bdv.util

Class RealRandomAccessibleIntervalSource<T extends net.imglib2.type.Type<T>>

java.lang.Object

bdv.util.RealRandomAccessibleSource<T>

bdv.util.RealRandomAccessibleIntervalSource<T>

All Implemented Interfaces:

Source<T>

public class RealRandomAccessibleIntervalSource<T extends net.imglib2.type.Type<T>>
extends RealRandomAccessibleSource<T>

Field Summary

Fields inherited from class bdv.util.RealRandomAccessibleSource

accessible, doBoundingBoxIntersectionCheck, name, type, voxelDimensions

Constructor Summary

Constructors

Constructor and Description
RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible, net.imglib2.Interval interval, T type, net.imglib2.realtransform.AffineTransform3D sourceTransform, String name)
RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible, net.imglib2.Interval interval, T type, net.imglib2.realtransform.AffineTransform3D sourceTransform, String name, boolean doBoundingBoxIntersectionCheck)
RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible, net.imglib2.Interval interval, T type, String name)

Method Summary

Modifier and Type	Method and Description
net.imglib2.Interval	getInterval(int t, int level) Return the interval which should be used to bound the wrapped (unbounded) RealRandomAccessible for RealRandomAccessibleSource.getSource(int, int).
void	getSourceTransform(int t, int level, net.imglib2.realtransform.AffineTransform3D transform) Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Methods inherited from class bdv.util.RealRandomAccessibleSource

doBoundingBoxCulling, getInterpolatedMaskedSource, getInterpolatedSource, getMaskedSource, getName, getNumMipmapLevels, getSource, getType, getVoxelDimensions, isPresent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RealRandomAccessibleIntervalSource

public RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible,
                                          net.imglib2.Interval interval,
                                          T type,
                                          String name)

RealRandomAccessibleIntervalSource

public RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible,
                                          net.imglib2.Interval interval,
                                          T type,
                                          net.imglib2.realtransform.AffineTransform3D sourceTransform,
                                          String name)

RealRandomAccessibleIntervalSource

public RealRandomAccessibleIntervalSource(net.imglib2.RealRandomAccessible<T> accessible,
                                          net.imglib2.Interval interval,
                                          T type,
                                          net.imglib2.realtransform.AffineTransform3D sourceTransform,
                                          String name,
                                          boolean doBoundingBoxIntersectionCheck)

Method Detail

getSourceTransform

public void getSourceTransform(int t,
                               int level,
                               net.imglib2.realtransform.AffineTransform3D transform)

Description copied from interface: Source

Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Specified by:

getSourceTransform in interface Source<T extends net.imglib2.type.Type<T>>

Overrides:

getSourceTransform in class RealRandomAccessibleSource<T extends net.imglib2.type.Type<T>>

Parameters:

t - timepoint index

level - mipmap level

transform - is set to the source-to-global transform, that transforms source coordinates into the global coordinates

getInterval

public net.imglib2.Interval getInterval(int t,
                                        int level)

Description copied from class: RealRandomAccessibleSource

Return the interval which should be used to bound the wrapped (unbounded) RealRandomAccessible for RealRandomAccessibleSource.getSource(int, int).

Specified by:

getInterval in class RealRandomAccessibleSource<T extends net.imglib2.type.Type<T>>

Returns:

image interval