Uses of Interface
bdv.viewer.Source

Packages that use Source

Package	Description
bdv
bdv.tools
bdv.tools.boundingbox
bdv.tools.crop
bdv.tools.transformation
bdv.util
bdv.viewer
bdv.viewer.render
bdv.viewer.state

Uses of Source in bdv

Classes in bdv that implement Source

Modifier and Type	Class and Description
class	AbstractSpimSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	SpimSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	VolatileSpimSource<V extends net.imglib2.Volatile<?> & net.imglib2.type.numeric.NumericType<V>>

Uses of Source in bdv.tools

Methods in bdv.tools with parameters of type Source

Modifier and Type	Method and Description
static Bounds	InitializeViewerState.estimateSourceRange(Source<?> source, int timepoint, double cumulativeMinCutoff, double cumulativeMaxCutoff)

Uses of Source in bdv.tools.boundingbox

Method parameters in bdv.tools.boundingbox with type arguments of type Source

Modifier and Type	Method and Description
static net.imglib2.Interval	BoundingBoxUtil.getSourcesBoundingBox(Collection<? extends Source<?>> sources, int minTimepointIndex, int maxTimepointIndex)
static net.imglib2.RealInterval	BoundingBoxUtil.getSourcesBoundingBoxReal(Collection<? extends Source<?>> sources, int minTimepointIndex, int maxTimepointIndex)

Uses of Source in bdv.tools.crop

Methods in bdv.tools.crop with parameters of type Source

Modifier and Type	Method and Description
static <T> net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<T>,net.imglib2.realtransform.AffineTransform3D>	CropImgLoader.crop(net.imglib2.realtransform.AffineTransform3D globalToCropTransform, net.imglib2.RealInterval interval, Source<T> source, int timepoint) Crop a region from a Source.

Constructors in bdv.tools.crop with parameters of type Source

Constructor and Description
SetupImgLoader(Source<T> source)

Constructor parameters in bdv.tools.crop with type arguments of type Source

Constructor and Description
CropImgLoader(ArrayList<Source<?>> sources, net.imglib2.realtransform.AffineTransform3D globalToCropTransform, net.imglib2.RealInterval cropInterval, Map<Integer,Integer> timepointIdToTimepointIndex, Map<Integer,Integer> setupIdToSourceIndex)

Uses of Source in bdv.tools.transformation

Classes in bdv.tools.transformation that implement Source

Modifier and Type	Class and Description
class	TransformedSource<T> A Source that wraps another Source and allows to decorate it with an extra AffineTransform3D.

Fields in bdv.tools.transformation declared as Source

Modifier and Type	Field and Description
protected Source<T>	TransformedSource.source

Methods in bdv.tools.transformation that return Source

Modifier and Type	Method and Description
Source<T>	TransformedSource.getWrappedSource()

Constructors in bdv.tools.transformation with parameters of type Source

Constructor and Description
TransformedSource(Source<T> source) Instantiates a new TransformedSource wrapping the specified source with the identity transform.
TransformedSource(Source<T> source, String name)
TransformedSource(Source<T> source, TransformedSource<?> shareTransform)
TransformedSource(Source<T> source, TransformedSource<?> shareTransform, String name)

Uses of Source in bdv.util

Classes in bdv.util that implement Source

Modifier and Type	Class and Description
class	AbstractSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	PlaceHolderSource A dummy Source that represents a BdvOverlay.
class	RandomAccessibleIntervalMipmapSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	RandomAccessibleIntervalMipmapSource4D<T extends net.imglib2.type.numeric.NumericType<T>>
class	RandomAccessibleIntervalSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	RandomAccessibleIntervalSource4D<T extends net.imglib2.type.numeric.NumericType<T>>
class	RandomAccessibleSource<T extends net.imglib2.type.numeric.NumericType<T>>
class	RandomAccessibleSource4D<T extends net.imglib2.type.numeric.NumericType<T>>
class	RealRandomAccessibleIntervalSource<T extends net.imglib2.type.Type<T>>
class	RealRandomAccessibleSource<T extends net.imglib2.type.Type<T>> A Source wrapping some RealRandomAccessible.
class	VolatileRandomAccessibleIntervalMipmapSource<T extends net.imglib2.type.numeric.NumericType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> Deprecated. use VolatileSource
class	VolatileSource<T extends net.imglib2.type.numeric.NumericType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>

