter(ShortType, A) - Static method in class mpicbg.imglib.type.TypeConverter
getTypeConverter(UnsignedShortType, A) - Static method in class mpicbg.imglib.type.TypeConverter
getUnsignedByte(byte) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
getUnsignedInt(int) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
getUnsignedShort(short) - Static method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
getUpperBound() - Method in class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory.RealHistogramBin
getUpperBound() - Method in class mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory.DiscreteIntHistogramBin
getUpperBound() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin: Returns the upper bound of this bin.
getValue() - Method in interface imglib.ops.observer.IterationStatus
getValue() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.BitArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.CharArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.IntArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.LongArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
getValue(int) - Method in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.BitAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.ByteAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.CharAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.DoubleAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.FloatAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.IntAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.LongAccess
getValue(int) - Method in interface mpicbg.imglib.container.basictypecontainer.ShortAccess
getValue(int) - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainerAccessor
getValue(int) - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainerAccessor
getValue() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory
getValue() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
getValue() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
getValue() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
getVerifyWithCrossCorrelation() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
getWeight(int[]) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
getWidth() - Method in class mpicbg.imglib.container.array.Array3D
getWidth() - Method in interface mpicbg.imglib.container.Container3D
getWidth() - Method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
getX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getX() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getX() - Method in interface mpicbg.imglib.cursor.Localizable3D
getX() - Method in interface mpicbg.imglib.interpolation.Interpolator1D: Returns the current x coordinate of the interpolator
getX() - Method in interface mpicbg.imglib.interpolation.Interpolator2D: Returns the current x coordinate of the interpolator
getX() - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Returns the current x coordinate of the interpolator
getX() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
getX() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
getX() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
getXYCircleBounds(int, int[]) - Static method in class mpicbg.imglib.cursor.special.Utils: Midpoint circle algorithm: store the bounds of a circle in the given array.
getXYEllipseBounds(int, int, int[]) - Static method in class mpicbg.imglib.cursor.special.Utils: Store the half-widths of a X line to scan to fill an ellipse of given axis lengths.
getY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getY() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getY() - Method in interface mpicbg.imglib.cursor.Localizable3D
getY() - Method in interface mpicbg.imglib.interpolation.Interpolator2D: Returns the current y coordinate of the interpolator
getY() - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Returns the current y coordinate of the interpolator
getY() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
getY() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
getZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
getZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
getZ() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
getZ() - Method in interface mpicbg.imglib.cursor.Localizable3D
getZ() - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Returns the current z coordinate of the interpolator
getZ() - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
getZeroPaddingSize(int[], FourierTransform.FFTOptimization) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
gLog(double, double) - Static method in class mpicbg.imglib.util.Util
gLog(float, float) - Static method in class mpicbg.imglib.util.Util
gLogInv(double, double) - Static method in class mpicbg.imglib.util.Util
gLogInv(float, float) - Static method in class mpicbg.imglib.util.Util
grad(double[], double[], int) - Method in interface mpicbg.imglib.algorithm.peak.FitFunction: Evaluate the gradient value of the function, taken with respect to the ak^th parameter, evaluated at point x.
grad(double[], double[], int) - Method in class mpicbg.imglib.algorithm.peak.GaussianMultiDLM: Partial derivatives indices are ordered as follow:
GradientWatershed<T extends RealType<T>,L extends Comparable<L>> - Class in mpicbg.imglib.algorithm.labeling: This class labels an image where the objects in question have edges that are defined by sharp intensity gradients and have centers of high intensity and a low intensity background.
GradientWatershed(Image<T>, double[], double[], double[], Iterator<L>) - Constructor for class mpicbg.imglib.algorithm.labeling.GradientWatershed: Constructor
GRAY32 - Static variable in class mpicbg.imglib.image.display.imagej.ImageJFunctions
GRAY8 - Static variable in class mpicbg.imglib.image.display.imagej.ImageJFunctions
green(int) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
Green - Class in script.imglib.color: TODO
Green(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Green: Extract the green channel of each pixel, in the range [0, 255].

H

handleFailure(DifferenceOfGaussianPeak<T>, String) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
has_next - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
hasDuplicates() - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
hashCode() - Method in class mpicbg.imglib.algorithm.histogram.HistogramKey
hasNext() - Method in class imglib.ops.operation.MultiImageIterator
hasNext() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
hasNext() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
hasNext() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
hasNext() - Method in class mpicbg.imglib.cursor.cell.CellCursor
hasNext() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
hasNext() - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
hasNext() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
hasNext() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor: Assumes that position is not out of bounds.
hasNext() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor: TODO Not the most efficient way to calculate this on demand.
hasNext() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor: TODO Not the most efficient way to calculate this on demand.
hasNext() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
hasNext() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
hasNext() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
hasNext() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
hasNext() - Method in class mpicbg.imglib.cursor.imageplus.ImagePlusCursor2D
hasNext - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
hasNext() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor: Note: This test is fragile in a sense that it returns true for elements after the last element as well.
hasNext() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor2D
hasNext() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
hasNext() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
hasNext() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor: Assumes that position is not out of bounds.
hasNext() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor: TODO Not the most efficient way to calculate this on demand.
hasNext() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor: TODO Not the most efficient way to calculate this on demand.
hasNext() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
hasNext - Variable in class mpicbg.imglib.cursor.special.AbstractSpecialCursor: True if the iteration is not done yet.
hasNext() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
hasNext() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
hasNext() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
hasNext() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
hasNext() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
hasNext() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
hasNext() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
height - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
hessian(double[], double[], int, int) - Method in class mpicbg.imglib.algorithm.peak.GaussianMultiDLM: Not used but hey.
Histogram<T extends Type<T>> - Class in mpicbg.imglib.algorithm.histogram: Implements a Histogram over an Image.
Histogram(HistogramBinFactory<T>, Cursor<T>) - Constructor for class mpicbg.imglib.algorithm.histogram.Histogram: Create a Histogram using the given factory, calculating from the given Cursor.
Histogram<T extends RealType<T>> - Class in script.imglib.analysis: An histogram of the image (or an image computed from an IFunction) between its minimum and maximum values, with as many bins as desired (defaults to 256 bins).
Histogram(Object) - Constructor for class script.imglib.analysis.Histogram
Histogram(Object, Number) - Constructor for class script.imglib.analysis.Histogram
Histogram(Object, int) - Constructor for class script.imglib.analysis.Histogram
Histogram(Object, int, double, double) - Constructor for class script.imglib.analysis.Histogram
HistogramBin<T extends Type<T>> - Class in mpicbg.imglib.algorithm.histogram: HistogramBin is used by to represent the bins of a histogram.
HistogramBin(T, HistogramKey<T>) - Constructor for class mpicbg.imglib.algorithm.histogram.HistogramBin: Create a HistogramBin centered at t, and keyed by HistogramKey k.
HistogramBinFactory<T extends Type<T>> - Interface in mpicbg.imglib.algorithm.histogram: The HistogramBinFactory interface is used by Histogram to generate HistogramBins and HistogramKeys.
HistogramKey<T extends Type<T>> - Class in mpicbg.imglib.algorithm.histogram: HistogramKeys are used by Histogram to key HistogramBins into a HashTable.
HistogramKey(int, T, HistogramBinFactory<T>) - Constructor for class mpicbg.imglib.algorithm.histogram.HistogramKey: Create a HistogramKey with hash code hc, representative t, and HistogramBinFactory factory.
HoughLineTransform<S extends RealType<S>,T extends Type<T> & Comparable<T>> - Class in mpicbg.imglib.algorithm.transformation: A class that extends HoughTransform to handle Hough Line voting over an edge map.
HoughLineTransform(Image<T>, S) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Create a HoughLineTransform to operate against a given Image, with a specific Type of vote space.
HoughLineTransform(Image<T>, int, S) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Create a HoughLineTransform to operate against a given Image, with a specific Type of vote space and theta-resolution.
HoughLineTransform(Image<T>, int, int, S) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Create a HoughLineTransform to operate against a given Image, with a specific Type of vote space and rho- and theta-resolution.
HoughLineTransform(Image<T>, ImageFactory<S>, int, int) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Create a HoughLineTransform to operate against a given Image, with a specific ImageFactory for the vote space, and specific rho- and theta-resolution.
HoughLineTransform<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
HoughLineTransform(Image<T>) - Constructor for class script.imglib.algorithm.HoughLineTransform: A HoughLineTransform with a LongType vote space.
HoughLineTransform(IFunction) - Constructor for class script.imglib.algorithm.HoughLineTransform
HoughTransform<S extends RealType<S>,T extends Type<T> & Comparable<T>> - Class in mpicbg.imglib.algorithm.transformation: This abstract class provides some basic functionality for use with arbitrary Hough-like transforms.
HoughTransform(Image<T>, int[], S) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughTransform: Constructor for a HoughTransform using an ArrayContainerFactory to back the ImageFactory used to generate the voteSpace image.
HoughTransform(Image<T>, int[], ImageFactory<S>) - Constructor for class mpicbg.imglib.algorithm.transformation.HoughTransform: Constructor for a HoughTransform with a specific ImageFactory.
HSB - Class in script.imglib.color: TODO
HSB(IFunction, IFunction, IFunction) - Constructor for class script.imglib.color.HSB
HSB(Image<? extends RealType<?>>) - Constructor for class script.imglib.color.HSB: Interpret the @param img as an HSB image.
HSB(Object, Object, Object) - Constructor for class script.imglib.color.HSB: Accepts only Image, Number, IFunction instances or null as arguments.
HSB(Object, Object) - Constructor for class script.imglib.color.HSB: Accepts only Image, Number, IFunction instances or null as arguments.
HSB(Object) - Constructor for class script.imglib.color.HSB: Accepts only Image, Number, IFunction instances or null as arguments.
HSB(IFunction, int) - Constructor for class script.imglib.color.HSB: Creates an HSB with only the given channel filled, from 1 to 4, where HSB is really ARGB and thus A=4, R=3, G=2, B=1.
HSB(Object, int) - Constructor for class script.imglib.color.HSB: Creates an HSB with only the given channel filled, from 1 to 4, where HSB is really ARGB and thus A=4, R=3, G=2, B=1.
HSBOp - Class in script.imglib.color.fn: TODO
HSBOp(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.fn.HSBOp
Hue - Class in script.imglib.color: TODO
Hue(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Hue: Extract the hue component of each pixel, in the range [0, 1].
HyperSphereIterator<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: Iterate over all pixels in an n-dimensional sphere.
HyperSphereIterator(Image<T>, Localizable, int) - Constructor for class mpicbg.imglib.cursor.special.HyperSphereIterator
HyperSphereIterator(Image<T>, Localizable, int, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.special.HyperSphereIterator
Hypot - Class in script.imglib.math: TODO
Hypot(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Hypot
Hypot(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Hypot
Hypot(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Hypot
Hypot(IFunction, IFunction) - Constructor for class script.imglib.math.Hypot
Hypot(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Hypot
Hypot(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Hypot
Hypot(IFunction, Number) - Constructor for class script.imglib.math.Hypot
Hypot(Number, IFunction) - Constructor for class script.imglib.math.Hypot
Hypot(Number, Number) - Constructor for class script.imglib.math.Hypot

