bdv.util

Class VolatileSource<T extends net.imglib2.type.numeric.NumericType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>

java.lang.Object

bdv.util.AbstractSource<V>

bdv.util.VolatileSource<T,V>

All Implemented Interfaces:

Source<V>

Direct Known Subclasses:

VolatileRandomAccessibleIntervalMipmapSource

public class VolatileSource<T extends net.imglib2.type.numeric.NumericType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>
extends AbstractSource<V>

Field Summary

Fields inherited from class bdv.util.AbstractSource

interpolators, name, type, voxelDimensions

Constructor Summary

Constructors

Constructor and Description
VolatileSource(Source<T> source, Supplier<V> typeSupplier, SharedQueue queue)
VolatileSource(Source<T> source, V type, SharedQueue queue)

Method Summary

Modifier and Type	Method and Description
int	getNumMipmapLevels()
net.imglib2.RandomAccessibleInterval<V>	getSource(int t, int level) Get the 3D stack at timepoint index t.
void	getSourceTransform(int t, int level, net.imglib2.realtransform.AffineTransform3D transform) Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.
mpicbg.spim.data.sequence.VoxelDimensions	getVoxelDimensions() Get voxel size and unit for this source.

Methods inherited from class bdv.util.AbstractSource

doBoundingBoxCulling, getInterpolatedMaskedSource, getInterpolatedSource, getMaskedSource, getName, getType, isPresent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VolatileSource

public VolatileSource(Source<T> source,
                      V type,
                      SharedQueue queue)

VolatileSource

public VolatileSource(Source<T> source,
                      Supplier<V> typeSupplier,
                      SharedQueue queue)

Method Detail

getSource

public net.imglib2.RandomAccessibleInterval<V> getSource(int t,
                                                         int level)

Description copied from interface: Source

Get the 3D stack at timepoint index t.

Parameters:

t - timepoint index

level - mipmap level

Returns:

the stack.

getSourceTransform

public void getSourceTransform(int t,
                               int level,
                               net.imglib2.realtransform.AffineTransform3D transform)

Description copied from interface: Source

Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Parameters:

t - timepoint index

level - mipmap level

transform - is set to the source-to-global transform, that transforms source coordinates into the global coordinates

getVoxelDimensions

public mpicbg.spim.data.sequence.VoxelDimensions getVoxelDimensions()

Description copied from interface: Source

Get voxel size and unit for this source. May return null.

Specified by:

getVoxelDimensions in interface Source<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>

Overrides:

getVoxelDimensions in class AbstractSource<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>

Returns:

voxel size and unit or null.

getNumMipmapLevels

public int getNumMipmapLevels()

Specified by:

getNumMipmapLevels in interface Source<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>

Overrides:

getNumMipmapLevels in class AbstractSource<V extends net.imglib2.Volatile<T> & net.imglib2.type.numeric.NumericType<V>>