Methods in bdv.util with parameters of type Source

Modifier and Type	Method and Description
static int	MipmapTransforms.getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenTransform, Source<?> source, int timepoint) Get the mipmap level that best matches the given screen scale for the given source.
static double[]	MipmapTransforms.getPixelSourceSize(net.imglib2.realtransform.AffineTransform3D screenTransform, Source<?> source, int timepoint, int mipmapIndex) Compute the size of the backprojected screen pixel in the Source space.
static double	MipmapTransforms.getVoxelScreenSize(net.imglib2.realtransform.AffineTransform3D screenTransform, Source<?> source, int timepoint, int mipmapIndex) Compute the projected voxel size at the given screen transform and mipmap level of a Source.
static <T> BdvStackSource<T>	BdvFunctions.show(Source<T> source)
static <T> BdvStackSource<T>	BdvFunctions.show(Source<T> source, BdvOptions options)
static <T> BdvStackSource<T>	BdvFunctions.show(Source<T> source, int numTimePoints)
static <T> BdvStackSource<T>	BdvFunctions.show(Source<T> source, int numTimePoints, BdvOptions options)

Constructors in bdv.util with parameters of type Source

Constructor and Description
VolatileSource(Source<T> source, Supplier<V> typeSupplier, SharedQueue queue)
VolatileSource(Source<T> source, V type, SharedQueue queue)

Uses of Source in bdv.viewer

Fields in bdv.viewer declared as Source

Modifier and Type	Field and Description
protected Source<T>	SourceAndConverter.spimSource provides image data for all timepoints of one view.

Methods in bdv.viewer that return Source

Modifier and Type	Method and Description
Source<T>	SourceAndConverter.getSpimSource() Get the Source (provides image data for all timepoints of one angle).

Methods in bdv.viewer with parameters of type Source

Modifier and Type	Method and Description
void	ViewerPanel.removeSource(Source<?> source) Deprecated. Modify ViewerPanel.state() directly
void	VisibilityAndGrouping.setCurrentSource(Source<?> source) Deprecated.
void	VisibilityAndGrouping.setSourceActive(Source<?> source, boolean isActive) Deprecated.

Method parameters in bdv.viewer with type arguments of type Source

Modifier and Type	Method and Description
void	ViewerPanel.removeSources(Collection<Source<?>> sources) Deprecated. Modify ViewerPanel.state() directly

Constructors in bdv.viewer with parameters of type Source

Constructor and Description
SourceAndConverter(Source<T> spimSource, net.imglib2.converter.Converter<T,net.imglib2.type.numeric.ARGBType> converter)
SourceAndConverter(Source<T> spimSource, net.imglib2.converter.Converter<T,net.imglib2.type.numeric.ARGBType> converter, SourceAndConverter<? extends net.imglib2.Volatile<T>> volatileSourceAndConverter)

Uses of Source in bdv.viewer.render

Method parameters in bdv.viewer.render with type arguments of type Source

Modifier and Type

Method and Description

default VolatileProjector

AccumulateProjectorFactory.createAccumulateProjector(ArrayList<VolatileProjector> sourceProjectors, ArrayList<Source<?>> sources, ArrayList<? extends net.imglib2.RandomAccessible<? extends A>> sourceScreenImages, net.imglib2.RandomAccessibleInterval<A> targetScreenImage, int numThreads, ExecutorService executorService) Deprecated. Use AccumulateProjectorFactory.createProjector(List, List, List, RandomAccessibleInterval, int, ExecutorService) instead. The new variant of the method is named "createProjector" instead of "createAccumulateProjector" because it has the same erasure. The default implementation of "createProjector" is forwarded to the (deprecated) "createAccumulateProjector", so existing AccumulateProjectorFactory implementations should keep working.

Constructors in bdv.viewer.render with parameters of type Source

Constructor and Description
DefaultMipmapOrdering(Source<?> source)
DefaultMipmapOrdering(Source<?> source, boolean createHints, net.imglib2.cache.volatiles.LoadingStrategy renderLoadingStrategy, boolean renderEnqueuToFront, net.imglib2.cache.volatiles.LoadingStrategy prefetchLoadingStrategy, boolean prefetchEnqueuToFront)

Uses of Source in bdv.viewer.state

Methods in bdv.viewer.state with parameters of type Source

Modifier and Type	Method and Description
int	ViewerState.getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenScaleTransform, Source<?> source) Deprecated. Get the mipmap level that best matches the given screen scale for the given source.
void	ViewerState.removeSource(Source<?> source) Deprecated.
void	ViewerState.setCurrentSource(Source<?> source) Deprecated. Make the given source current.