I

i - Variable in class mpicbg.imglib.type.TypeImpl
id - Variable in class mpicbg.imglib.container.ContainerImpl
IEEEremainder - Class in script.imglib.math: TODO
IEEEremainder(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(IFunction, IFunction) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(IFunction, Number) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(Number, IFunction) - Constructor for class script.imglib.math.IEEEremainder
IEEEremainder(Number, Number) - Constructor for class script.imglib.math.IEEEremainder
IFunction - Interface in script.imglib.math.fn: TODO
image - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
image - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
image - Variable in class mpicbg.imglib.cursor.CursorImpl
image - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
image - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
Image<T extends Type<T>> - Class in mpicbg.imglib.image: TODO
Image(Container<T>, T) - Constructor for class mpicbg.imglib.image.Image
Image(Container<T>, T, String) - Constructor for class mpicbg.imglib.image.Image
Image(ImageFactory<T>, int[], String) - Constructor for class mpicbg.imglib.image.Image
ImageCalculator<S extends Type<S>,T extends Type<T>,U extends Type> - Class in mpicbg.imglib.algorithm.math: TODO
ImageCalculator(Image<S>, Image<T>, Image, Function<S, T, U>) - Constructor for class mpicbg.imglib.algorithm.math.ImageCalculator
ImageCalculator(Image<S>, Image<T>, ImageFactory, Function<S, T, U>) - Constructor for class mpicbg.imglib.algorithm.math.ImageCalculator
ImageCalculatorInPlace<S extends Type<S>,T extends Type<T>> - Class in mpicbg.imglib.algorithm.math: TODO
ImageCalculatorInPlace(Image<S>, Image<T>, Function<S, T, S>) - Constructor for class mpicbg.imglib.algorithm.math.ImageCalculatorInPlace
ImageComputation<T extends Type<T>> - Interface in script.imglib.math.fn: TODO
ImageConverter<S extends Type<S>,T extends Type<T>> - Class in mpicbg.imglib.algorithm.math: TODO
ImageConverter(Image<S>, Image<T>, Converter<S, T>) - Constructor for class mpicbg.imglib.algorithm.math.ImageConverter
ImageConverter(Image<S>, ImageFactory<T>, Converter<S, T>) - Constructor for class mpicbg.imglib.algorithm.math.ImageConverter
ImageFactory<T extends Type<T>> - Class in mpicbg.imglib.image: TODO
ImageFactory(T, ContainerFactory) - Constructor for class mpicbg.imglib.image.ImageFactory
ImageFunction - Class in script.imglib.math.fn: TODO
ImageFunction(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.fn.ImageFunction
ImageJFunctions - Class in mpicbg.imglib.image.display.imagej: TODO
ImageJFunctions() - Constructor for class mpicbg.imglib.image.display.imagej.ImageJFunctions
ImageJVirtualDisplay<T extends Type<T>> - Class in mpicbg.imglib.image.display.imagej: TODO
ImageJVirtualDisplay(Collection<InverseTransformDescription<T>>, int[], int, int[], int[]) - Constructor for class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
ImageJVirtualStack<T extends Type<T>> - Class in mpicbg.imglib.image.display.imagej: TODO
ImageJVirtualStack(Image<T>, int, int[], int[]) - Constructor for class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Constructs a virtual stack of up to 3 arbitrary dimensions Image img - the image int type - the type of the Virtual Stack (ImageJFunctions.GRAY8, ImageJFunctions.GRAY32 or ImageJFunctions.COLOR_RGB) int[] dim - which dimensions to display, can be up to three, but at least one.
ImageJVirtualStack(Image<T>, int[], int[]) - Constructor for class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Constructs a virtual stack of type ImageJFunctions.GRAY32 of up to 3 arbitrary dimensions Image img - the image int[] dim - which dimensions to display, can be up to three, but at least one.
ImageOpener - Class in mpicbg.imglib.io: Reads in an imglib Image using Bio-Formats.
ImageOpener() - Constructor for class mpicbg.imglib.io.ImageOpener
ImagePlusAdapter - Class in mpicbg.imglib.image: TODO
ImagePlusAdapter() - Constructor for class mpicbg.imglib.image.ImagePlusAdapter
ImagePlusContainer<T extends Type<T>,A extends ArrayDataAccess<A>> - Class in mpicbg.imglib.container.imageplus: A Container that stores data in an aray of 2d-slices each as a linear array of basic types.
ImagePlusContainer(ImagePlusContainerFactory, int, int, int, int, int, int) - Constructor for class mpicbg.imglib.container.imageplus.ImagePlusContainer
ImagePlusContainerFactory - Class in mpicbg.imglib.container.imageplus: Factory that creates an appropriate ImagePlusContainer.
ImagePlusContainerFactory() - Constructor for class mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
ImagePlusCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus: Basic Iterator for a ImagePlusContainers
ImagePlusCursor(ImagePlusContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusCursor
ImagePlusCursor2D<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus: Basic Iterator for 2d ImagePlusContainers
ImagePlusCursor2D(ImagePlusContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusCursor2D
ImagePlusLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus: Positionable for a ImagePlusContainers
ImagePlusLocalizableByDimCursor(ImagePlusContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimCursor
ImagePlusLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus: Positionable with OutOfBoundsStrategy for a ImagePlusContainers
ImagePlusLocalizableByDimOutOfBoundsCursor(ImagePlusContainer<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimOutOfBoundsCursor
ImagePlusLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus: Localizing Iterator for a ImagePlusContainers
ImagePlusLocalizableCursor(ImagePlusContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableCursor
ImagePlusLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.imageplus
ImagePlusLocalizablePlaneCursor(ImagePlusContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.imageplus.ImagePlusLocalizablePlaneCursor
ImageProperties - Interface in mpicbg.imglib.container: TODO
ImageTransform<T extends Type<T>> - Class in mpicbg.imglib.algorithm.transformation: TODO
ImageTransform(Image<T>, BT, InterpolatorFactory<T>) - Constructor for class mpicbg.imglib.algorithm.transformation.ImageTransform
img - Variable in class mpicbg.imglib.algorithm.integral.IntegralImage
img - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
img - Variable in class mpicbg.imglib.cursor.special.AbstractSpecialCursor: The Image this cursors operates on.
img - Variable in class mpicbg.imglib.image.display.Display
img - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl
ImgLib - Class in script.imglib: A simple wrapper class that is supposed to contain only functions for scripting.
ImgLib() - Constructor for class script.imglib.ImgLib
imglib.ops.condition - package imglib.ops.condition
imglib.ops.function - package imglib.ops.function
imglib.ops.function.p1 - package imglib.ops.function.p1
imglib.ops.function.p2 - package imglib.ops.function.p2
imglib.ops.function.pn - package imglib.ops.function.pn
imglib.ops.observer - package imglib.ops.observer
imglib.ops.operation - package imglib.ops.operation
imglib.ops.operator - package imglib.ops.operator
imglib.ops.operator.binary - package imglib.ops.operator.binary
imglib.ops.operator.unary - package imglib.ops.operator.unary
ImgLib1 - Class in mpicbg.imglib.wrapper: Provides non-copying wrapping from Imglib1 to Imglib2 (cell, array)
ImgLib1() - Constructor for class mpicbg.imglib.wrapper.ImgLib1
ImgLib2 - Class in mpicbg.imglib.wrapper: Provides non-copying wrapping from Imglib2 to Imglib1 (cell, array)
ImgLib2() - Constructor for class mpicbg.imglib.wrapper.ImgLib2
ImgLibException - Exception in mpicbg.imglib.exception: TODO
ImgLibException(String) - Constructor for exception mpicbg.imglib.exception.ImgLibException
ImgLibException(Object, String) - Constructor for exception mpicbg.imglib.exception.ImgLibException
ImgLibException() - Constructor for exception mpicbg.imglib.exception.ImgLibException
imp - Variable in class mpicbg.imglib.container.imageplus.ByteImagePlus
imp - Variable in class mpicbg.imglib.container.imageplus.FloatImagePlus
imp - Variable in class mpicbg.imglib.container.imageplus.IntImagePlus
imp - Variable in class mpicbg.imglib.container.imageplus.ShortImagePlus
inc() - Method in class mpicbg.imglib.algorithm.histogram.HistogramBin: Increment the count.
inc() - Method in class mpicbg.imglib.type.logic.BitType
inc() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
inc() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
inc() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
inc() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
inc() - Method in class mpicbg.imglib.type.numeric.integer.LongType
inc() - Method in class mpicbg.imglib.type.numeric.real.FloatType
inc() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
inc() - Method in interface mpicbg.imglib.type.numeric.RealType
incIndex() - Method in class mpicbg.imglib.type.label.BasePairBitType
incIndex(int) - Method in class mpicbg.imglib.type.label.BasePairBitType
incIndex() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
incIndex(int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
incIndex() - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
incIndex(int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
incIndex() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
incIndex(int) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
incIndex() - Method in interface mpicbg.imglib.type.Type: Increases the array index, this is called by the Cursors which iterate over the image.
incIndex(int) - Method in interface mpicbg.imglib.type.Type: Increases the index by increment steps, this is called by the Cursors which iterate over the image.
incIndex() - Method in class mpicbg.imglib.type.TypeImpl
incIndex(int) - Method in class mpicbg.imglib.type.TypeImpl
incPlaneA - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
incPlaneA - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
incPlaneA - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
incPlaneB - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
incPlaneB - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
incPlaneB - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
index - Variable in class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
indexToPosition(int, int[], int[]) - Static method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
inDoubles(int, IFunction) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type DoubleType with as many threads as desired.
inDoubles(IFunction) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type DoubleType.
inDoubles(Image<? extends RealType<?>>) - Static method in class script.imglib.math.Compute: Convenience method to avoid confusion with script wrappers that are themselves Image rather than IFunction; this method ends up creating a copy of the image, in DoubleType.
inFloats(IFunction) - Static method in class script.imglib.math.Compute: Execute the given op IFunction, which runs for each pixel, and store the results in an Image of type FloatType.
inFloats(int, IFunction) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type FloatType with as many threads as desired.
inFloats(Image<? extends RealType<?>>) - Static method in class script.imglib.math.Compute: Convenience method to avoid confusion with script wrappers that are themselves Image rather than IFunction; this method ends up creating a copy of the image, in FloatType.
initOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Fired by the parent cursor in case that it leaves image bounds
initOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror: For mirroring, there is no difference between leaving the image and moving while being out of image bounds
initOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing: For mirroring, there is no difference between leaving the image and moving while being out of image bounds
initOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
initOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue: Updates the array of the Cursor type to the constant value and sets the index to 0
input - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
inRGBA(int, IFunction) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type RGBALegacyType with as many threads as desired.
inRGBA(IFunction) - Static method in class script.imglib.math.Compute: Execute the given IFunction, which runs for each pixel, and store the results in an Image of type RGBALegacyType with as many threads as desired.
inRGBA(Image<? extends RealType<?>>) - Static method in class script.imglib.math.Compute: Convenience method to avoid confusion with script wrappers that are themselves Image rather than IFunction; this method ends up creating a copy of the image, in RGBALegacyType.
IntAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
IntArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
IntArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.IntArray
IntArray(int[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.IntArray
IntDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
IntDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.IntDynamicContainer
IntDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
IntDynamicContainerAccessor(IntDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.IntDynamicContainerAccessor
integerHoughLine(Image<T>) - Static method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Creates a default HoughLineTransform with vote space.
IntegerType<T extends IntegerType<T>> - Interface in mpicbg.imglib.type.numeric: TODO
IntegerTypeConverter<A extends IntegerType<A>,B extends IntegerType> - Class in mpicbg.imglib.function: Converts an IntegerType into another one without doing any range checking
IntegerTypeConverter() - Constructor for class mpicbg.imglib.function.IntegerTypeConverter
IntegerTypeDisplay<T extends IntegerType<T>> - Class in mpicbg.imglib.image.display: TODO
IntegerTypeDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.IntegerTypeDisplay
IntegerTypeImpl<T extends IntegerTypeImpl<T>> - Class in mpicbg.imglib.type.numeric.integer: TODO
IntegerTypeImpl() - Constructor for class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
integral - Variable in class mpicbg.imglib.algorithm.integral.IntegralImage
IntegralImage<R extends NumericType<R>,T extends NumericType<T>> - Class in mpicbg.imglib.algorithm.integral: n-dimensional integral image that stores sums using type .
IntegralImage(Image<R>, T, Converter<R, T>) - Constructor for class mpicbg.imglib.algorithm.integral.IntegralImage
IntegralImageDouble<R extends NumericType<R>> - Class in mpicbg.imglib.algorithm.integral: Special implementation for double using the basic type to sum up the individual lines.
IntegralImageDouble(Image<R>, Converter<R, DoubleType>) - Constructor for class mpicbg.imglib.algorithm.integral.IntegralImageDouble
IntegralImageLong<R extends NumericType<R>> - Class in mpicbg.imglib.algorithm.integral: Special implementation for long using the basic type to sum up the individual lines.
IntegralImageLong(Image<R>, Converter<R, LongType>) - Constructor for class mpicbg.imglib.algorithm.integral.IntegralImageLong
integralImg - Variable in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
integrateLine(int, LocalizableByDimCursor<T>, T, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
integrateLine(int, LocalizableByDimCursor<DoubleType>, DoubleType, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImageDouble
integrateLine(int, LocalizableByDimCursor<LongType>, LongType, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImageLong
integrateLineDim0(Converter<R, T>, LocalizableByDimCursor<R>, LocalizableByDimCursor<T>, T, T, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
integrateLineDim0(Converter<R, DoubleType>, LocalizableByDimCursor<R>, LocalizableByDimCursor<DoubleType>, DoubleType, DoubleType, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImageDouble
integrateLineDim0(Converter<R, LongType>, LocalizableByDimCursor<R>, LocalizableByDimCursor<LongType>, LongType, LongType, int) - Method in class mpicbg.imglib.algorithm.integral.IntegralImageLong
intensity - Variable in class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
intern(List<T>) - Method in class mpicbg.imglib.labeling.LabelingType: This method returns the canonical object for the given labeling.
intern(T) - Method in class mpicbg.imglib.labeling.LabelingType: Return the canonical labeling object representing the single labeling.
Interpolator<T extends Type<T>> - Interface in mpicbg.imglib.interpolation: TODO
Interpolator1D<T extends Type<T>> - Interface in mpicbg.imglib.interpolation: TODO
Interpolator2D<T extends Type<T>> - Interface in mpicbg.imglib.interpolation: TODO
Interpolator3D<T extends Type<T>> - Interface in mpicbg.imglib.interpolation: TODO
interpolatorFactory - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
InterpolatorFactory<T extends Type<T>> - Class in mpicbg.imglib.interpolation: TODO
InterpolatorFactory(OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.InterpolatorFactory
interpolatorFactory - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl
InterpolatorImpl<T extends Type<T>> - Class in mpicbg.imglib.interpolation: TODO
InterpolatorImpl(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.InterpolatorImpl
intersectConditions() - Method in class imglib.ops.operation.AssignOperation
IntImagePlus<T extends Type<T>> - Class in mpicbg.imglib.container.imageplus: ImagePlusContainer for integer-stored data.
IntImagePlus(ImagePlusContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.imageplus.IntImagePlus: Standard constructor as called by default factories.
IntImagePlus(ImagePlus, ImagePlusContainerFactory) - Constructor for class mpicbg.imglib.container.imageplus.IntImagePlus
IntType - Class in mpicbg.imglib.type.numeric.integer: TODO
IntType(DirectAccessContainer<IntType, ? extends IntAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.IntType
IntType(int) - Constructor for class mpicbg.imglib.type.numeric.integer.IntType
IntType() - Constructor for class mpicbg.imglib.type.numeric.integer.IntType
invalidateLowerEntries(ArrayList<DifferenceOfGaussianPeak<T>>, DifferenceOfGaussianPeak<T>) - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression
InverseFFT<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
InverseFFT(FFT<T>) - Constructor for class script.imglib.algorithm.InverseFFT
InverseFFT(Image<ComplexDoubleType>, FFT<T>) - Constructor for class script.imglib.algorithm.InverseFFT
InverseFourierConvolution<T extends RealType<T>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm.fft: Convolve an image with the inverse of a kernel which is division in the Fourier domain.
InverseFourierConvolution(Image<T>, Image<S>) - Constructor for class mpicbg.imglib.algorithm.fft.InverseFourierConvolution
InverseFourierTransform<T extends RealType<T>,S extends ComplexType<S>> - Class in mpicbg.imglib.algorithm.fft: TODO
InverseFourierTransform(Image<S>, T, FourierTransform.Rearrangement, boolean, boolean, boolean, int[], int[]) - Constructor for class mpicbg.imglib.algorithm.fft.InverseFourierTransform
InverseFourierTransform(Image<S>, FourierTransform<T, ?>) - Constructor for class mpicbg.imglib.algorithm.fft.InverseFourierTransform
InverseFourierTransform(Image<S>, FourierTransform<?, ?>, T) - Constructor for class mpicbg.imglib.algorithm.fft.InverseFourierTransform
InverseFourierTransform(Image<S>, T) - Constructor for class mpicbg.imglib.algorithm.fft.InverseFourierTransform
InverseTransformDescription<T extends Type<T>> - Class in mpicbg.imglib.image.display.imagej: TODO
InverseTransformDescription(InvertibleBoundable, InterpolatorFactory<T>, Image<T>) - Constructor for class mpicbg.imglib.image.display.imagej.InverseTransformDescription
Invert - Class in imglib.ops.operator.unary: TODO
Invert(double, double) - Constructor for class imglib.ops.operator.unary.Invert
invertMatrix(Image<DoubleType>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization: This method is called by the process method to allow to override how the matrix is inverted
isActive() - Method in interface mpicbg.imglib.cursor.Cursor
isActive() - Method in class mpicbg.imglib.cursor.CursorImpl
isActive() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
isActive() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
isActive() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
isActive() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
isActive() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
isActive() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
isAffine - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
isApproxEqual(float, float, float) - Static method in class mpicbg.imglib.util.Util
isApproxEqual(double, double, double) - Static method in class mpicbg.imglib.util.Util
isArrayContainer - Variable in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
isClosed - Variable in class mpicbg.imglib.cursor.CursorImpl
isEdgeMax(int[]) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Determines whether the input coordinates are on the edge of the image or not.
isEdgeMax(int[]) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Determines whether the input coordinates are on the edge of the image or not.
isEmpty() - Method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents.PositionStack
isEmpty() - Method in class mpicbg.imglib.image.Image
isHSB() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns true if this is a 3-slice HSB stack.
isHSB() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns true if this is a 3-slice HSB stack.
isInit() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
isIntegerDivision(Image<?>, Image<?>) - Static method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d: The dimensions of the integral image are always +1 from the integrated image.
isLabeled() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
isLabeled() - Method in class mpicbg.imglib.labeling.LocalizableLabelingPerimeterCursor
isLeaf() - Method in interface mpicbg.imglib.algorithm.kdtree.node.Node
isLeaf() - Method in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
isLeaf() - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
isLeaf() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
isMax() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
isMin() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
isPeakHighEnough(B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: Checks if the absolute value of the current peak is high enough, more efficient versions can override this method
isPeakHighEnough(B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal: Checks if the absolute value of the current peak is high enough, more efficient versions can override this method
isQuantized() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: see enableQuantization
isRGB() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns true if this is a 3-slice RGB stack.
isRGB() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns true if this is a 3-slice RGB stack.
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.And
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.AxisLessThan
isSatisfied(LocalizableCursor<T>, int[]) - Method in interface imglib.ops.condition.Condition
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.Not
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.Or
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.PixelOnBorder
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.ValueGreaterThan
isSatisfied(LocalizableCursor<T>, int[]) - Method in class imglib.ops.condition.ValueLessThan
isSpecialPoint(LocalNeighborhoodCursor, B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian: Checks if the current position is a minima or maxima in a 3^n neighborhood, more efficient versions can override this method
isSpecialPoint(LocalNeighborhoodCursor, B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal: Checks if the current position is a minima or maxima in a 3^n neighborhood, more efficient versions can override this method
isValid() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
isVirtual() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Returns true if this is a virtual (disk resident) stack.
isVirtual() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Returns true if this is a virtual (disk resident) stack.
isWithinImageBounds(int[]) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Given a position array, returns whether or not the position is within the bounds of the image, or out of bounds.
isWithinImageBounds(int[]) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Given a position array, returns whether or not the position is within the bounds of the image, or out of bounds.
Iterable - Interface in mpicbg.imglib.cursor: The Iterable interface provides basic functionality for iterating over an Image.
IterationStatus - Interface in imglib.ops.observer: TODO
IterationStatus.Message - Enum in imglib.ops.observer
iterator() - Method in class mpicbg.imglib.cursor.CursorImpl
iterator() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
iterator() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
iterator() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
iterator() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
iterator() - Method in class mpicbg.imglib.image.Image
iterator() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor

K

KDTree<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree: TODO
KDTree(List<T>) - Constructor for class mpicbg.imglib.algorithm.kdtree.KDTree: Construct a KDTree from the elements in the given list.
KDTree(List<T>, int) - Constructor for class mpicbg.imglib.algorithm.kdtree.KDTree
kdTree - Variable in class mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch
kdTree - Variable in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
kdTree - Variable in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch

L

label - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
labelAllConnectedComponents(Labeling<T>, Image<BitType>, Iterator<T>) - Static method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents: Label all connected components in the given image using an 8-connected structuring element or it's N-dimensional analog (connect if touching along diagonals as well as +/- one element in any direction).
labelAllConnectedComponents(Labeling<T>, Image<BitType>, Iterator<T>, int[][]) - Static method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents: Label all connected components in the given image using an arbitrary structuring element.
labeling - Variable in class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
labeling - Variable in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
Labeling<T extends Comparable<T>> - Class in mpicbg.imglib.labeling: A labeling represents the assignment of zero or more labels to the pixels in a space.
Labeling(Container<LabelingType<T>>, LabelingType<T>, String) - Constructor for class mpicbg.imglib.labeling.Labeling: Create a named labeling from a container and a type
Labeling(ImageFactory<LabelingType<T>>, int[], String) - Constructor for class mpicbg.imglib.labeling.Labeling: Create a named labeling from an image factory
Labeling(Container<LabelingType<T>>, LabelingType<T>) - Constructor for class mpicbg.imglib.labeling.Labeling
LabelingCursorStrategy<T extends Comparable<T>,L extends Labeling<T>> - Interface in mpicbg.imglib.labeling
LabelingCursorStrategyFactory<T extends Comparable<T>,L extends Labeling<T>> - Interface in mpicbg.imglib.labeling: TODO
labelingFactory - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
LabelingType<T extends Comparable<T>> - Class in mpicbg.imglib.labeling: The LabelingType represents a labeling of a pixel with zero or more labelings of type T.
LabelingType(DirectAccessContainer<LabelingType<T>, ? extends IntAccess>) - Constructor for class mpicbg.imglib.labeling.LabelingType: A labeling that supports 2^31 different kinds of label assignments
LabelingType(List<T>) - Constructor for class mpicbg.imglib.labeling.LabelingType
LabelingType() - Constructor for class mpicbg.imglib.labeling.LabelingType
LabelingType(DirectAccessContainer<LabelingType<T>, ? extends IntAccess>, LabelingMapping<T, Integer>, IntAccess, long[]) - Constructor for class mpicbg.imglib.labeling.LabelingType
LanczosInterpolator<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.lanczos: TODO
LanczosInterpolator(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>, int, boolean) - Constructor for class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
LanczosInterpolatorFactory<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.lanczos: TODO
LanczosInterpolatorFactory(OutOfBoundsStrategyFactory<T>, int, boolean) - Constructor for class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory: Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory(OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory: Creates a new LanczosInterpolatorFactory with standard parameters (do clipping, alpha=5)
lastCell - Variable in class mpicbg.imglib.cursor.cell.CellCursor
lastIndex - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
lastSliceIndex - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
Leaf<N extends Leaf<N>> - Interface in mpicbg.imglib.algorithm.kdtree.node: TODO
left - Variable in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
LevenbergMarquardtSolver - Class in mpicbg.imglib.algorithm.peak: A collection of static utils implementing a plain Levenberg-Marquardt least-square curve fitting algorithm.
LevenbergMarquardtSolver() - Constructor for class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
LINEAR - Static variable in class script.imglib.algorithm.fn.AbstractAffine3D
LINEAR - Static variable in class script.imglib.algorithm.Resample
LinearInterpolator<T extends NumericType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator
LinearInterpolator(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>, boolean) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator
LinearInterpolator1D<T extends NumericType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator1D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
LinearInterpolator2D<T extends NumericType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator2D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
LinearInterpolator2DRealType<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator2DRealType(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
LinearInterpolator3D<T extends NumericType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator3D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
LinearInterpolator3DRealType<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolator3DRealType(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
LinearInterpolatorFactory<T extends RealType<T>> - Class in mpicbg.imglib.interpolation.linear: TODO
LinearInterpolatorFactory(OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.linear.LinearInterpolatorFactory
linkedType - Variable in class mpicbg.imglib.container.DirectAccessContainerImpl
Localizable - Interface in mpicbg.imglib.cursor: The Localizable interface add functionality to return the current position.
Localizable3D - Interface in mpicbg.imglib.cursor: TODO
LocalizableByDim - Interface in mpicbg.imglib.cursor: TODO
LocalizableByDim3D - Interface in mpicbg.imglib.cursor: TODO
LocalizableByDimCursor<T extends Type<T>> - Interface in mpicbg.imglib.cursor: TODO
LocalizableByDimCursor3D<T extends Type<T>> - Interface in mpicbg.imglib.cursor: TODO
LocalizableCursor<T extends Type<T>> - Interface in mpicbg.imglib.cursor: TODO
LocalizableCursor3D<T extends Type<T>> - Interface in mpicbg.imglib.cursor: TODO
LocalizableLabelingCursor<T extends Comparable<T>> - Class in mpicbg.imglib.labeling: A cursor that only visits labeled pixels.
LocalizableLabelingCursor(LocalizableCursor<LabelingType<T>>, T) - Constructor for class mpicbg.imglib.labeling.LocalizableLabelingCursor
LocalizableLabelingCursor(RegionOfInterestCursor<LabelingType<T>>, int[], T) - Constructor for class mpicbg.imglib.labeling.LocalizableLabelingCursor
LocalizableLabelingPerimeterCursor<T extends Comparable<T>> - Class in mpicbg.imglib.labeling: TODO
LocalizableLabelingPerimeterCursor(LocalizableCursor<LabelingType<T>>, LocalizableByDimCursor<LabelingType<T>>, T) - Constructor for class mpicbg.imglib.labeling.LocalizableLabelingPerimeterCursor
LocalizableLabelingPerimeterCursor(RegionOfInterestCursor<LabelingType<T>>, int[], LocalizableByDimCursor<LabelingType<T>>, T) - Constructor for class mpicbg.imglib.labeling.LocalizableLabelingPerimeterCursor
LocalizablePlane - Interface in mpicbg.imglib.cursor: TODO
LocalizablePlaneCursor<T extends Type<T>> - Interface in mpicbg.imglib.cursor: TODO
LocalizablePoint - Class in mpicbg.imglib.algorithm.math: TODO
LocalizablePoint(int[]) - Constructor for class mpicbg.imglib.algorithm.math.LocalizablePoint
LocalizablePoint(float[]) - Constructor for class mpicbg.imglib.algorithm.math.LocalizablePoint
LocalizablePoint(int) - Constructor for class mpicbg.imglib.algorithm.math.LocalizablePoint
LocalNeighborhoodCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: TODO
LocalNeighborhoodCursor(LocalizableByDimCursor<T>) - Constructor for class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
LocalNeighborhoodCursor3D<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: TODO
LocalNeighborhoodCursor3D(LocalizableByDimCursor<T>) - Constructor for class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
LocalNeighborhoodCursor3DOptimized<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: TODO
LocalNeighborhoodCursor3DOptimized(LocalizableByDimCursor3D<T>) - Constructor for class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
LocalNeighborhoodCursorFactory - Class in mpicbg.imglib.cursor.special: TODO
LocalNeighborhoodCursorFactory() - Constructor for class mpicbg.imglib.cursor.special.LocalNeighborhoodCursorFactory
loccur - Variable in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
LOCI - Class in mpicbg.imglib.io: TODO
LOCI() - Constructor for class mpicbg.imglib.io.LOCI
Log - Class in imglib.ops.operator.unary: TODO
Log() - Constructor for class imglib.ops.operator.unary.Log
Log - Class in script.imglib.math: TODO
Log(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Log
Log(IFunction) - Constructor for class script.imglib.math.Log
Log(Number) - Constructor for class script.imglib.math.Log
Log10 - Class in script.imglib.math: TODO
Log10(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Log10
Log10(IFunction) - Constructor for class script.imglib.math.Log10
Log10(Number) - Constructor for class script.imglib.math.Log10
Log1p - Class in script.imglib.math: TODO
Log1p(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Log1p
Log1p(IFunction) - Constructor for class script.imglib.math.Log1p
Log1p(Number) - Constructor for class script.imglib.math.Log1p
log2(double) - Static method in class mpicbg.imglib.util.Util
LongAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
LongArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
LongArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.LongArray
LongArray(long[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.LongArray
LongDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
LongDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.LongDynamicContainer
LongDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
LongDynamicContainerAccessor(LongDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.LongDynamicContainerAccessor
longHoughLine(Image<T>) - Static method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Creates a default HoughLineTransform with LongType vote space.
LongType - Class in mpicbg.imglib.type.numeric.integer: TODO
LongType(DirectAccessContainer<LongType, ? extends LongAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.LongType
LongType(long) - Constructor for class mpicbg.imglib.type.numeric.integer.LongType
LongType() - Constructor for class mpicbg.imglib.type.numeric.integer.LongType
lookUp(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCache
lookUp(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListCacheFIFO
loopSize - Variable in class mpicbg.imglib.multithreading.Chunk
Luminance - Class in script.imglib.color: TODO
Luminance(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Luminance

