bdv.util

Class BdvOverlay

java.lang.Object

bdv.util.BdvOverlay

All Implemented Interfaces:

OverlayRenderer

Direct Known Subclasses:

PointsOverlay

public abstract class BdvOverlay
extends Object
implements OverlayRenderer

An overlay that can be shown with BdvFunctions.showOverlay(BdvOverlay, String, BdvOptions): This method will add a dummy Source and ConverterSetup to the BigDataViewer such that the visibility, display range, and color for the overlay can be adjusted by the user, like for a normal Source.

Derived classes need to implement draw(Graphics2D). They can access the current viewer transform using getCurrentTransform2D(AffineTransform2D), getCurrentTransform3D(AffineTransform3D). They can access the user-set display range and color via info.

Author:

Tobias Pietzsch

Field Summary

Fields

Modifier and Type	Field and Description
protected PlaceHolderOverlayInfo	info
protected net.imglib2.realtransform.AffineTransform3D	sourceTransform

Constructor Summary

Constructors

Constructor and Description
BdvOverlay()

Method Summary

Modifier and Type	Method and Description
protected abstract void	draw(Graphics2D g)
void	drawOverlays(Graphics g) Render overlays.
protected void	getCurrentTransform2D(net.imglib2.realtransform.AffineTransform2D transform) Can be used by derived classes in the draw(Graphics2D) method to get the current transform from 2D source coordinates to screen coordinates.
protected void	getCurrentTransform3D(net.imglib2.realtransform.AffineTransform3D transform) Can be used by derived classes in the draw(Graphics2D) method to get the current transform from 3D source coordinates to 3D screen coordinates (where Z coordinate is distance from the slice shown on the screen).
void	setCanvasSize(int width, int height) This is called, when the screen size of the canvas (the component displaying the image and generating mouse events) changes.
void	setOverlayInfo(PlaceHolderOverlayInfo info)
void	setSourceTransform(net.imglib2.realtransform.AffineTransform3D t)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

sourceTransform

protected final net.imglib2.realtransform.AffineTransform3D sourceTransform

info

protected PlaceHolderOverlayInfo info

Constructor Detail

BdvOverlay

public BdvOverlay()

Method Detail

setOverlayInfo

public void setOverlayInfo(PlaceHolderOverlayInfo info)

setSourceTransform

public void setSourceTransform(net.imglib2.realtransform.AffineTransform3D t)

drawOverlays

public void drawOverlays(Graphics g)

Description copied from interface: OverlayRenderer

Render overlays.

Specified by:

drawOverlays in interface OverlayRenderer

getCurrentTransform2D

protected void getCurrentTransform2D(net.imglib2.realtransform.AffineTransform2D transform)

Can be used by derived classes in the draw(Graphics2D) method to get the current transform from 2D source coordinates to screen coordinates.

Parameters:

transform -

getCurrentTransform3D

protected void getCurrentTransform3D(net.imglib2.realtransform.AffineTransform3D transform)

Can be used by derived classes in the draw(Graphics2D) method to get the current transform from 3D source coordinates to 3D screen coordinates (where Z coordinate is distance from the slice shown on the screen).

Parameters:

transform -

draw

protected abstract void draw(Graphics2D g)

setCanvasSize

public void setCanvasSize(int width,
                          int height)

Description copied from interface: OverlayRenderer

This is called, when the screen size of the canvas (the component displaying the image and generating mouse events) changes. This can be used to determine scale of overlay or screen coordinates relative to the border.

Specified by:

setCanvasSize in interface OverlayRenderer

Parameters:

width - the new canvas width.

height - the new canvas height.