bdv.util

Class RandomAccessibleIntervalMipmapSource<T extends net.imglib2.type.numeric.NumericType<T>>

java.lang.Object

bdv.util.AbstractSource<T>

bdv.util.RandomAccessibleIntervalMipmapSource<T>

All Implemented Interfaces:

Source<T>

public class RandomAccessibleIntervalMipmapSource<T extends net.imglib2.type.numeric.NumericType<T>>
extends AbstractSource<T>

Field Summary

Fields

Modifier and Type	Field and Description
protected net.imglib2.RandomAccessibleInterval<T>[]	mipmapSources
protected net.imglib2.realtransform.AffineTransform3D[]	mipmapTransforms

Fields inherited from class bdv.util.AbstractSource

interpolators, name, type, voxelDimensions

Constructor Summary

Constructors

Constructor and Description
RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs, T type, net.imglib2.realtransform.AffineTransform3D[] mipmapTransforms, mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions, String name, boolean doBoundingBoxCulling)
RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs, T type, double[][] mipmapScales, mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions, net.imglib2.realtransform.AffineTransform3D sourceTransform, String name)
RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs, T type, double[][] mipmapScales, mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions, net.imglib2.realtransform.AffineTransform3D sourceTransform, String name, boolean doBoundingBoxCulling)
RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs, T type, double[][] mipmapScales, mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions, String name)

Method Summary

Modifier and Type	Method and Description
<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V>	asVolatile(SharedQueue queue)
<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V>	asVolatile(Supplier<V> vTypeSupplier, SharedQueue queue)
<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V>	asVolatile(V vType, SharedQueue queue)
int	getNumMipmapLevels()
net.imglib2.RandomAccessibleInterval<T>	getSource(int t, int level) Get the 3D stack at timepoint index t.
void	getSourceTransform(int t, int level, net.imglib2.realtransform.AffineTransform3D transform) Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Methods inherited from class bdv.util.AbstractSource

doBoundingBoxCulling, getInterpolatedMaskedSource, getInterpolatedSource, getMaskedSource, getName, getType, getVoxelDimensions, isPresent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mipmapSources

protected final net.imglib2.RandomAccessibleInterval<T extends net.imglib2.type.numeric.NumericType<T>>[] mipmapSources

mipmapTransforms

protected final net.imglib2.realtransform.AffineTransform3D[] mipmapTransforms

Constructor Detail

RandomAccessibleIntervalMipmapSource

public RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs,
                                            T type,
                                            net.imglib2.realtransform.AffineTransform3D[] mipmapTransforms,
                                            mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions,
                                            String name,
                                            boolean doBoundingBoxCulling)

RandomAccessibleIntervalMipmapSource

public RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs,
                                            T type,
                                            double[][] mipmapScales,
                                            mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions,
                                            net.imglib2.realtransform.AffineTransform3D sourceTransform,
                                            String name,
                                            boolean doBoundingBoxCulling)

RandomAccessibleIntervalMipmapSource

public RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs,
                                            T type,
                                            double[][] mipmapScales,
                                            mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions,
                                            net.imglib2.realtransform.AffineTransform3D sourceTransform,
                                            String name)

RandomAccessibleIntervalMipmapSource

public RandomAccessibleIntervalMipmapSource(net.imglib2.RandomAccessibleInterval<T>[] imgs,
                                            T type,
                                            double[][] mipmapScales,
                                            mpicbg.spim.data.sequence.VoxelDimensions voxelDimensions,
                                            String name)

Method Detail

getSource

public net.imglib2.RandomAccessibleInterval<T> getSource(int t,
                                                         int level)

Description copied from interface: Source

Get the 3D stack at timepoint index t.

Parameters:

t - timepoint index

level - mipmap level

Returns:

the stack.

getSourceTransform

public void getSourceTransform(int t,
                               int level,
                               net.imglib2.realtransform.AffineTransform3D transform)

Description copied from interface: Source

Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Parameters:

t - timepoint index

level - mipmap level

transform - is set to the source-to-global transform, that transforms source coordinates into the global coordinates

getNumMipmapLevels

public int getNumMipmapLevels()

Specified by:

getNumMipmapLevels in interface Source<T extends net.imglib2.type.numeric.NumericType<T>>

Overrides:

getNumMipmapLevels in class AbstractSource<T extends net.imglib2.type.numeric.NumericType<T>>

asVolatile

public <V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V> asVolatile(V vType,
                                                                                                                                                  SharedQueue queue)

asVolatile

public <V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V> asVolatile(Supplier<V> vTypeSupplier,
                                                                                                                                                  SharedQueue queue)

asVolatile

public <V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>> VolatileRandomAccessibleIntervalMipmapSource<T,V> asVolatile(SharedQueue queue)