M

main(String[]) - Static method in class mpicbg.imglib.algorithm.kdtree.TestKDTree
main(String[]) - Static method in class mpicbg.imglib.wrapper.ImgLib1
main(String[]) - Static method in class mpicbg.imglib.wrapper.ImgLib2
makeArray(Object) - Static method in class mpicbg.imglib.io.ImageOpener: Wraps raw primitive array in imglib Array object.
makeNode(List<T>, int) - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
makeType(int) - Static method in class mpicbg.imglib.io.ImageOpener: Converts Bio-Formats pixel type to imglib Type object.
mapping - Variable in class mpicbg.imglib.labeling.LabelingType
MathLib - Class in mpicbg.imglib.algorithm.math: TODO
MathLib() - Constructor for class mpicbg.imglib.algorithm.math.MathLib
Max - Class in imglib.ops.operator.binary: TODO
Max() - Constructor for class imglib.ops.operator.binary.Max
Max - Class in imglib.ops.operator.unary: TODO
Max(double) - Constructor for class imglib.ops.operator.unary.Max
max(Image<C>) - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
max - Variable in class mpicbg.imglib.image.display.Display
max(int) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
max - Variable in class mpicbg.imglib.labeling.BoundingBox
max(T, T) - Static method in class mpicbg.imglib.util.Util
Max - Class in script.imglib.math: TODO
Max(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Max
Max(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Max
Max(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Max
Max(IFunction, IFunction) - Constructor for class script.imglib.math.Max
Max(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Max
Max(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Max
Max(IFunction, Number) - Constructor for class script.imglib.math.Max
Max(Number, IFunction) - Constructor for class script.imglib.math.Max
Max(Number, Number) - Constructor for class script.imglib.math.Max
Max(Object...) - Constructor for class script.imglib.math.Max
maxCellsPlane - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
maxDim - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
maxI - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
maxI - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
maxIdx - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
maxima - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
maxIndex - Variable in class mpicbg.imglib.cursor.array.ArrayCursor
maxIndex - Variable in class mpicbg.imglib.cursor.imageplus.ImagePlusCursor2D
maxIndex - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor2D
MaxProjection<T extends Comparable<T> & Type<T>> - Class in mpicbg.imglib.algorithm.projection: Computes a maximum projection along an arbitrary dimension, if the image in 1-dimensional it will return an Image of size 1 with the max value
MaxProjection(Image<T>, int) - Constructor for class mpicbg.imglib.algorithm.projection.MaxProjection
median(List<T>, int) - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
MedianFilter<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: Median filter / morphological operation.
MedianFilter(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.MedianFilter
MedianFilter(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.MedianFilter
MedianFilter<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
MedianFilter(Image<T>, float) - Constructor for class script.imglib.algorithm.MedianFilter: A median filter with an OutOfBoundsStrategyMirrorFactory.
MedianFilter(Image<T>, float, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.MedianFilter
MedianFilter(IFunction, float) - Constructor for class script.imglib.algorithm.MedianFilter: A median filter with an OutOfBoundsStrategyMirrorFactory.
MedianFilter(IFunction, float, OutOfBoundsStrategyFactory<T>) - Constructor for class script.imglib.algorithm.MedianFilter
medianLength - Variable in class mpicbg.imglib.algorithm.kdtree.KDTree
Min - Class in imglib.ops.operator.binary: TODO
Min() - Constructor for class imglib.ops.operator.binary.Min
Min - Class in imglib.ops.operator.unary: TODO
Min(double) - Constructor for class imglib.ops.operator.unary.Min
min - Variable in class mpicbg.imglib.image.display.Display
min(int) - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
min - Variable in class mpicbg.imglib.labeling.BoundingBox
min(T, T) - Static method in class mpicbg.imglib.util.Util
Min - Class in script.imglib.math: TODO
Min(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Min
Min(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Min
Min(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Min
Min(IFunction, IFunction) - Constructor for class script.imglib.math.Min
Min(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Min
Min(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Min
Min(IFunction, Number) - Constructor for class script.imglib.math.Min
Min(Number, IFunction) - Constructor for class script.imglib.math.Min
Min(Number, Number) - Constructor for class script.imglib.math.Min
Min(Object...) - Constructor for class script.imglib.math.Min
minBackgroundPeakHeight - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
minForegroundPeakHeight - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
mirror - Variable in class mpicbg.imglib.container.planar.PlanarContainer
MirrorImage<T extends Type<T>> - Class in mpicbg.imglib.algorithm.mirror: Mirrors an n-dimensional image along an axis (one of the dimensions).
MirrorImage(Image<T>, int) - Constructor for class mpicbg.imglib.algorithm.mirror.MirrorImage
Morph<T extends RealType<T>> - Class in script.imglib.algorithm.fn: Morphological operations such as Open, Close, Erode and Dilate.
Morph(Object, Class<?>, Morph.Shape, int, int, float) - Constructor for class script.imglib.algorithm.fn.Morph
Morph.Shape - Enum in script.imglib.algorithm.fn
MorphClose<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: Close morphological operation.
MorphClose(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.MorphClose
MorphClose(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.MorphClose
MorphDilate<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: Dilation morphological operation.
MorphDilate(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.MorphDilate
MorphDilate(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.MorphDilate
MorphErode<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: Erosion morphological operation.
MorphErode(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.MorphErode
MorphErode(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.MorphErode
MorphOpen<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: Open morphological operation.
MorphOpen(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.MorphOpen
MorphOpen(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.MorphOpen
move(int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
move(int, int) - Method in class mpicbg.imglib.cursor.link.NullLink
move(int, int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
move(int, int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
move(int, int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
move(int, int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
moveCenterTo(Localizable) - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Move the center of the sphere to the location specified by the Localizable object.
moveCenterToCoordinates(float[]) - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Move the center of the sphere to the location specified by the array, in physical coordinates.
moveCenterToPosition(int[]) - Method in class mpicbg.imglib.cursor.special.CoordsCursor: Move the center of the sphere to the pixel location specified by the array, in pixel coordinates.
moveRel(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
moveRel(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
moveRel(int[]) - Method in class mpicbg.imglib.cursor.link.NullLink
moveRel(int[]) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
moveRel(int, int, int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
moveRel(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
moveRel(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
moveRel(float[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Moves the interpolator a certain distance given by the vector to a random position inside or out of image bounds.
moveRel(double[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Moves the interpolator a certain distance given by the vector to a random position inside or out of image bounds.
moveRel(float) - Method in interface mpicbg.imglib.interpolation.Interpolator1D: Moves the interpolator a certain distance given by the vector to a random position inside or out of image bounds.
moveRel(float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator2D: Moves the interpolator a certain distance given by the vector to a random position inside or out of image bounds.
moveRel(float, float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Moves the interpolator a certain distance given by the vector to a random position inside or out of image bounds.
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.InterpolatorImpl
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.InterpolatorImpl
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
moveRel(float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveRel(float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveRel(float, float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveRel(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveRel(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveTo(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
moveTo(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
moveTo(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
moveTo(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
moveTo(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
moveTo(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
moveTo(int[]) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.link.NullLink
moveTo(int[]) - Method in class mpicbg.imglib.cursor.link.NullLink
moveTo(Localizable) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
moveTo(int[]) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
moveTo(int, int, int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
moveTo(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
moveTo(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
moveTo(Localizable) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
moveTo(float[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Moves the interpolator to a random position inside or out of image bounds.
moveTo(double[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Moves the interpolator to a random position inside or out of image bounds.
moveTo(float) - Method in interface mpicbg.imglib.interpolation.Interpolator1D: Moves the interpolator to a random position inside or out of image bounds.
moveTo(float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator2D: Moves the interpolator to a random position inside or out of image bounds.
moveTo(float, float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Moves the interpolator to a random position inside or out of image bounds.
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
moveTo(float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
moveTo(float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
moveTo(float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
moveTo(float, float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
moveTo(float, float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
moveTo(float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
moveTo(float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
moveTo(float, float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveTo(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveTo(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
moveX(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
moveX(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
moveX(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
moveY(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
moveY(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
moveY(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
moveZ(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
moveZ(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
moveZ(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
mpicbg.imglib - package mpicbg.imglib
mpicbg.imglib.algorithm - package mpicbg.imglib.algorithm
mpicbg.imglib.algorithm.correlation - package mpicbg.imglib.algorithm.correlation
mpicbg.imglib.algorithm.extremafinder - package mpicbg.imglib.algorithm.extremafinder
mpicbg.imglib.algorithm.fft - package mpicbg.imglib.algorithm.fft
mpicbg.imglib.algorithm.floydsteinberg - package mpicbg.imglib.algorithm.floydsteinberg
mpicbg.imglib.algorithm.function - package mpicbg.imglib.algorithm.function
mpicbg.imglib.algorithm.gauss - package mpicbg.imglib.algorithm.gauss
mpicbg.imglib.algorithm.histogram - package mpicbg.imglib.algorithm.histogram
mpicbg.imglib.algorithm.histogram.arbitrary - package mpicbg.imglib.algorithm.histogram.arbitrary
mpicbg.imglib.algorithm.histogram.discrete - package mpicbg.imglib.algorithm.histogram.discrete
mpicbg.imglib.algorithm.integral - package mpicbg.imglib.algorithm.integral
mpicbg.imglib.algorithm.kdtree - package mpicbg.imglib.algorithm.kdtree
mpicbg.imglib.algorithm.kdtree.node - package mpicbg.imglib.algorithm.kdtree.node
mpicbg.imglib.algorithm.labeling - package mpicbg.imglib.algorithm.labeling
mpicbg.imglib.algorithm.math - package mpicbg.imglib.algorithm.math
mpicbg.imglib.algorithm.mirror - package mpicbg.imglib.algorithm.mirror
mpicbg.imglib.algorithm.pde - package mpicbg.imglib.algorithm.pde
mpicbg.imglib.algorithm.peak - package mpicbg.imglib.algorithm.peak
mpicbg.imglib.algorithm.projection - package mpicbg.imglib.algorithm.projection
mpicbg.imglib.algorithm.roi - package mpicbg.imglib.algorithm.roi
mpicbg.imglib.algorithm.scalespace - package mpicbg.imglib.algorithm.scalespace
mpicbg.imglib.algorithm.transformation - package mpicbg.imglib.algorithm.transformation
mpicbg.imglib.container - package mpicbg.imglib.container
mpicbg.imglib.container.array - package mpicbg.imglib.container.array
mpicbg.imglib.container.basictypecontainer - package mpicbg.imglib.container.basictypecontainer
mpicbg.imglib.container.basictypecontainer.array - package mpicbg.imglib.container.basictypecontainer.array
mpicbg.imglib.container.cell - package mpicbg.imglib.container.cell
mpicbg.imglib.container.constant - package mpicbg.imglib.container.constant
mpicbg.imglib.container.dynamic - package mpicbg.imglib.container.dynamic
mpicbg.imglib.container.imageplus - package mpicbg.imglib.container.imageplus
mpicbg.imglib.container.planar - package mpicbg.imglib.container.planar
mpicbg.imglib.container.shapelist - package mpicbg.imglib.container.shapelist
mpicbg.imglib.cursor - package mpicbg.imglib.cursor
mpicbg.imglib.cursor.array - package mpicbg.imglib.cursor.array
mpicbg.imglib.cursor.cell - package mpicbg.imglib.cursor.cell
mpicbg.imglib.cursor.constant - package mpicbg.imglib.cursor.constant
mpicbg.imglib.cursor.dynamic - package mpicbg.imglib.cursor.dynamic
mpicbg.imglib.cursor.imageplus - package mpicbg.imglib.cursor.imageplus
mpicbg.imglib.cursor.link - package mpicbg.imglib.cursor.link
mpicbg.imglib.cursor.planar - package mpicbg.imglib.cursor.planar
mpicbg.imglib.cursor.shapelist - package mpicbg.imglib.cursor.shapelist
mpicbg.imglib.cursor.special - package mpicbg.imglib.cursor.special
mpicbg.imglib.cursor.vector - package mpicbg.imglib.cursor.vector
mpicbg.imglib.exception - package mpicbg.imglib.exception
mpicbg.imglib.function - package mpicbg.imglib.function
mpicbg.imglib.image - package mpicbg.imglib.image
mpicbg.imglib.image.display - package mpicbg.imglib.image.display
mpicbg.imglib.image.display.imagej - package mpicbg.imglib.image.display.imagej
mpicbg.imglib.interpolation - package mpicbg.imglib.interpolation
mpicbg.imglib.interpolation.dct - package mpicbg.imglib.interpolation.dct
mpicbg.imglib.interpolation.lanczos - package mpicbg.imglib.interpolation.lanczos
mpicbg.imglib.interpolation.linear - package mpicbg.imglib.interpolation.linear
mpicbg.imglib.interpolation.nearestneighbor - package mpicbg.imglib.interpolation.nearestneighbor
mpicbg.imglib.io - package mpicbg.imglib.io
mpicbg.imglib.labeling - package mpicbg.imglib.labeling
mpicbg.imglib.multithreading - package mpicbg.imglib.multithreading
mpicbg.imglib.outofbounds - package mpicbg.imglib.outofbounds
mpicbg.imglib.type - package mpicbg.imglib.type
mpicbg.imglib.type.label - package mpicbg.imglib.type.label
mpicbg.imglib.type.logic - package mpicbg.imglib.type.logic
mpicbg.imglib.type.numeric - package mpicbg.imglib.type.numeric
mpicbg.imglib.type.numeric.complex - package mpicbg.imglib.type.numeric.complex
mpicbg.imglib.type.numeric.integer - package mpicbg.imglib.type.numeric.integer
mpicbg.imglib.type.numeric.real - package mpicbg.imglib.type.numeric.real
mpicbg.imglib.util - package mpicbg.imglib.util
mpicbg.imglib.wrapper - package mpicbg.imglib.wrapper
mul(BitType) - Method in class mpicbg.imglib.type.logic.BitType
mul(float) - Method in class mpicbg.imglib.type.logic.BitType
mul(double) - Method in class mpicbg.imglib.type.logic.BitType
mul(ComplexFloatType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
mul(float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
mul(double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
mul(T) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
mul(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
mul(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
mul(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.LongType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.LongType
mul(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
mul(float) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
mul(double) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
mul(T) - Method in interface mpicbg.imglib.type.numeric.NumericType
mul(float) - Method in interface mpicbg.imglib.type.numeric.NumericType
mul(double) - Method in interface mpicbg.imglib.type.numeric.NumericType
mul(float) - Method in class mpicbg.imglib.type.numeric.real.FloatType
mul(double) - Method in class mpicbg.imglib.type.numeric.real.FloatType
mul(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
mul(float) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
mul(double) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
mul(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
mul(float) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
mul(double) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
mul(RGBALegacyType) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
MultiImageIterator<T extends RealType<T>> - Class in imglib.ops.operation
MultiImageIterator(Image<T>[]) - Constructor for class imglib.ops.operation.MultiImageIterator
Multiply - Class in imglib.ops.operator.binary: TODO
Multiply() - Constructor for class imglib.ops.operator.binary.Multiply
multiply(Image<ComplexFloatType>, Image<ComplexFloatType>) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution: Multiply in Fourier Space
multiply(Image<ComplexFloatType>, Image<ComplexFloatType>) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierConvolution: Divide in Fourier Space
Multiply - Class in script.imglib.math: TODO
Multiply(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Multiply
Multiply(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Multiply
Multiply(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Multiply
Multiply(IFunction, IFunction) - Constructor for class script.imglib.math.Multiply
Multiply(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Multiply
Multiply(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Multiply
Multiply(IFunction, Number) - Constructor for class script.imglib.math.Multiply
Multiply(Number, IFunction) - Constructor for class script.imglib.math.Multiply
Multiply(Number, Number) - Constructor for class script.imglib.math.Multiply
Multiply(Object...) - Constructor for class script.imglib.math.Multiply
MultiplyByConstant - Class in imglib.ops.operator.unary: TODO
MultiplyByConstant(double) - Constructor for class imglib.ops.operator.unary.MultiplyByConstant
multiplyInPlace(Image<ComplexFloatType>, Image<ComplexFloatType>) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
MultiThreaded - Interface in mpicbg.imglib.algorithm: TODO
MultiThreadedAlgorithm - Class in mpicbg.imglib.algorithm: This is a convenience implementation of an algorithm that implements MultiThreaded and Algorithm so that less code has to be re-implemented.
MultiThreadedAlgorithm() - Constructor for class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
MultiThreadedBenchmarkAlgorithm - Class in mpicbg.imglib.algorithm: This is a convenience implementation of an algorithm that implements MultiThreaded, Benchmark and Algorithm so that less code has to be re-implemented.
MultiThreadedBenchmarkAlgorithm() - Constructor for class mpicbg.imglib.algorithm.MultiThreadedBenchmarkAlgorithm

