mpicbg.imglib.container.imageplus

Class ShortImagePlus<T extends Type<T>>

java.lang.Object

mpicbg.imglib.container.ContainerImpl<T>

mpicbg.imglib.container.PixelGridContainerImpl<T>

mpicbg.imglib.container.DirectAccessContainerImpl<T,A>

mpicbg.imglib.container.planar.PlanarContainer<T,A>

mpicbg.imglib.container.imageplus.ImagePlusContainer<T,ShortArray>

mpicbg.imglib.container.imageplus.ShortImagePlus<T>

All Implemented Interfaces:

PlanarAccess<ShortArray>, Container<T>, DirectAccessContainer<T,ShortArray>, PixelGridContainer<T>

public class ShortImagePlus<T extends Type<T>>
extends ImagePlusContainer<T,ShortArray>

ImagePlusContainer for short-stored data. Johannes Schindelin

Author:

Funke, Preibisch, Rueden, Saalfeld, Schindelin, Jan Funke, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld

Field Summary

Fields

Modifier and Type	Field and Description
protected ij.ImagePlus	imp

Fields inherited from class mpicbg.imglib.container.imageplus.ImagePlusContainer

channels, depth, factory, frames, height, width

Fields inherited from class mpicbg.imglib.container.planar.PlanarContainer

mirror, slices

Fields inherited from class mpicbg.imglib.container.DirectAccessContainerImpl

linkedType

Fields inherited from class mpicbg.imglib.container.PixelGridContainerImpl

entitiesPerPixel, numEntities

Fields inherited from class mpicbg.imglib.container.ContainerImpl

dim, id, numDimensions, numPixels

Constructor Summary

Constructors

Constructor and Description
ShortImagePlus(ImagePlusContainerFactory factory, int[] dim, int entitiesPerPixel) Standard constructor as called by default factories.
ShortImagePlus(ij.ImagePlus imp, ImagePlusContainerFactory factory)

Method Summary

Modifier and Type	Method and Description
void	close()
ij.ImagePlus	getImagePlus()
void	setPlane(int no, ShortArray plane) This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)

Methods inherited from class mpicbg.imglib.container.imageplus.ImagePlusContainer

createCursor, createLocalizableByDimCursor, createLocalizableByDimCursor, createLocalizableCursor, createLocalizablePlaneCursor, getChannels, getDepth, getFactory, getFrames, getHeight, getWidth, reduceDimensions, reduceDimensions

Methods inherited from class mpicbg.imglib.container.planar.PlanarContainer

compareStorageContainerCompatibility, getIndex, getPlane, getSlices, update

Methods inherited from class mpicbg.imglib.container.DirectAccessContainerImpl

setLinkedType

Methods inherited from class mpicbg.imglib.container.PixelGridContainerImpl

getNumEntities, getNumEntities, getNumEntitiesPerPixel

Methods inherited from class mpicbg.imglib.container.ContainerImpl

compareStorageContainerDimensions, getDimension, getDimensions, getDimensions, getId, getNumDimensions, getNumPixels, getNumPixels, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mpicbg.imglib.container.PixelGridContainer

getNumEntities, getNumEntitiesPerPixel

Methods inherited from interface mpicbg.imglib.container.Container

compareStorageContainerDimensions, getDimension, getDimensions, getDimensions, getId, getNumDimensions, getNumPixels

Field Detail

imp

protected final ij.ImagePlus imp

Constructor Detail

ShortImagePlus

public ShortImagePlus(ImagePlusContainerFactory factory,
                      int[] dim,
                      int entitiesPerPixel)

Standard constructor as called by default factories. Note that this constructor does not know about the meaning of dimensions > 1, and will use them in the ImagePlus default order x,y,c,z,t. That is, from two dimensions, it will create an x,y image, from three dimensions, an x,y,c image, and from four dimensions, an x,y,c,z image.

Parameters:

factory -

dim -

entitiesPerPixel -

ShortImagePlus

public ShortImagePlus(ij.ImagePlus imp,
                      ImagePlusContainerFactory factory)

Method Detail

setPlane

public void setPlane(int no,
                     ShortArray plane)

This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)

Specified by:

setPlane in interface PlanarAccess<ShortArray>

Overrides:

setPlane in class PlanarContainer<T extends Type<T>,ShortArray>

close

public void close()

Specified by:

close in interface Container<T extends Type<T>>

Overrides:

close in class PlanarContainer<T extends Type<T>,ShortArray>

getImagePlus

public ij.ImagePlus getImagePlus()
                          throws ImgLibException

Overrides:

getImagePlus in class ImagePlusContainer<T extends Type<T>,ShortArray>

Throws:

ImgLibException