N

n - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
name - Variable in class mpicbg.imglib.image.Image
names - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
NEAREST_NEIGHBOR - Static variable in class script.imglib.algorithm.fn.AbstractAffine3D
NEAREST_NEIGHBOR - Static variable in class script.imglib.algorithm.Resample
NearestNeighborInterpolator<T extends Type<T>> - Class in mpicbg.imglib.interpolation.nearestneighbor: TODO
NearestNeighborInterpolator(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
NearestNeighborInterpolator1D<T extends Type<T>> - Class in mpicbg.imglib.interpolation.nearestneighbor: TODO
NearestNeighborInterpolator1D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
NearestNeighborInterpolator2D<T extends Type<T>> - Class in mpicbg.imglib.interpolation.nearestneighbor: TODO
NearestNeighborInterpolator2D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
NearestNeighborInterpolator3D<T extends Type<T>> - Class in mpicbg.imglib.interpolation.nearestneighbor: TODO
NearestNeighborInterpolator3D(Image<T>, InterpolatorFactory<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
NearestNeighborInterpolatorFactory<T extends Type<T>> - Class in mpicbg.imglib.interpolation.nearestneighbor: TODO
NearestNeighborInterpolatorFactory(OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolatorFactory
NearestNeighborSearch<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree: TODO
NearestNeighborSearch(KDTree<T>) - Constructor for class mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch
newThreads() - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
newThreads(int) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
next() - Method in class mpicbg.imglib.cursor.CursorImpl
next() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
next() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
next() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
next() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
NIOByteArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIOByteArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
NIOByteArray(byte[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
NIOCharArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIOCharArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
NIOCharArray(char[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
NIODoubleArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIODoubleArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
NIODoubleArray(double[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
NIOFloatArray - Class in mpicbg.imglib.container.basictypecontainer.array: Core array type used for float[] data
NIOFloatArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
NIOFloatArray(float[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
NIOIntArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIOIntArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
NIOIntArray(int[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
NIOLongArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIOLongArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
NIOLongArray(long[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
NIOShortArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
NIOShortArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
NIOShortArray(short[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
NNearestNeighborSearch<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree: TODO
NNearestNeighborSearch(KDTree<T>) - Constructor for class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
Node<N extends Node<N>> - Interface in mpicbg.imglib.algorithm.kdtree.node: TODO
NonLeaf<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree.node: TODO
NonLeaf(float, int, Node<T>, Node<T>) - Constructor for class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
Normalize<N extends NumericType<N>> - Class in script.imglib.algorithm: Becomes a normalized version of the given image, within min and max bounds, where all pixels take values between 0 and 1.
Normalize(Object) - Constructor for class script.imglib.algorithm.Normalize
normalizeAndConjugate(Image<ComplexFloatType>, Image<ComplexFloatType>) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
NormalizeImageFloat<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.math: Normalizes a given Image so that the sum of all of its pixels is equal to one (or approximately so).
NormalizeImageFloat(Image<T>) - Constructor for class mpicbg.imglib.algorithm.math.NormalizeImageFloat
NormalizeImageMinMax<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.math: TODO
NormalizeImageMinMax(Image<T>) - Constructor for class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
NormalizeSum<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
NormalizeSum(Image<T>) - Constructor for class script.imglib.algorithm.NormalizeSum
NormalizeSum(IFunction) - Constructor for class script.imglib.algorithm.NormalizeSum
normDouble(double) - Method in class mpicbg.imglib.image.display.Display
normFloat(float) - Method in class mpicbg.imglib.image.display.Display
normImageMinMax(Image) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
NormMinMax<A extends RealType<A>> - Class in mpicbg.imglib.algorithm.function: TODO
NormMinMax(double, double) - Constructor for class mpicbg.imglib.algorithm.function.NormMinMax
Not<T extends RealType<T>> - Class in imglib.ops.condition: TODO
Not(Condition<T>) - Constructor for class imglib.ops.condition.Not
not() - Method in interface mpicbg.imglib.type.BooleanType
not() - Method in class mpicbg.imglib.type.logic.BitType
notifyListeners(StatusEvent) - Method in class mpicbg.imglib.io.ImageOpener: Notifies registered listeners of progress.
notifyOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Fired by the parent cursor in case that it moves while being out of image bounds
notifyOutOfBOunds(int, int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Fired by the parent cursor in case that it moves while being out of image bounds
notifyOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
notifyOutOfBOunds(int, int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
notifyOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
notifyOutOfBOunds(int, int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
notifyOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
notifyOutOfBOunds(int, int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
notifyOutOfBOunds() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue: Has nothing to do when the parent cursor moves while being out of image bounds
notifyOutOfBOunds(int, int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue: Has nothing to do when the parent cursor moves while being out of image bounds
notifyOutOfBOundsBck(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Fired by the parent cursor in case that it moves while being out of image bounds
notifyOutOfBOundsBck(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
notifyOutOfBOundsBck(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
notifyOutOfBOundsBck(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
notifyOutOfBOundsBck(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue
notifyOutOfBOundsFwd(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategy: Fired by the parent cursor in case that it moves while being out of image bounds
notifyOutOfBOundsFwd(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
notifyOutOfBOundsFwd(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
notifyOutOfBOundsFwd(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
notifyOutOfBOundsFwd(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue
NullFunction<T extends RealType<T>> - Class in imglib.ops.function.pn: NullFunction is a function that does not change the output.
NullFunction() - Constructor for class imglib.ops.function.pn.NullFunction
NullLink - Class in mpicbg.imglib.cursor.link: TODO
NullLink() - Constructor for class mpicbg.imglib.cursor.link.NullLink
NumberFunction - Class in script.imglib.math.fn: TODO
NumberFunction(Number) - Constructor for class script.imglib.math.fn.NumberFunction
NumberFunction(double) - Constructor for class script.imglib.math.fn.NumberFunction
numCells - Variable in class mpicbg.imglib.container.cell.CellContainer
numCells - Variable in class mpicbg.imglib.cursor.cell.CellCursor
numCells - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
numCellsDim - Variable in class mpicbg.imglib.container.cell.CellContainer
numCellsDim - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
numCellsDim - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
numDimensions - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
numDimensions - Variable in class mpicbg.imglib.container.cell.Cell
numDimensions - Variable in class mpicbg.imglib.container.ContainerImpl
numDimensions - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
numDimensions - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
numDimensions - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
numDimensions - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
numDimensions - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
numDimensions - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
numDimensions - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
numDimensions - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl: the number of dimensions
numEntities - Variable in class mpicbg.imglib.container.cell.Cell
numEntities - Variable in class mpicbg.imglib.container.dynamic.DynamicContainer
numEntities - Variable in class mpicbg.imglib.container.PixelGridContainerImpl
NumericType<T extends NumericType<T>> - Interface in mpicbg.imglib.type.numeric: TODO
numPixels - Variable in class mpicbg.imglib.container.cell.Cell
numPixels - Variable in class mpicbg.imglib.container.ContainerImpl
numPixels - Variable in class mpicbg.imglib.container.dynamic.DynamicContainer
numQuanta - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
numThreads - Variable in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm

O

offset - Variable in class mpicbg.imglib.container.cell.Cell
open(String) - Static method in class mpicbg.imglib.io.LOCI
Open<T extends RealType<T>> - Class in script.imglib.algorithm: TODO
Open(Object) - Constructor for class script.imglib.algorithm.Open
Open(Object, Morph.Shape, Number, Number, Number) - Constructor for class script.imglib.algorithm.Open
open(String) - Static method in class script.imglib.ImgLib: Open an image from a file path or a web URL.
openImage(String) - Method in class mpicbg.imglib.io.ImageOpener: Reads in an imglib Image from the given source (e.g., file on disk).
openImage(String, ContainerFactory) - Method in class mpicbg.imglib.io.ImageOpener: Reads in an imglib Image from the given source (e.g., file on disk), using the given ContainerFactory to construct the Image.
openImage(String, ImageFactory<T>) - Method in class mpicbg.imglib.io.ImageOpener: Reads in an imglib Image from the given source (e.g., file on disk), using the given ImageFactory to construct the Image.
openImage(IFormatReader, ImageFactory<T>) - Method in class mpicbg.imglib.io.ImageOpener: Reads in an imglib Image from the given initialized IFormatReader, using the given ImageFactory.
openLOCI(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCI(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCI(String, String, ContainerFactory, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIByteType(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIByteType(String, ImageFactory<ByteType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIByteType(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIByteType(String, String, ImageFactory<ByteType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIByteType(String, String, ImageFactory<ByteType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, ImageFactory<FloatType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, String, ImageFactory<FloatType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, String, ContainerFactory, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIFloatType(String, String, ImageFactory<FloatType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIRGBALegacyType(String, String, ImageFactory<RGBALegacyType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIRGBALegacyType(String, String, ImageFactory<RGBALegacyType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, ImageFactory<ShortType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, String, ImageFactory<ShortType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, String, ContainerFactory, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIShortType(String, String, ImageFactory<ShortType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, ImageFactory<Unsigned12BitType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, String, ImageFactory<Unsigned12BitType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, String, ContainerFactory, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsigned12BitType(String, String, ImageFactory<Unsigned12BitType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsignedByteType(String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsignedByteType(String, ImageFactory<UnsignedByteType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsignedByteType(String, String, ContainerFactory) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsignedByteType(String, String, ImageFactory<UnsignedByteType>) - Static method in class mpicbg.imglib.io.LOCI
openLOCIUnsignedByteType(String, String, ImageFactory<UnsignedByteType>, int, int) - Static method in class mpicbg.imglib.io.LOCI
Or<T extends RealType<T>> - Class in imglib.ops.condition: TODO
Or(Condition<T>, Condition<T>) - Constructor for class imglib.ops.condition.Or
Or - Class in imglib.ops.operator.binary: TODO
Or() - Constructor for class imglib.ops.operator.binary.Or
or(T) - Method in interface mpicbg.imglib.type.BooleanType
or(BitType) - Method in class mpicbg.imglib.type.logic.BitType
Or - Class in script.imglib.math: TODO
Or(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Or
Or(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Or
Or(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Or
Or(IFunction, IFunction) - Constructor for class script.imglib.math.Or
Or(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Or
Or(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Or
Or(IFunction, Number) - Constructor for class script.imglib.math.Or
Or(Number, IFunction) - Constructor for class script.imglib.math.Or
Or(Number, Number) - Constructor for class script.imglib.math.Or
Or(Object...) - Constructor for class script.imglib.math.Or
OrConstant - Class in imglib.ops.operator.unary: TODO
OrConstant(long) - Constructor for class imglib.ops.operator.unary.OrConstant
origin - Variable in class mpicbg.imglib.cursor.special.CoordsCursor: Contain the origin of volume iterated by this cursor, (whatever this means for the concrete implementation).
outOfBoundsFactory - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
outOfBoundsFactory - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
OutOfBoundsStrategy<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategy(Cursor<T>) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategy
outOfBoundsStrategyFactory - Variable in class mpicbg.imglib.interpolation.InterpolatorFactory
outOfBoundsStrategyFactory - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl
OutOfBoundsStrategyFactory<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyFactory() - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory
OutOfBoundsStrategyMirror<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyMirror(LocalizableCursor<T>) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror
OutOfBoundsStrategyMirrorExpWindowing<T extends RealType<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyMirrorExpWindowing(LocalizableCursor<T>, int[], float) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing
OutOfBoundsStrategyMirrorExpWindowingFactory<T extends RealType<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyMirrorExpWindowingFactory() - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
OutOfBoundsStrategyMirrorExpWindowingFactory(float) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
OutOfBoundsStrategyMirrorExpWindowingFactory(int) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
OutOfBoundsStrategyMirrorExpWindowingFactory(int[]) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
OutOfBoundsStrategyMirrorFactory<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyMirrorFactory() - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorFactory
OutOfBoundsStrategyPeriodic<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyPeriodic(LocalizableCursor<T>) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic
OutOfBoundsStrategyPeriodicFactory<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyPeriodicFactory() - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodicFactory
OutOfBoundsStrategyValue<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyValue(Cursor<T>, T) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue
OutOfBoundsStrategyValueFactory<T extends Type<T>> - Class in mpicbg.imglib.outofbounds: TODO
OutOfBoundsStrategyValueFactory() - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory
OutOfBoundsStrategyValueFactory(T) - Constructor for class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory
output - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
OutputAlgorithm<T extends Type<T>> - Interface in mpicbg.imglib.algorithm: TODO

P

patchOperation(int[], RegionOfInterestCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.DirectConvolution
patchOperation(int[], RegionOfInterestCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
patchOperation(int[], RegionOfInterestCursor<T>) - Method in class mpicbg.imglib.algorithm.ROIAlgorithm: Performs this algorithm's operation on the patch represented by a RegionOfInterestCursor
peaks - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
PhaseCorrelation<T extends RealType<T>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm.fft: TODO
PhaseCorrelation(Image<T>, Image<S>, int, boolean) - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelation
PhaseCorrelation(Image<T>, Image<S>) - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelation
PhaseCorrelationPeak - Class in mpicbg.imglib.algorithm.fft: TODO
PhaseCorrelationPeak(int[], float, float) - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
PhaseCorrelationPeak(int[], float) - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
PhaseCorrelationPeak(int[]) - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
PhaseCorrelationPeak() - Constructor for class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
PickImagePeaks<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.math: This class implements a very simple peak-picker, with optional ellipsoidal peak suppression.
PickImagePeaks(Image<T>) - Constructor for class mpicbg.imglib.algorithm.math.PickImagePeaks
pickPeaks() - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform: Pick vote space peaks with a PickImagePeaks.
PickPeaks<T extends RealType<T>> - Class in script.imglib.analysis: TODO
PickPeaks(Object) - Constructor for class script.imglib.analysis.PickPeaks
PickPeaks(Object, double[]) - Constructor for class script.imglib.analysis.PickPeaks
piSquare - Static variable in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
PixelGridContainer<T extends Type<T>> - Interface in mpicbg.imglib.container: TODO
PixelGridContainerFactory - Class in mpicbg.imglib.container: TODO
PixelGridContainerFactory() - Constructor for class mpicbg.imglib.container.PixelGridContainerFactory
PixelGridContainerImpl<T extends Type<T>> - Class in mpicbg.imglib.container: TODO
PixelGridContainerImpl(ContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.PixelGridContainerImpl
PixelIntensity(int[], int[], double, long, List<T>) - Constructor for class mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity
pixelLocation - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
PixelOnBorder<T extends RealType<T>> - Class in imglib.ops.condition: TODO
PixelOnBorder(Image<T>, double) - Constructor for class imglib.ops.condition.PixelOnBorder
placeVote(int[], S) - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform: Place a vote with a specific value.
placeVote(int[]) - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform: Place a vote of value 1.
PlanarAccess<A> - Interface in mpicbg.imglib.container.basictypecontainer: Interface allowing access to data on a plane-by-plane basis.
PlanarContainer<T extends Type<T>,A extends ArrayDataAccess<A>> - Class in mpicbg.imglib.container.planar: A Container that stores data in an array of 2d-slices each as a linear array of basic types.
PlanarContainer(int[], int) - Constructor for class mpicbg.imglib.container.planar.PlanarContainer
PlanarContainer(PlanarContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.planar.PlanarContainer
PlanarContainerFactory - Class in mpicbg.imglib.container.planar: Factory that creates an appropriate PlanarContainer.
PlanarContainerFactory() - Constructor for class mpicbg.imglib.container.planar.PlanarContainerFactory
PlanarCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar: Basic Iterator for PlanarContainers
PlanarCursor(PlanarContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.planar.PlanarCursor
PlanarCursor2D<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar: Basic Iterator for 2d PlanarContainers
PlanarCursor2D(PlanarContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.planar.PlanarCursor2D
PlanarLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar: Positionable for a PlanarContainers
PlanarLocalizableByDimCursor(PlanarContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
PlanarLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar: Positionable with OutOfBoundsStrategy for a PlanarContainers
PlanarLocalizableByDimOutOfBoundsCursor(PlanarContainer<T, ?>, Image<T>, T, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
PlanarLocalizableCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar: Localizing Iterator for a PlanarContainers
PlanarLocalizableCursor(PlanarContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
PlanarLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.planar
PlanarLocalizablePlaneCursor(PlanarContainer<T, ?>, Image<T>, T) - Constructor for class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
planeDimA - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
planeDimA - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
planeDimA - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
planeDimA - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
planeDimA - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
planeDimB - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
planeDimB - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
planeDimB - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
planeDimB - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
planeDimB - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
planeSizeA - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
planeSizeA - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
planeSizeA - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
planeSizeB - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
planeSizeB - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
planeSizeB - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
pointsWithinRadius - Variable in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
pop(int[]) - Method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents.PositionStack
position - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
position - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
position - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
position - Variable in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
position - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
position - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
position - Variable in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
position - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
position - Variable in class mpicbg.imglib.cursor.special.CoordsCursor: Contain the relative position of the cursor, with respect to the CoordsCursor.origin, in pixel coordinates.
position - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl
positionOffset(int[], int[]) - Method in class mpicbg.imglib.algorithm.ROIAlgorithm: Offsets the given position to reflect the origin of the patch being in its center, rather than at the top-left corner as is usually the case.
PositionStack(int) - Constructor for class mpicbg.imglib.algorithm.labeling.AllConnectedComponents.PositionStack
positionToIndex(int[], int[]) - Static method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
pow(int, int) - Static method in class mpicbg.imglib.util.Util
Pow - Class in script.imglib.math: TODO
Pow(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Pow
Pow(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Pow
Pow(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Pow
Pow(IFunction, IFunction) - Constructor for class script.imglib.math.Pow
Pow(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Pow
Pow(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Pow
Pow(IFunction, Number) - Constructor for class script.imglib.math.Pow
Pow(Number, IFunction) - Constructor for class script.imglib.math.Pow
Pow(Number, Number) - Constructor for class script.imglib.math.Pow
Precision - Class in mpicbg.imglib.algorithm: TODO
Precision() - Constructor for class mpicbg.imglib.algorithm.Precision
Precision.PrecisionInteger - Enum in mpicbg.imglib.algorithm
Precision.PrecisionReal - Enum in mpicbg.imglib.algorithm
PredefinedCellContainerFactory - Class in mpicbg.imglib.wrapper: TODO
PredefinedCellContainerFactory(int, ArrayDataAccess<?>) - Constructor for class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
PredefinedCellContainerFactory(int[], ArrayDataAccess<?>) - Constructor for class mpicbg.imglib.wrapper.PredefinedCellContainerFactory
printCoordinates(float[]) - Static method in class mpicbg.imglib.util.Util
printCoordinates(int[]) - Static method in class mpicbg.imglib.util.Util
printCoordinates(boolean[]) - Static method in class mpicbg.imglib.util.Util
printProperties() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory
printProperties() - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
printProperties() - Method in class mpicbg.imglib.container.cell.CellContainerFactory
printProperties() - Method in class mpicbg.imglib.container.constant.ConstantContainerFactory
printProperties() - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
printProperties() - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
printProperties() - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
printProperties() - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
printProperties() - Method in interface mpicbg.imglib.Factory
printProperties() - Method in class mpicbg.imglib.image.ImageFactory
printProperties() - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
printProperties() - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory
process() - Method in interface mpicbg.imglib.algorithm.Algorithm
process() - Method in class mpicbg.imglib.algorithm.CanvasImage
process() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
process() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Finds the regional extrema of the input image.
process() - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Finds the regional extrema of the input image.
process() - Method in class mpicbg.imglib.algorithm.fft.Bandpass
process() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
process() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
process() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
process() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
process() - Method in class mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering
process() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
process() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
process() - Method in class mpicbg.imglib.algorithm.histogram.Histogram
process() - Method in class mpicbg.imglib.algorithm.integral.IntegralImage
process() - Method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
process() - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D
process(float) - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D: The first time, it will prepare the distance transform images, which are computed only once.
process() - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed
process() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
process() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
process() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
process() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
process() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
process() - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks
process() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
process() - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Execute one step of the numerical integration scheme.
process(Localizable, double[]) - Method in class mpicbg.imglib.algorithm.peak.GaussianPeakFitterND: Fit an elliptical gaussian to a peak in the image, using the formula:
process() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection: Get projection along the smallest dimension (which is usually the rotation axis)
process() - Method in class mpicbg.imglib.algorithm.roi.MorphClose
process() - Method in class mpicbg.imglib.algorithm.roi.MorphOpen
process() - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
process() - Method in class mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression
process() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
process() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
process() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
process() - Method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
process() - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
Process - Class in script.imglib.algorithm: TODO
Process(OutputAlgorithm<? extends RealType<?>>) - Constructor for class script.imglib.algorithm.Process: Execute the given OutputAlgorithm and prepare a cursor to deliver its pixel values one by one in successive calls to eval().
Process(Class<Algorithm>, IFunction, Object...) - Constructor for class script.imglib.algorithm.Process: Same as this(algorithmClass, Process.asImage(fn), parameters);
Process(Class<Algorithm>, Image<? extends RealType<?>>, Object...) - Constructor for class script.imglib.algorithm.Process: Initialize and execute the given Algorithm and prepare a cursor to deliver its pixel values one by one in successive calls to eval().
processingTime - Variable in class mpicbg.imglib.algorithm.BenchmarkAlgorithm
processingTime - Variable in class mpicbg.imglib.algorithm.MultiThreadedBenchmarkAlgorithm
processWithOptimizedMethod() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution
processWithOptimizedMethod() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
ProgressTracker - Class in imglib.ops.observer: TODO
ProgressTracker(long, long) - Constructor for class imglib.ops.observer.ProgressTracker
pTime - Variable in class mpicbg.imglib.algorithm.transformation.HoughTransform
push(int[]) - Method in class mpicbg.imglib.algorithm.labeling.AllConnectedComponents.PositionStack

Q

quickKernel2D(short[][], Image<ShortType>) - Static method in class mpicbg.imglib.algorithm.roi.DirectConvolution
quicksort(long[], int, int) - Static method in class mpicbg.imglib.util.Util
quicksort(double[]) - Static method in class mpicbg.imglib.util.Util
quicksort(double[], int, int) - Static method in class mpicbg.imglib.util.Util
quicksort(float[]) - Static method in class mpicbg.imglib.util.Util
quicksort(float[], int, int) - Static method in class mpicbg.imglib.util.Util
quicksort(double[], int[], int, int) - Static method in class mpicbg.imglib.util.Util
quit() - Method in class imglib.ops.operation.AssignOperation

R

radius - Variable in class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
radius - Variable in class mpicbg.imglib.cursor.special.HyperSphereIterator
RadiusNeighborSearch<T extends Leaf<T>> - Class in mpicbg.imglib.algorithm.kdtree: TODO
RadiusNeighborSearch(KDTree<T>) - Constructor for class mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch
Random - Class in script.imglib.math: TODO
Random() - Constructor for class script.imglib.math.Random
Random(Number) - Constructor for class script.imglib.math.Random
RealFunction<T extends RealType<T>> - Interface in imglib.ops.function: TODO
RealHistogramBin(T, HistogramKey<T>) - Constructor for class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory.RealHistogramBin
RealHistogramBinFactory<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.histogram.arbitrary: TODO
RealHistogramBinFactory(double, double) - Constructor for class mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory
RealHistogramBinFactory.RealHistogramBin - Class in mpicbg.imglib.algorithm.histogram.arbitrary
RealType<T extends RealType<T>> - Interface in mpicbg.imglib.type.numeric: TODO
RealTypeConverter<A extends RealType<A>,B extends RealType> - Class in mpicbg.imglib.function: TODO
RealTypeConverter() - Constructor for class mpicbg.imglib.function.RealTypeConverter
RealTypeDisplay<T extends RealType<T>> - Class in mpicbg.imglib.image.display: TODO
RealTypeDisplay(Image<T>) - Constructor for class mpicbg.imglib.image.display.RealTypeDisplay
RealTypeImpl<T extends RealTypeImpl<T>> - Class in mpicbg.imglib.type.numeric.real: TODO
RealTypeImpl() - Constructor for class mpicbg.imglib.type.numeric.real.RealTypeImpl
rearrangeFFTQuadrants(Image<T>, boolean, int) - Static method in class mpicbg.imglib.algorithm.fft.FFTFunctions
Reciprocal - Class in imglib.ops.operator.unary: TODO
Reciprocal() - Constructor for class imglib.ops.operator.unary.Reciprocal
red(int) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
Red - Class in script.imglib.color: TODO
Red(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Red: Extract the red channel of each pixel, in the range [0, 255].
reduceDimensions(ImagePlus) - Static method in class mpicbg.imglib.container.imageplus.ImagePlusContainer: Estimate the minimal required number of dimensions for a given ImagePlus, whereas width and height are always first.
reduceDimensions(int[]) - Static method in class mpicbg.imglib.container.imageplus.ImagePlusContainer
RegionalExtremaFactory<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.extremafinder: Provides a way for the user to automatically create the appropriate RegionalMaximaFinder class without having to deal with the dimensionality.
RegionalExtremaFactory(Image<T>) - Constructor for class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory: Instantiate the factory with a source image and a over-time flag.
RegionalExtremaFinder<T extends RealType<T>> - Interface in mpicbg.imglib.algorithm.extremafinder: Provides a quick algorithm for finding regional maxima in 2- or 3-dimensional images.
RegionalExtremaFinder2D<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.extremafinder: *
RegionalExtremaFinder2D(Image<T>, boolean) - Constructor for class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Constructor for the RegionalMaximaFinder2D class.
RegionalExtremaFinder2D(Image<T>) - Constructor for class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Constructor for the RegionalMaximaFinder2D class, returning a maxima finder.
RegionalExtremaFinder3D<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.extremafinder: This class finds the regional extrema of a 3 dimensional image.
RegionalExtremaFinder3D(Image<T>, boolean) - Constructor for class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Constructor for the RegionalMaximaFinder3D class.
RegionalExtremaFinder3D(Image<T>) - Constructor for class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Constructor for the RegionalMaximaFinder3D class, returning a maxima finder.
RegionOfInterestCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: TODO
RegionOfInterestCursor(LocalizableByDimCursor<T>, int[], int[]) - Constructor for class mpicbg.imglib.cursor.special.RegionOfInterestCursor
remove() - Method in class mpicbg.imglib.cursor.CursorImpl
remove() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
remove() - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
remove() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
remove(Object) - Method in class mpicbg.imglib.image.Image
remove() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
removeAll(Collection<?>) - Method in class mpicbg.imglib.image.Image
removeAllCursors() - Method in class mpicbg.imglib.image.Image: Remove all cursors
removeCursor(Cursor<T>) - Method in class mpicbg.imglib.image.Image: Remove a Cursor from the ArrayList of instantiated Cursors.
removeStatusListener(StatusListener) - Method in class mpicbg.imglib.io.ImageOpener: Removes a listener from those informed when progress occurs.
replaceImage(Image<T>) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
replaceKernel(Image<S>) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
Resample<N extends NumericType<N>> - Class in script.imglib.algorithm: TODO
Resample(Image<N>, Number) - Constructor for class script.imglib.algorithm.Resample: Resample an Image with the best possible mode.
Resample(Image<N>, Number, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Resample
Resample(Image<N>, int[]) - Constructor for class script.imglib.algorithm.Resample
Resample(Image<N>, int[], AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Resample
reset() - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation
reset() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
reset() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
reset() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
reset() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.cell.CellCursor
reset() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
reset() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.constant.ConstantCursor
reset() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
reset() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
reset() - Method in interface mpicbg.imglib.cursor.Cursor
reset() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
reset() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
reset(int, int) - Method in interface mpicbg.imglib.cursor.LocalizablePlane
reset(int, int, int[]) - Method in interface mpicbg.imglib.cursor.LocalizablePlane
reset() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
reset() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
reset() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
reset() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
reset(int, int, int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
reset(int, int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
reset() - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
reset() - Method in class mpicbg.imglib.cursor.special.DiscCursor
reset() - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
reset() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
reset() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
reset() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
reset(int[]) - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
reset(int[], int[]) - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
reset() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
reset() - Method in class mpicbg.imglib.cursor.special.SphereCursor
reset() - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
retainAll(Collection<?>) - Method in class mpicbg.imglib.image.Image
rgba(int, int, int, int) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
rgba(float, float, float, float) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
rgba(double, double, double, double) - Static method in class mpicbg.imglib.type.numeric.RGBALegacyType
RGBA - Class in script.imglib.color: TODO
RGBA(IFunction, IFunction, IFunction, IFunction) - Constructor for class script.imglib.color.RGBA
RGBA(Image<? extends RealType<?>>) - Constructor for class script.imglib.color.RGBA: Interpret the @param img as an ARGB image.
RGBA(Object, Object, Object, Object) - Constructor for class script.imglib.color.RGBA: Accepts only Image, Number, IFunction instances or null as arguments.
RGBA(Object, Object, Object) - Constructor for class script.imglib.color.RGBA: Accepts only Image, Number, IFunction instances or null as arguments.
RGBA(Object, Object) - Constructor for class script.imglib.color.RGBA: Accepts only Image, Number, IFunction instances or null as arguments.
RGBA(Object) - Constructor for class script.imglib.color.RGBA: Accepts only Image, Number, IFunction instances or null as arguments.
RGBA(IFunction, int) - Constructor for class script.imglib.color.RGBA: Creates an RGBA with only the given channel filled, from 1 to 4, where RGBA is really ARGB and thus A=4, R=3, G=2, B=1.
RGBA(Object, int) - Constructor for class script.imglib.color.RGBA: Creates an RGBA with only the given channel filled, from 1 to 4, where RGBA is really ARGB and thus A=4, R=3, G=2, B=1.
RGBALegacyType - Class in mpicbg.imglib.type.numeric: TODO
RGBALegacyType(DirectAccessContainer<RGBALegacyType, ? extends IntAccess>) - Constructor for class mpicbg.imglib.type.numeric.RGBALegacyType
RGBALegacyType(int) - Constructor for class mpicbg.imglib.type.numeric.RGBALegacyType
RGBALegacyType() - Constructor for class mpicbg.imglib.type.numeric.RGBALegacyType
RGBALegacyTypeDisplay - Class in mpicbg.imglib.image.display.imagej: TODO
RGBALegacyTypeDisplay(Image<RGBALegacyType>) - Constructor for class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
RGBAOp - Class in script.imglib.color.fn: TODO
RGBAOp(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.fn.RGBAOp
right - Variable in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
Rint - Class in script.imglib.math: TODO
Rint(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Rint
Rint(IFunction) - Constructor for class script.imglib.math.Rint
Rint(Number) - Constructor for class script.imglib.math.Rint
ROIAlgorithm<T extends RealType<T>,S extends RealType<S>> - Class in mpicbg.imglib.algorithm: ROIAlgorithm implements a framework against which to build operations of one image against another, like convolution, cross-correlation, or morphological operations.
ROIAlgorithm(S, Image<T>, int[]) - Constructor for class mpicbg.imglib.algorithm.ROIAlgorithm: Creates an ROIAlgorithm with default OutOfBoundsStrategyValueFactory, with value Zero.
ROIAlgorithm(S, Image<T>, int[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.ROIAlgorithm
root - Variable in class mpicbg.imglib.algorithm.kdtree.KDTree
round() - Method in interface mpicbg.imglib.type.numeric.ExponentialMathType
round() - Method in class mpicbg.imglib.type.numeric.real.DoubleType
round(float) - Static method in class mpicbg.imglib.util.Util
round(double) - Static method in class mpicbg.imglib.util.Util
Round - Class in script.imglib.math: TODO
Round(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Round
Round(IFunction) - Constructor for class script.imglib.math.Round
Round(Number) - Constructor for class script.imglib.math.Round
run() - Method in class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction

S

Saturation - Class in script.imglib.color: TODO
Saturation(Image<? extends RGBALegacyType>) - Constructor for class script.imglib.color.Saturation: Extract the saturation component of each pixel, in the range [0, 1].
save(Image<T>, String) - Static method in class script.imglib.ImgLib: Save an image in the appropriate file format according to the filename extension specified in .
save(Image<T>, String, String) - Static method in class script.imglib.ImgLib: Save an image in the format specified by , which can be any of: "tif", "tiff", "zip", "gif", "jpg", "jpeg", "bmp", "pgm", "png", "raw".
saveAsTiffs(Image<T>, String, int) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
saveAsTiffs(Image<T>, String, String, int) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
scale - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
Scale2D<N extends NumericType<N>> - Class in script.imglib.algorithm: TODO
Scale2D(Object, Number) - Constructor for class script.imglib.algorithm.Scale2D: Scale the given image in 2D using the best interpolation available.
Scale2D(Object, Number, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale2D
Scale2D(Object, Number, Number) - Constructor for class script.imglib.algorithm.Scale2D
Scale2D(Object, Number, Number, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale2D
Scale2D(Object, float, float, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale2D
Scale3D<N extends NumericType<N>> - Class in script.imglib.algorithm: TODO
Scale3D(Object, Number) - Constructor for class script.imglib.algorithm.Scale3D: Scale the given image in 2D using the best interpolation available.
Scale3D(Object, Number, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale3D
Scale3D(Object, Number, Number, Number) - Constructor for class script.imglib.algorithm.Scale3D
Scale3D(Object, Number, Number, Number, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale3D
Scale3D(Object, float, float, float, AbstractAffine3D.Mode) - Constructor for class script.imglib.algorithm.Scale3D
ScaleAreaAveraging2d<T extends RealType<T>,R extends RealType<R>> - Class in mpicbg.imglib.algorithm.integral: TODO
ScaleAreaAveraging2d(Image<T>, R, int[]) - Constructor for class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
ScaleAreaAveraging2d(Image<T>, R, Converter<T, R>, int[]) - Constructor for class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
scaled - Variable in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
ScaleSpace<A extends Type<A>,B extends RealType> - Class in mpicbg.imglib.algorithm.scalespace: TODO
ScaleSpace(Image<A>, ImageFactory, Converter<A, B>, double) - Constructor for class mpicbg.imglib.algorithm.scalespace.ScaleSpace
script.imglib - package script.imglib
script.imglib.algorithm - package script.imglib.algorithm
script.imglib.algorithm.fn - package script.imglib.algorithm.fn
script.imglib.analysis - package script.imglib.analysis
script.imglib.color - package script.imglib.color
script.imglib.color.fn - package script.imglib.color.fn
script.imglib.math - package script.imglib.math
script.imglib.math.fn - package script.imglib.math.fn
seededWatershed(Image<T>, Labeling<L>, int[][], Labeling<L>) - Static method in class mpicbg.imglib.algorithm.labeling.Watershed: The seeded watershed uses a pre-existing labeling of the space where the labels act as seeds for the output watershed.
set(LabelingType<T>) - Method in class mpicbg.imglib.labeling.LabelingType
set(BasePairBitType.Base) - Method in interface mpicbg.imglib.type.BasePairType
set(boolean) - Method in interface mpicbg.imglib.type.BooleanType
set(BasePairBitType.Base) - Method in class mpicbg.imglib.type.label.BasePairBitType
set(BasePairBitType) - Method in class mpicbg.imglib.type.label.BasePairBitType
set(BasePairBitType.Base) - Method in class mpicbg.imglib.type.label.BasePairCharType
set(BasePairCharType) - Method in class mpicbg.imglib.type.label.BasePairCharType
set(FakeType) - Method in class mpicbg.imglib.type.label.FakeType
set(boolean) - Method in class mpicbg.imglib.type.logic.BitType
set(BitType) - Method in class mpicbg.imglib.type.logic.BitType
set(double, double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
set(ComplexDoubleType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
set(float, float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
set(ComplexFloatType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
set(T) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
set(byte) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
set(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
set(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
set(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
set(int) - Method in class mpicbg.imglib.type.numeric.integer.IntType
set(long) - Method in class mpicbg.imglib.type.numeric.integer.LongType
set(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
set(short) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
set(short) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
set(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
set(long) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
set(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
set(double) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
set(float) - Method in class mpicbg.imglib.type.numeric.real.FloatType
set(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
set(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
set(int) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
set(RGBALegacyType) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
set(T) - Method in interface mpicbg.imglib.type.Type: Sets the value of another Type.
setAdditionalNormalization(float) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setAllowBorderPeak(boolean) - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks: Set the behavior for finding peak at the image boundaries.
setAllowedToMoveInDim(boolean[]) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setAllowMaximaTolerance(boolean) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setAlpha(int) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory: Set the rectangular radius of the window for perfoming the lanczos interpolation
setBandPass(boolean) - Method in class mpicbg.imglib.algorithm.fft.Bandpass
setBandPassRadius(int, int) - Method in class mpicbg.imglib.algorithm.fft.Bandpass
setBitDepth(int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
setCacheSize(int) - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
setCaching(boolean) - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
setCalibration(float[]) - Method in class mpicbg.imglib.image.Image
setCalibration(float, int) - Method in class mpicbg.imglib.image.Image
setCalibrationFromImagePlus(Image<?>, ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
setCanMoveOutside(boolean) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setChar(char) - Method in class mpicbg.imglib.type.label.BasePairCharType
setClipping(boolean) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory: The lanczos-interpolation can create values that are bigger or smaller than the original values, so they can be clipped to the range of the RealType if wanted
setCommonFadeOutDistance(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
setCommonRelativeFadeOutDistance(float) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
setComplex(float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
setComplex(double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
setComplex(float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
setComplex(double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
setComplex(float) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setComplex(double) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setComplex(float) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
setComplex(double) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
setComplexNumber(float, float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
setComplexNumber(double, double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
setComplexNumber(float, float) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setComplexNumber(double, double) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setComputeConvolutionsParalell(boolean) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
setComputeFFTinParalell(boolean) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setCoordinateRecursive(int, int, int[], boolean[][]) - Static method in class mpicbg.imglib.util.Util: recursively get coordinates covering all binary combinations for the given dimensionality example for 3d: x y z index 0 0 0 [0] 1 0 0 [1] 0 1 0 [2] 1 1 0 [3] 0 0 1 [4] 1 0 1 [5] 0 1 1 [6] 1 1 1 [7] All typical call will look like that: boolean[][] positions = new boolean[ MathLib.pow( 2, numDimensions ) ][ numDimensions ]; MathLib.setCoordinateRecursive( numDimensions - 1, numDimensions, new int[ numDimensions ], positions );
setCropBackToOriginalSize(boolean) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setCrossCorrelationPeak(float) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setCustomOutOfBoundsStrategy(OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setDebug(boolean) - Method in interface mpicbg.imglib.cursor.Cursor
setDebug(boolean) - Method in class mpicbg.imglib.cursor.CursorImpl
setDebug(boolean) - Method in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
setDebug(boolean) - Method in class mpicbg.imglib.cursor.special.AbstractSpecialCursor
setDebug(boolean) - Method in class mpicbg.imglib.cursor.special.HyperSphereIterator
setDebug(boolean) - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
setDebug(boolean) - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
setDebug(boolean) - Method in class mpicbg.imglib.labeling.LocalizableLabelingCursor
setDefaultDisplay() - Method in class mpicbg.imglib.image.Image: Sets the default Display of this Image as defined by the Type
setDeltaT(float) - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Set the integration constant value for the numerical integration scheme.
setDiffusionFunction(AnisotropicDiffusion.DiffusionFunction) - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Set the diffusion function used to compute conduction coefficients.
setDimensions(int[]) - Method in class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion: Set the dimensions to be considered in neighborhood.
setDisplay(Display<T>) - Method in class mpicbg.imglib.image.Image: Sets the Display associated with this Image.
setDoGPeaks(List<DifferenceOfGaussianPeak<T>>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setDoScaling(boolean) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setDownSamplingFactor(float) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setErrorMessage(String) - Method in class mpicbg.imglib.algorithm.ROIAlgorithm
setErrorMessage(String) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setErrorMsg(String) - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
setExclusion(double[]) - Method in class mpicbg.imglib.algorithm.transformation.HoughTransform
setExponent(float) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
setExtendedOriginalImageSize(int[]) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setExtendImageByKernelSize(boolean) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution: Defines if the image is extended by half the kernelsize all around its edges before computation.
setFadeOutDistance(int[]) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
setFFTOptimization(FourierTransform.FFTOptimization) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setFitValue(T) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setImage(Image<T>) - Method in class mpicbg.imglib.algorithm.fft.Bandpass
setImage(Image<A>) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
setImageExtension(int[]) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setImageFactory(ImageFactory<S>) - Method in class mpicbg.imglib.algorithm.ROIAlgorithm: Set the ImageFactory used to create the output Image
setImageOutOfBoundsStrategy(OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
setImgValue(T) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setInPlace(boolean) - Method in class mpicbg.imglib.algorithm.fft.Bandpass
setInPlaceTransform(boolean) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setInputCondition(int, Condition<T>) - Method in class imglib.ops.operation.AssignOperation
setInputImage(Image<T>) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setInputRegion(int, int[], int[]) - Method in class imglib.ops.operation.AssignOperation
setInteger(int) - Method in class mpicbg.imglib.type.logic.BitType
setInteger(long) - Method in class mpicbg.imglib.type.logic.BitType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.ByteType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.IntType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.IntType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.LongType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.LongType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.ShortType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedByteType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedIntType
setInteger(int) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
setInteger(long) - Method in class mpicbg.imglib.type.numeric.integer.UnsignedShortType
setInteger(int) - Method in interface mpicbg.imglib.type.numeric.IntegerType
setInteger(long) - Method in interface mpicbg.imglib.type.numeric.IntegerType
setIntensity(int) - Method in class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction
setIntensity(int) - Method in class mpicbg.imglib.image.display.imagej.SliceTransformableExtractionFloat
setInterpolatorFactory(InterpolatorFactory<T>) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setInvestigateNumPeaks(int) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setKeepDoGImage(boolean) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
setKeepImgFFT(boolean) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution: By default, he will not do the computation in-place
setKeepPhaseCorrelationMatrix(boolean) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setLabel(T) - Method in class mpicbg.imglib.labeling.LabelingType: Assign a pixel a single label
setLabeling(List<T>) - Method in class mpicbg.imglib.labeling.LabelingType: Set the labeling at the current pixel
setLabeling(T[]) - Method in class mpicbg.imglib.labeling.LabelingType
setLabelingCursorStrategy(LabelingCursorStrategy<T, Labeling<T>>) - Method in class mpicbg.imglib.labeling.Labeling: Use an alternative strategy for making labeling cursors.
setLaPlaceImage(Image<T>) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setLinkedType(T) - Method in interface mpicbg.imglib.container.DirectAccessContainer
setLinkedType(T) - Method in class mpicbg.imglib.container.DirectAccessContainerImpl
setMax(double) - Method in class mpicbg.imglib.image.display.Display
setMaximaTolerance(float) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setMaxNumMoves(int) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setMin(double) - Method in class mpicbg.imglib.image.display.Display
setMinBackgroundPeakHeight(double) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: The algorithm finds both foreground (local maxima) and background peaks (local minima) to act as seeds for the watershed.
setMinExtension(int) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setMinFadeOutDistance(int) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory
setMinForegroundPeakHeight(double) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: The algorithm finds both foreground (local maxima) and background peaks (local minima) to act as seeds for the watershed.
setMinImageSize(int) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
setMinimalPixelOverlap(int[]) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setMinimalPixelOverlap(int) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setMinMax() - Method in class mpicbg.imglib.image.display.BasePairTypeDisplay
setMinMax() - Method in class mpicbg.imglib.image.display.BitTypeDisplay
setMinMax() - Method in class mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay
setMinMax() - Method in class mpicbg.imglib.image.display.Display
setMinMax(double, double) - Method in class mpicbg.imglib.image.display.Display
setMinMax() - Method in class mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
setMinMax() - Method in class mpicbg.imglib.image.display.IntegerTypeDisplay
setMinMax() - Method in class mpicbg.imglib.image.display.RealTypeDisplay
setMinPeakValue(B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
setMinPeakValue(B) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal
setName(String) - Method in class mpicbg.imglib.algorithm.ROIAlgorithm: Set the name given to the output image.
setName(String) - Method in interface mpicbg.imglib.container.ImageProperties
setName(String) - Method in class mpicbg.imglib.image.Image
setNewImageSize(int, int) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setNewImageSize(int[]) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setNewSize(int[]) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setNIOUse(boolean) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
setNormalizationThreshold(int) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setNumPixels(long) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setNumQuanta(int) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: See enableQuantization You must enableQuantization as well as set the number of quanta.
setNumThreads() - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.correlation.CrossCorrelation
setNumThreads() - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.fft.FourierConvolution
setNumThreads() - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setNumThreads() - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setNumThreads() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setNumThreads() - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setNumThreads() - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
setNumThreads() - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.math.ComputeMinMax
setNumThreads() - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.math.ImageCalculator
setNumThreads() - Method in class mpicbg.imglib.algorithm.math.ImageConverter
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.math.ImageConverter
setNumThreads() - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
setNumThreads() - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.mirror.MirrorImage
setNumThreads() - Method in interface mpicbg.imglib.algorithm.MultiThreaded: Sets the number of threads to the amount of processors available
setNumThreads(int) - Method in interface mpicbg.imglib.algorithm.MultiThreaded: Sets the number of threads
setNumThreads() - Method in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.MultiThreadedAlgorithm
setNumThreads() - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.projection.MaxProjection
setNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian
setNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace
setNumThreads() - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setNumThreads(int) - Method in class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
setOffset(int, int) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setOffset(float[]) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setOffset(float[]) - Method in class mpicbg.imglib.image.display.imagej.InverseTransformDescription
setOne() - Method in class mpicbg.imglib.type.logic.BitType
setOne() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
setOne() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
setOne() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
setOne() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
setOne() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
setOne() - Method in class mpicbg.imglib.type.numeric.integer.LongType
setOne() - Method in interface mpicbg.imglib.type.numeric.NumericType
setOne() - Method in class mpicbg.imglib.type.numeric.real.FloatType
setOne() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
setOne() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
setOptimizedContainerUse(boolean) - Method in class mpicbg.imglib.container.ContainerFactory
setOptimizedContainerUse(boolean) - Method in class mpicbg.imglib.image.ImageFactory
setOrigin(int[]) - Method in class mpicbg.imglib.algorithm.fft.Bandpass
setOriginalInvPCMPosition(int[]) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setOriginalOffset(int[]) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setOriginalSize(int[]) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T>) - Method in interface mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder: Set the strategy used by this extrema finder to deal with edge pixels.
setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T>) - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
setOutputCondition(Condition<T>) - Method in class imglib.ops.operation.AssignOperation
setOutputDimensions(int, int) - Method in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
setOutputImageFactory(ImageFactory<LabelingType<L>>) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Set the image factory to use when creating the Labeling.
setOutputImageFactory(ImageFactory<T>) - Method in class mpicbg.imglib.algorithm.transformation.ImageTransform
setOutputLabeling(Labeling<L>) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Supply a labeling that will be filled with labelings by the image.
setOutputRegion(int[], int[]) - Method in class imglib.ops.operation.AssignOperation
setParameters(String) - Method in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory
setParameters(String) - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
setParameters(String) - Method in class mpicbg.imglib.container.cell.CellContainerFactory
setParameters(String) - Method in class mpicbg.imglib.container.constant.ConstantContainerFactory
setParameters(String) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerFactory
setParameters(String) - Method in class mpicbg.imglib.container.planar.PlanarContainerFactory
setParameters(String) - Method in class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
setParameters(String) - Method in class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
setParameters(String) - Method in interface mpicbg.imglib.Factory
setParameters(String) - Method in class mpicbg.imglib.image.ImageFactory
setParameters(String) - Method in class mpicbg.imglib.interpolation.InterpolatorFactory
setParameters(String) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory
setParent(ImagePlus) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
setPeakType(DifferenceOfGaussian.SpecialPoint) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setPhaseCorrelationPeak(float) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setPixelLocation(int, int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setPixelLocation(int[]) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setPixels(Object, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Assigns a pixel array to the specified slice, where 1<=n<=nslices.
setPixels(Object, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Assigns a pixel array to the specified slice, where 1<=n<=nslices.
setPlane(int, A) - Method in interface mpicbg.imglib.container.basictypecontainer.PlanarAccess
setPlane(int, ByteArray) - Method in class mpicbg.imglib.container.imageplus.ByteImagePlus: This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, FloatArray) - Method in class mpicbg.imglib.container.imageplus.FloatImagePlus: This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, IntArray) - Method in class mpicbg.imglib.container.imageplus.IntImagePlus: This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, ShortArray) - Method in class mpicbg.imglib.container.imageplus.ShortImagePlus: This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, A) - Method in class mpicbg.imglib.container.planar.PlanarContainer
setPosition(int[]) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setPosition(int[]) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPosition(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPosition(int, int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
setPosition(int[]) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
setPosition(int, int) - Method in class mpicbg.imglib.cursor.link.GenericCursorLink
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.link.NullLink
setPosition(int[]) - Method in class mpicbg.imglib.cursor.link.NullLink
setPosition(int, int) - Method in class mpicbg.imglib.cursor.link.NullLink
setPosition(Localizable) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
setPosition(int[]) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
setPosition(int, int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim
setPosition(int, int, int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
setPosition(Localizable) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
setPosition(int[]) - Method in class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.Vector
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.Vector1d
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.Vector2d
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.Vector3d
setPosition(int, int) - Method in class mpicbg.imglib.cursor.vector.Vector4d
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.dct.DCTInterpolator
setPosition(float[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Sets the interpolator to a random position inside or out of image bounds.
setPosition(double[]) - Method in interface mpicbg.imglib.interpolation.Interpolator: Sets the interpolator to a random position inside or out of image bounds.
setPosition(float) - Method in interface mpicbg.imglib.interpolation.Interpolator1D: Sets the interpolator to a random position inside or out of image bounds.
setPosition(float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator2D: Sets the interpolator to a random position inside or out of image bounds.
setPosition(float, float, float) - Method in interface mpicbg.imglib.interpolation.Interpolator3D: Sets the interpolator to a random position inside or out of image bounds.
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator
setPosition(float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator1D
setPosition(float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2D
setPosition(float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType
setPosition(float, float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3D
setPosition(float, float, float) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator
setPosition(float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D
setPosition(float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D
setPosition(float, float, float) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
setPosition(float[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
setPosition(double[]) - Method in class mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D
setPositionX(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPositionX(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPositionX(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
setPositionY(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPositionY(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPositionY(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
setPositionZ(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
setPositionZ(int) - Method in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
setPositionZ(int) - Method in interface mpicbg.imglib.cursor.LocalizableByDim3D
setPreProcessing(FourierTransform.PreProcessing) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setReal(float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
setReal(double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
setReal(float) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
setReal(double) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
setReal(float) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setReal(double) - Method in interface mpicbg.imglib.type.numeric.ComplexType
setReal(float) - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
setReal(double) - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
setReal(float) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
setReal(double) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
setReal(float) - Method in class mpicbg.imglib.type.numeric.real.FloatType
setReal(double) - Method in class mpicbg.imglib.type.numeric.real.FloatType
setRearrangement(FourierTransform.Rearrangement) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setRearrangement(FourierTransform.Rearrangement) - Method in class mpicbg.imglib.algorithm.fft.InverseFourierTransform
setRegion(int, int[], int[]) - Method in class imglib.ops.operation.MultiImageIterator
setRelativeFadeOutDistance(float) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setRelativeImageExtension(float) - Method in class mpicbg.imglib.algorithm.fft.FourierTransform
setScale(double[]) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Set the scale of the objects to be found.
setShapeListCachingStrategy(ShapeListCache<T>) - Method in class mpicbg.imglib.container.shapelist.ShapeListCached
setSigma(double) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
setSigma(double[]) - Method in class mpicbg.imglib.algorithm.gauss.GaussianConvolution3
setSize(float) - Method in class mpicbg.imglib.cursor.special.DiscCursor: Change the radius of the disc this cursor iterates on.
setSize(float) - Method in class mpicbg.imglib.cursor.special.DomainCursor: Change the size of the domain this cursor iterates on.
setSize(float) - Method in class mpicbg.imglib.cursor.special.SphereCursor: Change the radius of the sphere this cursor iterates on.
setSliceLabel(String, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Sets the label of the specified slice, where 1<=n<=nslices.
setSliceLabel(String, int) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Sets the label of the specified slice, where 1<=n<=nslices.
setSortPhaseCorrelation(boolean) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
setSourceSigma(float) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setStructuringElement(int[][]) - Method in class mpicbg.imglib.algorithm.labeling.GradientWatershed: Set the current structuring element.
setSubPixelLocationOffset(float, int) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setSubPixelLocationOffset(float[]) - Method in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
setSuppression(double) - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks: Sets the peak suppression region to a spheroid of radius r.
setSuppression(double[]) - Method in class mpicbg.imglib.algorithm.math.PickImagePeaks: Sets the peak suppression region to an ellipsoid with dimensional axes corresponding to the elements in r.
setTargetSigma(float) - Method in class mpicbg.imglib.algorithm.gauss.DownSample
setThreshold(T) - Method in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
setThreshold(T) - Method in interface mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder: Set the threshold value under which (or over which, in the case of a minima finder) pixels are ignored.
setThreshold(T) - Method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform
setValue(int, boolean) - Method in class mpicbg.imglib.container.basictypecontainer.array.BitArray
setValue(int, byte) - Method in class mpicbg.imglib.container.basictypecontainer.array.ByteArray
setValue(int, char) - Method in class mpicbg.imglib.container.basictypecontainer.array.CharArray
setValue(int, double) - Method in class mpicbg.imglib.container.basictypecontainer.array.DoubleArray
setValue(int, float) - Method in class mpicbg.imglib.container.basictypecontainer.array.FloatArray
setValue(int, int) - Method in class mpicbg.imglib.container.basictypecontainer.array.IntArray
setValue(int, long) - Method in class mpicbg.imglib.container.basictypecontainer.array.LongArray
setValue(int, byte) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOByteArray
setValue(int, char) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOCharArray
setValue(int, double) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray
setValue(int, float) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray
setValue(int, int) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOIntArray
setValue(int, long) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOLongArray
setValue(int, short) - Method in class mpicbg.imglib.container.basictypecontainer.array.NIOShortArray
setValue(int, short) - Method in class mpicbg.imglib.container.basictypecontainer.array.ShortArray
setValue(int, boolean) - Method in interface mpicbg.imglib.container.basictypecontainer.BitAccess
setValue(int, byte) - Method in interface mpicbg.imglib.container.basictypecontainer.ByteAccess
setValue(int, char) - Method in interface mpicbg.imglib.container.basictypecontainer.CharAccess
setValue(int, double) - Method in interface mpicbg.imglib.container.basictypecontainer.DoubleAccess
setValue(int, float) - Method in interface mpicbg.imglib.container.basictypecontainer.FloatAccess
setValue(int, int) - Method in interface mpicbg.imglib.container.basictypecontainer.IntAccess
setValue(int, long) - Method in interface mpicbg.imglib.container.basictypecontainer.LongAccess
setValue(int, short) - Method in interface mpicbg.imglib.container.basictypecontainer.ShortAccess
setValue(int, boolean) - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainerAccessor
setValue(int, byte) - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainerAccessor
setValue(int, char) - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainerAccessor
setValue(int, double) - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainerAccessor
setValue(int, float) - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainerAccessor
setValue(int, int) - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainerAccessor
setValue(int, long) - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainerAccessor
setValue(int, short) - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainerAccessor
setValue(T) - Method in class mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory
setValue(byte) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
setValue(int) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
setValue(short) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
setVerifyWithCrossCorrelation(boolean) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
setWeight(float) - Method in class mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D: After changing the weight, it's totally valid to call process() again, and then getResult().
setZero() - Method in class mpicbg.imglib.type.logic.BitType
setZero() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
setZero() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
setZero() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
setZero() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
setZero() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
setZero() - Method in class mpicbg.imglib.type.numeric.integer.LongType
setZero() - Method in interface mpicbg.imglib.type.numeric.NumericType
setZero() - Method in class mpicbg.imglib.type.numeric.real.FloatType
setZero() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
setZero() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
ShapeList<T extends Type<T>> - Class in mpicbg.imglib.container.shapelist: TODO
ShapeList(ShapeListContainerFactory, int[], T) - Constructor for class mpicbg.imglib.container.shapelist.ShapeList
ShapeList(int[], T) - Constructor for class mpicbg.imglib.container.shapelist.ShapeList
ShapeListCache<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListCache(int, ShapeListCached<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListCache
ShapeListCached<T extends Type<T>> - Class in mpicbg.imglib.container.shapelist: TODO
ShapeListCached(ShapeListContainerFactory, int[], T) - Constructor for class mpicbg.imglib.container.shapelist.ShapeListCached
ShapeListCached(int[], T, int) - Constructor for class mpicbg.imglib.container.shapelist.ShapeListCached
ShapeListCached(int[], T) - Constructor for class mpicbg.imglib.container.shapelist.ShapeListCached
ShapeListCachedLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListCachedLocalizableByDimCursor(ShapeList<T>, Image<T>, ShapeListCache<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimCursor
ShapeListCachedLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListCachedLocalizableByDimOutOfBoundsCursor(ShapeList<T>, Image<T>, OutOfBoundsStrategyFactory<T>, ShapeListCache<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimOutOfBoundsCursor
ShapeListCachedLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListCachedLocalizablePlaneCursor(ShapeList<T>, Image<T>, ShapeListCache<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizablePlaneCursor
ShapeListCacheFIFO<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListCacheFIFO(int, ShapeListCached<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListCacheFIFO
ShapeListContainerFactory - Class in mpicbg.imglib.container.shapelist: TODO
ShapeListContainerFactory() - Constructor for class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
ShapeListContainerFactory(int) - Constructor for class mpicbg.imglib.container.shapelist.ShapeListContainerFactory
ShapeListLocalizableByDimCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist
ShapeListLocalizableByDimCursor(ShapeList<T>, Image<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor
ShapeListLocalizableByDimOutOfBoundsCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListLocalizableByDimOutOfBoundsCursor(ShapeList<T>, Image<T>, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor
ShapeListLocalizablePlaneCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.shapelist: TODO
ShapeListLocalizablePlaneCursor(ShapeList<T>, Image<T>) - Constructor for class mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor
shapeLists - Variable in class mpicbg.imglib.container.shapelist.ShapeList
ShortAccess - Interface in mpicbg.imglib.container.basictypecontainer: TODO
ShortArray - Class in mpicbg.imglib.container.basictypecontainer.array: TODO
ShortArray(int) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.ShortArray
ShortArray(short[]) - Constructor for class mpicbg.imglib.container.basictypecontainer.array.ShortArray
ShortDynamicContainer<T extends Type<T>> - Class in mpicbg.imglib.container.dynamic: TODO
ShortDynamicContainer(DynamicContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.dynamic.ShortDynamicContainer
ShortDynamicContainerAccessor - Class in mpicbg.imglib.container.dynamic: TODO
ShortDynamicContainerAccessor(ShortDynamicContainer<?>, int) - Constructor for class mpicbg.imglib.container.dynamic.ShortDynamicContainerAccessor
shortHoughLine(Image<T>) - Static method in class mpicbg.imglib.algorithm.transformation.HoughLineTransform: Creates a default HoughLineTransform with vote space.
ShortImagePlus<T extends Type<T>> - Class in mpicbg.imglib.container.imageplus: ImagePlusContainer for short-stored data.
ShortImagePlus(ImagePlusContainerFactory, int[], int) - Constructor for class mpicbg.imglib.container.imageplus.ShortImagePlus: Standard constructor as called by default factories.
ShortImagePlus(ImagePlus, ImagePlusContainerFactory) - Constructor for class mpicbg.imglib.container.imageplus.ShortImagePlus
ShortType - Class in mpicbg.imglib.type.numeric.integer: TODO
ShortType(DirectAccessContainer<ShortType, ? extends ShortAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.ShortType
ShortType(short) - Constructor for class mpicbg.imglib.type.numeric.integer.ShortType
ShortType() - Constructor for class mpicbg.imglib.type.numeric.integer.ShortType
show(Image<T>) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
sigma1 - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
sigma2 - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
sign - Variable in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D: Causes the algorithm to find regional maxima by default (1 = maxima, -1 = minima).
sign - Variable in class mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D: Causes the algorithm to find regional maxima by default (1 = maxima, -1 = minima).
Signum - Class in script.imglib.math: TODO
Signum(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Signum
Signum(IFunction) - Constructor for class script.imglib.math.Signum
Signum(Number) - Constructor for class script.imglib.math.Signum
SimpleCollectionStrategy() - Constructor for class mpicbg.imglib.algorithm.roi.StatisticalOperation.SimpleCollectionStrategy
SimpleMultiThreading - Class in mpicbg.imglib.multithreading: TODO
SimpleMultiThreading() - Constructor for class mpicbg.imglib.multithreading.SimpleMultiThreading
SimpleNode - Class in mpicbg.imglib.algorithm.kdtree.node: TODO
SimpleNode(SimpleNode) - Constructor for class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
SimpleNode(float[]) - Constructor for class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
Sin - Class in script.imglib.math: TODO
Sin(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Sin
Sin(IFunction) - Constructor for class script.imglib.math.Sin
Sin(Number) - Constructor for class script.imglib.math.Sin
sinc(float, float) - Static method in class mpicbg.imglib.interpolation.lanczos.LanczosInterpolator
Sinh - Class in script.imglib.math: TODO
Sinh(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Sinh
Sinh(IFunction) - Constructor for class script.imglib.math.Sinh
Sinh(Number) - Constructor for class script.imglib.math.Sinh
size - Variable in class mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d
size - Variable in class mpicbg.imglib.cursor.special.DomainCursor: The domain size, in physical units.
size() - Method in class mpicbg.imglib.image.Image
sliceIndex - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
slices - Variable in class mpicbg.imglib.container.planar.PlanarContainer
sliceSteps - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
SliceTransformableExtraction<T extends Type<T>> - Class in mpicbg.imglib.image.display.imagej: TODO
SliceTransformableExtraction(int, InverseTransformDescription<T>, ImagePlus, int[], int, int, int, int, int, int) - Constructor for class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction
SliceTransformableExtractionFloat<T extends Type<T>> - Class in mpicbg.imglib.image.display.imagej: TODO
SliceTransformableExtractionFloat(int, InverseTransformDescription<T>, float[], ImagePlus, int[], int, int, int, int, int, int) - Constructor for class mpicbg.imglib.image.display.imagej.SliceTransformableExtractionFloat
sobelHorizontal() - Static method in class mpicbg.imglib.algorithm.roi.DirectConvolution
sobelVertical() - Static method in class mpicbg.imglib.algorithm.roi.DirectConvolution
solve(double[][], double[], double[], FitFunction, double, double, int) - Static method in class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver: Minimize E = sum {(y[k] - f(x[k],a)) }^2 Note that function implements the value and gradient of f(x,a), NOT the value and gradient of E with respect to a!
SortedGrayLevelIteratorAllContainers<T extends IntegerType<T>> - Class in mpicbg.imglib.cursor.special: Iterate over all pixels ordered by their gray level
SortedGrayLevelIteratorAllContainers(Image<T>) - Constructor for class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers
SortedGrayLevelIteratorArrayContainerOnly<T extends IntegerType<T>> - Class in mpicbg.imglib.cursor.special: Iterate over all pixels ordered by their gray level
SortedGrayLevelIteratorArrayContainerOnly(Image<T>) - Constructor for class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly
SortedGrayLevelIteratorFactory<T extends IntegerType<T>> - Class in mpicbg.imglib.cursor.special: TODO
SortedGrayLevelIteratorFactory(Container<T>) - Constructor for class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
SortedGrayLevelIteratorFactory(Image<T>) - Constructor for class mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory
sortedLinIdx - Variable in class mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator
SphereCursor<T extends Type<T>> - Class in mpicbg.imglib.cursor.special: This class implements a LocalizableCursor that iterates over all the pixel within the volume of a 3D ball, whose center and radius are given at construction.
SphereCursor(Image<T>, float[], float, float[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image with a given spatial calibration.
SphereCursor(Image<T>, float[], float, float[]) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image with a given spatial calibration, using a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
SphereCursor(Image<T>, double[], double, double[]) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image with a given spatial calibration, using a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
SphereCursor(Image<T>, float[], float) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image, using the spatial calibration stored in the image and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
SphereCursor(Image<T>, double[], double) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image, using the spatial calibration stored in the image and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
SphereCursor(Image<T>, Localizable, float, float[], OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image with a given spatial calibration and a given OutOfBoundsStrategyFactory to handle off-bounds locations.
SphereCursor(Image<T>, Localizable, float, float[]) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image, using the given spatial calibration and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
SphereCursor(Image<T>, Localizable, float) - Constructor for class mpicbg.imglib.cursor.special.SphereCursor: Construct a SphereCursor on a 3D image, using the spatial calibration stored in the image and a default OutOfBoundsStrategyValueFactory to handle off-bounds locations.
Sqr - Class in imglib.ops.operator.unary: TODO
Sqr() - Constructor for class imglib.ops.operator.unary.Sqr
Sqrt - Class in imglib.ops.operator.unary: TODO
Sqrt() - Constructor for class imglib.ops.operator.unary.Sqrt
Sqrt - Class in script.imglib.math: TODO
Sqrt(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Sqrt
Sqrt(IFunction) - Constructor for class script.imglib.math.Sqrt
Sqrt(Number) - Constructor for class script.imglib.math.Sqrt
standardCellSize - Variable in class mpicbg.imglib.container.cell.CellContainerFactory
start(Thread[]) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
startAndJoin(Thread[]) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
startPosition - Variable in class mpicbg.imglib.multithreading.Chunk
startTask(Runnable) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
startTask(Runnable, int) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
StatisticalOperation<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.roi: StatisticalOperation provides the framework to create Order Statistic operations.
StatisticalOperation(Image<T>, StructuringElement) - Constructor for class mpicbg.imglib.algorithm.roi.StatisticalOperation
StatisticalOperation(Image<T>, StructuringElement, OutOfBoundsStrategyFactory<T>) - Constructor for class mpicbg.imglib.algorithm.roi.StatisticalOperation
StatisticalOperation.SimpleCollectionStrategy<R extends RealType<R>> - Class in mpicbg.imglib.algorithm.roi: Simple, dumb statistics collection implementation.
StatisticalOperation.StatisticsCollectionStrategy<R extends RealType<R>> - Interface in mpicbg.imglib.algorithm.roi: Implements a strategy for populating the sorted list associated with this StatisticalOperation.
statistics - Variable in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
statsOp(LocalizableByDimCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.MedianFilter
statsOp(LocalizableByDimCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.MorphDilate
statsOp(LocalizableByDimCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.MorphErode
statsOp(LocalizableByDimCursor<T>) - Method in class mpicbg.imglib.algorithm.roi.StatisticalOperation: Perform the order statistic operation, then set the value of the type of the given cursor.
step - Variable in class mpicbg.imglib.container.array.Array
step - Variable in class mpicbg.imglib.container.cell.Cell
step - Variable in class mpicbg.imglib.container.dynamic.DynamicContainer
step - Variable in class mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor
step - Variable in class mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor
step - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
step - Variable in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor
step - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
Stopable - Interface in mpicbg.imglib.multithreading: TODO
stopThread - Variable in class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction
stopThread() - Method in class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction
stopThread() - Method in interface mpicbg.imglib.multithreading.Stopable
storage - Variable in class mpicbg.imglib.labeling.LabelingType
storageIndex - Variable in class mpicbg.imglib.labeling.LocalizableLabelingCursor
strategy - Variable in class mpicbg.imglib.labeling.Labeling
StrongEdgeEnhancer(double) - Constructor for class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.StrongEdgeEnhancer
structuringElement - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
StructuringElement - Class in mpicbg.imglib.algorithm.roi: TODO
StructuringElement(int[], String) - Constructor for class mpicbg.imglib.algorithm.roi.StructuringElement
StructuringElement(ImageFactory<BitType>, int[], String) - Constructor for class mpicbg.imglib.algorithm.roi.StructuringElement
sub(int) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
sub(V) - Method in class mpicbg.imglib.cursor.vector.AbstractVector
sub(Vector) - Method in class mpicbg.imglib.cursor.vector.Vector
sub(int) - Method in class mpicbg.imglib.cursor.vector.Vector
sub(Vector1d) - Method in class mpicbg.imglib.cursor.vector.Vector1d
sub(int) - Method in class mpicbg.imglib.cursor.vector.Vector1d
sub(Vector2d) - Method in class mpicbg.imglib.cursor.vector.Vector2d
sub(int) - Method in class mpicbg.imglib.cursor.vector.Vector2d
sub(Vector3d) - Method in class mpicbg.imglib.cursor.vector.Vector3d
sub(int) - Method in class mpicbg.imglib.cursor.vector.Vector3d
sub(Vector4d) - Method in class mpicbg.imglib.cursor.vector.Vector4d
sub(int) - Method in class mpicbg.imglib.cursor.vector.Vector4d
sub(BitType) - Method in class mpicbg.imglib.type.logic.BitType
sub(ComplexFloatType) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
sub(T) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
sub(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
sub(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
sub(T) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
sub(LongType) - Method in class mpicbg.imglib.type.numeric.integer.LongType
sub(T) - Method in interface mpicbg.imglib.type.numeric.NumericType
sub(FloatType) - Method in class mpicbg.imglib.type.numeric.real.FloatType
sub(T) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
sub(RGBALegacyType) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
SubpixelLocalization<T extends RealType<T>> - Class in mpicbg.imglib.algorithm.scalespace: TODO
SubpixelLocalization(Image<T>, List<DifferenceOfGaussianPeak<T>>) - Constructor for class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization
subPixelLocationOffset - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
Subtract - Class in imglib.ops.operator.binary: TODO
Subtract() - Constructor for class imglib.ops.operator.binary.Subtract
Subtract - Class in script.imglib.math: TODO
Subtract(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Subtract
Subtract(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Subtract
Subtract(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Subtract
Subtract(IFunction, IFunction) - Constructor for class script.imglib.math.Subtract
Subtract(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Subtract
Subtract(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Subtract
Subtract(IFunction, Number) - Constructor for class script.imglib.math.Subtract
Subtract(Number, IFunction) - Constructor for class script.imglib.math.Subtract
Subtract(Number, Number) - Constructor for class script.imglib.math.Subtract
Subtract(Object...) - Constructor for class script.imglib.math.Subtract
SubtractConstant - Class in imglib.ops.operator.unary: TODO
SubtractConstant(double) - Constructor for class imglib.ops.operator.unary.SubtractConstant
SubtractNorm<A extends NumericType<A>> - Class in mpicbg.imglib.algorithm.function: TODO
SubtractNorm(A) - Constructor for class mpicbg.imglib.algorithm.function.SubtractNorm
SubtractNormReal<A extends RealType<A>,B extends RealType,C extends RealType<C>> - Class in mpicbg.imglib.algorithm.function: TODO
SubtractNormReal(double) - Constructor for class mpicbg.imglib.algorithm.function.SubtractNormReal
SubtractReal<A extends RealType<A>,B extends RealType,C extends RealType<C>> - Class in mpicbg.imglib.algorithm.function: TODO
SubtractReal() - Constructor for class mpicbg.imglib.algorithm.function.SubtractReal
sumImage(Image<T>) - Static method in class mpicbg.imglib.algorithm.math.NormalizeImageFloat
sumImage(Image<T>) - Static method in class mpicbg.imglib.algorithm.math.NormalizeImageMinMax
sumValue - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
switchRealComplex() - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType

T

Tan - Class in script.imglib.math: TODO
Tan(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Tan
Tan(IFunction) - Constructor for class script.imglib.math.Tan
Tan(Number) - Constructor for class script.imglib.math.Tan
Tanh - Class in script.imglib.math: TODO
Tanh(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Tanh
Tanh(IFunction) - Constructor for class script.imglib.math.Tanh
Tanh(Number) - Constructor for class script.imglib.math.Tanh
testCrossCorrelation(int[], Image<T>, Image<S>) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
testCrossCorrelation(int[], Image<T>, Image<S>, int) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
testCrossCorrelation(int[], Image<T>, Image<S>, int, long[]) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
testCrossCorrelation(int[], Image<T>, Image<S>, int[]) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
testCrossCorrelation(int[], Image<T>, Image<S>, int[], long[]) - Static method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
TestKDTree - Class in mpicbg.imglib.algorithm.kdtree: TODO
TestKDTree() - Constructor for class mpicbg.imglib.algorithm.kdtree.TestKDTree
testNearestNeighbor(int, int, int, float, float) - Static method in class mpicbg.imglib.algorithm.kdtree.TestKDTree
testNNearestNeighbor(int, int, int, int, float, float) - Static method in class mpicbg.imglib.algorithm.kdtree.TestKDTree
testRadiusSearch(int, int, int, float, float) - Static method in class mpicbg.imglib.algorithm.kdtree.TestKDTree
threadHaltUnClean() - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
threadWait(long) - Static method in class mpicbg.imglib.multithreading.SimpleMultiThreading
threshold - Variable in class mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder
TIME - Static variable in class mpicbg.imglib.io.ImageOpener
tmp - Variable in class mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor
tmp - Variable in class mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor
tmp - Variable in class mpicbg.imglib.interpolation.InterpolatorImpl
toArray() - Method in class mpicbg.imglib.image.Image
toArray(E[]) - Method in class mpicbg.imglib.image.Image
ToDegrees - Class in script.imglib.math: TODO
ToDegrees(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ToDegrees
ToDegrees(IFunction) - Constructor for class script.imglib.math.ToDegrees
ToDegrees(Number) - Constructor for class script.imglib.math.ToDegrees
ToRadians - Class in script.imglib.math: TODO
ToRadians(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.ToRadians
ToRadians(IFunction) - Constructor for class script.imglib.math.ToRadians
ToRadians(Number) - Constructor for class script.imglib.math.ToRadians
toString() - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak
toString(Node<T>, String) - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
toString() - Method in class mpicbg.imglib.algorithm.kdtree.KDTree
toString(T) - Method in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
toString(T[], int) - Method in class mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch
toString(Node<T>) - Method in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
toString() - Method in class mpicbg.imglib.algorithm.kdtree.node.NonLeaf
toString() - Method in class mpicbg.imglib.algorithm.kdtree.node.SimpleNode
toString() - Method in class mpicbg.imglib.container.ContainerImpl
toString() - Method in class mpicbg.imglib.cursor.array.ArrayCursor
toString() - Method in class mpicbg.imglib.cursor.array.ArrayLocalizableCursor
toString() - Method in class mpicbg.imglib.cursor.cell.CellCursor
toString() - Method in class mpicbg.imglib.cursor.cell.CellLocalizableCursor
toString() - Method in class mpicbg.imglib.cursor.constant.ConstantLocalizableCursor
toString() - Method in class mpicbg.imglib.cursor.dynamic.DynamicCursor
toString() - Method in class mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor
toString() - Method in class mpicbg.imglib.cursor.planar.PlanarCursor
toString() - Method in class mpicbg.imglib.cursor.planar.PlanarLocalizableCursor
toString() - Method in class mpicbg.imglib.cursor.special.RegionOfInterestCursor
toString() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay
toString() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack
toString() - Method in class mpicbg.imglib.image.Image
toString() - Method in class mpicbg.imglib.labeling.LabelingType
toString() - Method in class mpicbg.imglib.type.label.BasePairBitType
toString() - Method in class mpicbg.imglib.type.label.BasePairCharType
toString() - Method in class mpicbg.imglib.type.label.FakeType
toString() - Method in class mpicbg.imglib.type.logic.BitType
toString() - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
toString() - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
toString() - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
toString() - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
toString() - Method in class mpicbg.imglib.type.numeric.integer.IntegerTypeImpl
toString() - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
toString() - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
toString() - Method in class mpicbg.imglib.type.TypeImpl
transform - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
transformAsBoundable - Variable in class mpicbg.imglib.algorithm.transformation.ImageTransform
trim() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Frees memory by deleting a few slices from the end of the stack.
trim() - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Frees memory by deleting a few slices from the end of the stack.
type - Variable in class mpicbg.imglib.algorithm.integral.IntegralImage
type - Variable in class mpicbg.imglib.cursor.array.ArrayCursor
type - Variable in class mpicbg.imglib.cursor.cell.CellCursor
type - Variable in class mpicbg.imglib.cursor.dynamic.DynamicCursor
type - Variable in class mpicbg.imglib.cursor.planar.PlanarCursor
type - Variable in class mpicbg.imglib.labeling.DefaultLabelingCursorStrategy
Type<T extends Type<T>> - Interface in mpicbg.imglib.type: The Type class is responsible for computing.
TypeConverter - Class in mpicbg.imglib.type: TODO
TypeConverter() - Constructor for class mpicbg.imglib.type.TypeConverter
TypeImpl<T extends TypeImpl<T>> - Class in mpicbg.imglib.type: TODO
TypeImpl() - Constructor for class mpicbg.imglib.type.TypeImpl
typeLists - Variable in class mpicbg.imglib.container.shapelist.ShapeList

U

UnaryOperation - Class in script.imglib.math.fn
UnaryOperation(Image<? extends RealType<?>>) - Constructor for class script.imglib.math.fn.UnaryOperation
UnaryOperation(IFunction) - Constructor for class script.imglib.math.fn.UnaryOperation
UnaryOperation(Number) - Constructor for class script.imglib.math.fn.UnaryOperation
UnaryOperator - Interface in imglib.ops.operator: TODO
UnaryOperatorFunction<T extends RealType<T>> - Class in imglib.ops.function.p1: TODO
UnaryOperatorFunction(UnaryOperator) - Constructor for class imglib.ops.function.p1.UnaryOperatorFunction
unionConditions() - Method in class imglib.ops.operation.AssignOperation
Unsigned12BitType - Class in mpicbg.imglib.type.numeric.integer: TODO
Unsigned12BitType(DirectAccessContainer<Unsigned12BitType, ? extends BitAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
Unsigned12BitType(short) - Constructor for class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
Unsigned12BitType() - Constructor for class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
UnsignedByteType - Class in mpicbg.imglib.type.numeric.integer: TODO
UnsignedByteType(DirectAccessContainer<UnsignedByteType, ? extends ByteAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedByteType
UnsignedByteType(int) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedByteType
UnsignedByteType() - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedByteType
UnsignedIntType - Class in mpicbg.imglib.type.numeric.integer: TODO
UnsignedIntType(DirectAccessContainer<UnsignedIntType, ? extends IntAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedIntType
UnsignedIntType(long) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedIntType
UnsignedIntType() - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedIntType
UnsignedShortType - Class in mpicbg.imglib.type.numeric.integer: TODO
UnsignedShortType(DirectAccessContainer<UnsignedShortType, ? extends ShortAccess>) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedShortType
UnsignedShortType(int) - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedShortType
UnsignedShortType() - Constructor for class mpicbg.imglib.type.numeric.integer.UnsignedShortType
update(Observable, Object) - Method in class imglib.ops.observer.ProgressTracker
update(Cursor<?>) - Method in class mpicbg.imglib.container.array.Array
update(Cursor<?>) - Method in class mpicbg.imglib.container.cell.CellContainer
update(Cursor<?>) - Method in interface mpicbg.imglib.container.DirectAccessContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.BitDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.ByteDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.CharDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.DoubleDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.FloatDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.IntDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.LongDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.dynamic.ShortDynamicContainer
update(Cursor<?>) - Method in class mpicbg.imglib.container.planar.PlanarContainer
update() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor
update() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D
update() - Method in class mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized
update(ImageProcessor) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay: Updates this stack so its attributes, such as min, max, calibration table and color model, are the same as 'ip'.
update(ImageProcessor) - Method in class mpicbg.imglib.image.display.imagej.ImageJVirtualStack: Updates this stack so its attributes, such as min, max, calibration table and color model, are the same as 'ip'.
update(int[]) - Method in class mpicbg.imglib.labeling.BoundingBox: update the minimum and maximum extents with the given coordinates.
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.labeling.LabelingType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.label.BasePairBitType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.label.BasePairCharType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.label.FakeType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.logic.BitType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.complex.ComplexDoubleType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.complex.ComplexFloatType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.integer.GenericByteType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.integer.GenericIntType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.integer.GenericShortType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.integer.LongType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.real.DoubleType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.real.FloatType
updateContainer(Cursor<?>) - Method in class mpicbg.imglib.type.numeric.RGBALegacyType
updateContainer(Cursor<?>) - Method in interface mpicbg.imglib.type.Type: This method is used by the Cursors to update the data current data array of the Type, for example when moving from one Cell to the next.
updateIndex(int) - Method in class mpicbg.imglib.container.dynamic.DynamicContainerAccessor: Called by the DynamicCursors upon movement
updateIndex(int) - Method in class mpicbg.imglib.type.label.BasePairBitType
updateIndex(int) - Method in class mpicbg.imglib.type.numeric.complex.ComplexTypeImpl
updateIndex(int) - Method in class mpicbg.imglib.type.numeric.integer.Unsigned12BitType
updateIndex(int) - Method in class mpicbg.imglib.type.numeric.real.RealTypeImpl
updateIndex(int) - Method in interface mpicbg.imglib.type.Type: Set the array position of the Type.
updateIndex(int) - Method in class mpicbg.imglib.type.TypeImpl
upSample(Image<A>, ImageFactory, Converter<A, B>) - Method in class mpicbg.imglib.algorithm.scalespace.ScaleSpace: Upsamples the image by a factor of 2.
useNIO - Variable in class mpicbg.imglib.container.array.ArrayContainerFactory
useNIO() - Method in class mpicbg.imglib.container.array.ArrayContainerFactory
useOptimizedContainers - Variable in class mpicbg.imglib.container.ContainerFactory
useOptimizedContainers() - Method in class mpicbg.imglib.container.ContainerFactory
useOptimizedContainers() - Method in class mpicbg.imglib.image.ImageFactory
Util - Class in mpicbg.imglib.util: TODO
Util() - Constructor for class mpicbg.imglib.util.Util
Util - Class in script.imglib.math.fn: TODO
Util() - Constructor for class script.imglib.math.fn.Util
Utils - Class in mpicbg.imglib.cursor.special: Util class made of static methods, meant to simplify the writing of special cursors.
Utils() - Constructor for class mpicbg.imglib.cursor.special.Utils

V

val(double[], double[]) - Method in interface mpicbg.imglib.algorithm.peak.FitFunction: Evaluate this function at point x.
val(double[], double[]) - Method in class mpicbg.imglib.algorithm.peak.GaussianMultiDLM
value - Variable in class mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak
value - Variable in class mpicbg.imglib.labeling.LabelingType
ValueGreaterThan<T extends RealType<T>> - Class in imglib.ops.condition: TODO
ValueGreaterThan(double) - Constructor for class imglib.ops.condition.ValueGreaterThan
ValueLessThan<T extends RealType<T>> - Class in imglib.ops.condition: TODO
ValueLessThan(double) - Constructor for class imglib.ops.condition.ValueLessThan
valueOf(String) - Static method in enum imglib.ops.observer.IterationStatus.Message: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.FFTOptimization: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.PreProcessing: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.Rearrangement: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.Precision.PrecisionInteger: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.Precision.PrecisionReal: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian.SpecialPoint: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum mpicbg.imglib.type.label.BasePairBitType.Base: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum script.imglib.algorithm.fn.AbstractAffine3D.Mode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum script.imglib.algorithm.fn.Morph.Shape: Returns the enum constant of this type with the specified name.
values() - Static method in enum imglib.ops.observer.IterationStatus.Message: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.FFTOptimization: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.PreProcessing: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.fft.FourierTransform.Rearrangement: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.Precision.PrecisionInteger: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.Precision.PrecisionReal: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian.SpecialPoint: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum mpicbg.imglib.type.label.BasePairBitType.Base: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum script.imglib.algorithm.fn.AbstractAffine3D.Mode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum script.imglib.algorithm.fn.Morph.Shape: Returns an array containing the constants of this enum type, in the order they are declared.
Vector - Class in mpicbg.imglib.cursor.vector: TODO
Vector(Dimensionality) - Constructor for class mpicbg.imglib.cursor.vector.Vector
Vector(int) - Constructor for class mpicbg.imglib.cursor.vector.Vector
Vector1d - Class in mpicbg.imglib.cursor.vector: TODO
Vector1d(int) - Constructor for class mpicbg.imglib.cursor.vector.Vector1d
Vector2d - Class in mpicbg.imglib.cursor.vector: TODO
Vector2d() - Constructor for class mpicbg.imglib.cursor.vector.Vector2d
Vector3d - Class in mpicbg.imglib.cursor.vector: TODO
Vector3d() - Constructor for class mpicbg.imglib.cursor.vector.Vector3d
Vector4d - Class in mpicbg.imglib.cursor.vector: TODO
Vector4d() - Constructor for class mpicbg.imglib.cursor.vector.Vector4d
verifyWithCrossCorrelation(ArrayList<PhaseCorrelationPeak>, int[], Image<T>, Image<S>) - Method in class mpicbg.imglib.algorithm.fft.PhaseCorrelation
VoidConverter<A extends Type<A>> - Class in mpicbg.imglib.function: TODO
VoidConverter() - Constructor for class mpicbg.imglib.function.VoidConverter

W

wantsToQuantize - Variable in class mpicbg.imglib.algorithm.labeling.GradientWatershed
wasInterrupted() - Method in interface imglib.ops.observer.IterationStatus
Watershed - Class in mpicbg.imglib.algorithm.labeling: Watershed algorithms.
Watershed() - Constructor for class mpicbg.imglib.algorithm.labeling.Watershed
Watershed.PixelIntensity<T extends Comparable<T>> - Class in mpicbg.imglib.algorithm.labeling
WideRegionEnhancer(double) - Constructor for class mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.WideRegionEnhancer
width - Variable in class mpicbg.imglib.container.imageplus.ImagePlusContainer
wrap(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
wrap(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrap(Object) - Static method in class script.imglib.algorithm.fn.AlgorithmUtil: Wraps Image, ColorFunction and IFunction, but not numbers.
wrap(Object) - Static method in class script.imglib.color.fn.ColorFunction
wrap(ImagePlus) - Static method in class script.imglib.ImgLib: Wrap an ImageJ's ImagePlus as an Imglib Image of the appropriate type.
wrap(Image<?>) - Static method in class script.imglib.ImgLib: Wrap an Imglib's Image as an ImageJ's ImagePlus of the appropriate type.
wrap(Object) - Static method in class script.imglib.math.fn.Util
wrapArrayByteToImgLib1(Img<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of ByteType (has to be array) into an ImgLib1 Image
wrapArrayByteToImgLib2(Image<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of ByteType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayDoubleToImgLib1(Img<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of DoubleType (has to be array) into an ImgLib1 Image
wrapArrayDoubleToImgLib2(Image<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of DoubleType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayFloatToImgLib1(Img<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of FloatType (has to be array) into an ImgLib1 Image
wrapArrayFloatToImgLib2(Image<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of FloatType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayIntToImgLib1(Img<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of IntType (has to be array) into an ImgLib1 Image
wrapArrayIntToImgLib2(Image<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of IntType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayLongToImgLib1(Img<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of LongType (has to be array) into an ImgLib1 Image
wrapArrayLongToImgLib2(Image<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of LongType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayShortToImgLib1(Img<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of ShortType (has to be array) into an ImgLib1 Image
wrapArrayShortToImgLib2(Image<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of ShortType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayUnsignedByteToImgLib1(Img<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of UnsignedByteType (has to be array) into an ImgLib1 Image
wrapArrayUnsignedByteToImgLib2(Image<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedByteType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayUnsignedIntToImgLib1(Img<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of UnsignedIntType (has to be array) into an ImgLib1 Image
wrapArrayUnsignedIntToImgLib2(Image<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedIntType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapArrayUnsignedShortToImgLib1(Img<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 ArrayImg of UnsignedShortType (has to be array) into an ImgLib1 Image
wrapArrayUnsignedShortToImgLib2(Image<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedShortType (has to be array) into an ImgLib2 Img using an ArrayImg
wrapByte(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
wrapByte(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrapByteToImgLib1(Img<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of ByteType into an ImgLib1 Image (supports Cell and Array)
wrapByteToImgLib2(Image<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of ByteType into an ImgLib2 Img (supports Cell and Array)
wrapCellByteToImgLib1(Img<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of ByteType (has to be CellImg) into an ImgLib1 Image
wrapCellByteToImgLib2(Image<ByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of ByteType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellDoubleToImgLib1(Img<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of DoubleType (has to be CellImg) into an ImgLib1 Image
wrapCellDoubleToImgLib2(Image<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of DoubleType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellFloatToImgLib1(Img<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of FloatType (has to be CellImg) into an ImgLib1 Image
wrapCellFloatToImgLib2(Image<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of FloatType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellIntToImgLib1(Img<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of IntType (has to be CellImg) into an ImgLib1 Image
wrapCellIntToImgLib2(Image<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of IntType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellLongToImgLib1(Img<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of LongType (has to be CellImg) into an ImgLib1 Image
wrapCellLongToImgLib2(Image<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of LongType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellShortToImgLib1(Img<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of ShortType (has to be CellImg) into an ImgLib1 Image
wrapCellShortToImgLib2(Image<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of ShortType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellUnsignedByteToImgLib1(Img<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of UnsignedByteType (has to be CellImg) into an ImgLib1 Image
wrapCellUnsignedByteToImgLib2(Image<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedByteType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellUnsignedIntToImgLib1(Img<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of UnsignedIntType (has to be CellImg) into an ImgLib1 Image
wrapCellUnsignedIntToImgLib2(Image<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedIntType (has to be cell) into an ImgLib2 Img using a CellImg
wrapCellUnsignedShortToImgLib1(Img<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: wraps an ImgLib2 CellImg of UnsignedShortType (has to be CellImg) into an ImgLib1 Image
wrapCellUnsignedShortToImgLib2(Image<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: wrapArrays an ImgLib1 Image of UnsignedShortType (has to be cell) into an ImgLib2 Img using a CellImg
wrapDoubleToImgLib1(Img<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of DoubleType into an ImgLib1 Image (supports Cell and Array)
wrapDoubleToImgLib2(Image<DoubleType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of DoubleType into an ImgLib2 Img (supports Cell and Array)
wrapFloat(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
wrapFloat(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrapFloatToImgLib1(Img<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of FloatType into an ImgLib1 Image (supports Cell and Array)
wrapFloatToImgLib2(Image<FloatType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of FloatType into an ImgLib2 Img (supports Cell and Array)
wrapIntToImgLib1(Img<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of IntType into an ImgLib1 Image (supports Cell and Array)
wrapIntToImgLib2(Image<IntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of IntType into an ImgLib2 Img (supports Cell and Array)
wrapLocal(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrapLongToImgLib1(Img<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of LongType into an ImgLib1 Image (supports Cell and Array)
wrapLongToImgLib2(Image<LongType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of LongType into an ImgLib2 Img (supports Cell and Array)
wrapRGBA(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
wrapRGBA(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrapS(Object) - Static method in class script.imglib.algorithm.fn.AlgorithmUtil: Wraps Image and IFunction, but not numbers, and not a ColorFunction: considers the image as single-channel.
wrapShort(ImagePlus) - Static method in class mpicbg.imglib.image.display.imagej.ImageJFunctions
wrapShort(ImagePlus) - Static method in class mpicbg.imglib.image.ImagePlusAdapter
wrapShortToImgLib1(Img<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of ShortType into an ImgLib1 Image (supports Cell and Array)
wrapShortToImgLib2(Image<ShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of ShortType into an ImgLib2 Img (supports Cell and Array)
wrapUnsignedByteToImgLib1(Img<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of UnsignedByteType into an ImgLib1 Image (supports Cell and Array)
wrapUnsignedByteToImgLib2(Image<UnsignedByteType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of UnsignedByteType into an ImgLib2 Img (supports Cell and Array)
wrapUnsignedIntToImgLib1(Img<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of UnsignedIntType into an ImgLib1 Image (supports Cell and Array)
wrapUnsignedIntToImgLib2(Image<UnsignedIntType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of UnsignedIntType into an ImgLib2 Img (supports Cell and Array)
wrapUnsignedShortToImgLib1(Img<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib2: Wrap an ImgLib2 Img of UnsignedShortType into an ImgLib1 Image (supports Cell and Array)
wrapUnsignedShortToImgLib2(Image<UnsignedShortType>) - Static method in class mpicbg.imglib.wrapper.ImgLib1: Wrap an ImgLib1 Image of UnsignedShortType into an ImgLib2 Img (supports Cell and Array)

X

x - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
x - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
x - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
X - Static variable in class mpicbg.imglib.io.ImageOpener
Xor - Class in imglib.ops.operator.binary: TODO
Xor() - Constructor for class imglib.ops.operator.binary.Xor
xor(T) - Method in interface mpicbg.imglib.type.BooleanType
xor(BitType) - Method in class mpicbg.imglib.type.logic.BitType
Xor - Class in script.imglib.math: TODO
Xor(Image<? extends RealType<?>>, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Xor
Xor(IFunction, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Xor
Xor(Image<? extends RealType<?>>, IFunction) - Constructor for class script.imglib.math.Xor
Xor(IFunction, IFunction) - Constructor for class script.imglib.math.Xor
Xor(Image<? extends RealType<?>>, Number) - Constructor for class script.imglib.math.Xor
Xor(Number, Image<? extends RealType<?>>) - Constructor for class script.imglib.math.Xor
Xor(IFunction, Number) - Constructor for class script.imglib.math.Xor
Xor(Number, IFunction) - Constructor for class script.imglib.math.Xor
Xor(Number, Number) - Constructor for class script.imglib.math.Xor
Xor(Object...) - Constructor for class script.imglib.math.Xor
XorConstant - Class in imglib.ops.operator.unary: TODO
XorConstant(long) - Constructor for class imglib.ops.operator.unary.XorConstant

Y

y - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
y - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
y - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
Y - Static variable in class mpicbg.imglib.io.ImageOpener

Z

z - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor
z - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor
z - Variable in class mpicbg.imglib.cursor.array.Array3DLocalizableCursor
Z - Static variable in class mpicbg.imglib.io.ImageOpener

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