bdv.viewer.state

Class ViewerState

java.lang.Object

bdv.viewer.state.ViewerState

Deprecated.

@Deprecated
public class ViewerState
extends Object

Description of everything required to render the current image, such as the current timepoint, the visible and current sources and groups respectively, the viewer transformation, etc.

Author:

Tobias Pietzsch

Constructor Summary

Constructors

Modifier	Constructor and Description
	ViewerState(List<SourceAndConverter<?>> sources, int numTimePoints) Deprecated.
	ViewerState(List<SourceAndConverter<?>> sources, List<SourceGroup> sourceGroups, int numTimePoints) Deprecated.
	ViewerState(SynchronizedViewerState state) Deprecated.
protected	ViewerState(ViewerState s) Deprecated. copy constructor

Method Summary

Modifier and Type	Method and Description
void	addGroup(SourceGroup group) Deprecated.
void	addSource(SourceAndConverter<?> source) Deprecated.
ViewerState	copy() Deprecated.
int	getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenScaleTransform, int sourceIndex) Deprecated. Get the mipmap level that best matches the given screen scale for the given source.
int	getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenScaleTransform, Source<?> source) Deprecated. Get the mipmap level that best matches the given screen scale for the given source.
int	getCurrentGroup() Deprecated. Get the index of the current group.
int	getCurrentSource() Deprecated. Get the index of the current source.
int	getCurrentTimepoint() Deprecated. Get the timepoint index that is currently displayed.
DisplayMode	getDisplayMode() Deprecated. Get the current DisplayMode.
Interpolation	getInterpolation() Deprecated. Get the interpolation method.
int	getNumTimepoints() Deprecated. Get the number of timepoints.
List<SourceGroup>	getSourceGroups() Deprecated. Returns a list of all source groups.
List<SourceState<?>>	getSources() Deprecated. Returns a list of all sources.
SynchronizedViewerState	getState() Deprecated.
void	getViewerTransform(net.imglib2.realtransform.AffineTransform3D t) Deprecated. Get the viewer transform.
List<Integer>	getVisibleSourceIndices() Deprecated. Returns a list of the indices of all currently visible sources.
boolean	isSingleSourceMode() Deprecated. replaced by getDisplayMode()
boolean	isSourceVisible(int index) Deprecated.
void	kill() Deprecated. DON'T USE THIS.
int	numSourceGroups() Deprecated. Returns the number of source groups.
int	numSources() Deprecated. Returns the number of sources.
protected void	removeGroup(int index) Deprecated.
void	removeGroup(SourceGroup group) Deprecated.
protected void	removeSource(int index) Deprecated.
void	removeSource(Source<?> source) Deprecated.
void	setCurrentGroup(int index) Deprecated. Make the group with the given index current.
void	setCurrentGroup(SourceGroup group) Deprecated. Make the given group current.
void	setCurrentSource(int index) Deprecated. Make the source with the given index current.
void	setCurrentSource(Source<?> source) Deprecated. Make the given source current.
void	setCurrentTimepoint(int timepoint) Deprecated. Set the current timepoint index.
void	setDisplayMode(DisplayMode mode) Deprecated. Set the DisplayMode.
void	setInterpolation(Interpolation method) Deprecated. Set the interpolation method.
void	setNumTimepoints(int numTimepoints) Deprecated. Set the number of timepoints.
void	setSingleSourceMode(boolean singleSourceMode) Deprecated. replaced by setDisplayMode(DisplayMode)
void	setViewerTransform(net.imglib2.realtransform.AffineTransform3D t) Deprecated. Set the viewer transform.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ViewerState

public ViewerState(List<SourceAndConverter<?>> sources,
                   int numTimePoints)

Deprecated.

ViewerState

public ViewerState(List<SourceAndConverter<?>> sources,
                   List<SourceGroup> sourceGroups,
                   int numTimePoints)

Deprecated.

Parameters:

sources - the sources to display.

numTimePoints - number of available timepoints.

ViewerState

public ViewerState(SynchronizedViewerState state)

Deprecated.

ViewerState

protected ViewerState(ViewerState s)

Deprecated.

copy constructor

Parameters:

s -

Method Detail

getState

public SynchronizedViewerState getState()

Deprecated.

copy

public ViewerState copy()

Deprecated.

getViewerTransform

public void getViewerTransform(net.imglib2.realtransform.AffineTransform3D t)

Deprecated.

Get the viewer transform.

Parameters:

t - is set to the viewer transform.

setViewerTransform

public void setViewerTransform(net.imglib2.realtransform.AffineTransform3D t)

Deprecated.

Set the viewer transform.

Parameters:

t - transform parameters.

getCurrentSource

public int getCurrentSource()

Deprecated.

Get the index of the current source.

setCurrentSource

public void setCurrentSource(int index)

Deprecated.

Make the source with the given index current.

setCurrentSource

public void setCurrentSource(Source<?> source)

Deprecated.

Make the given source current.

getCurrentGroup

public int getCurrentGroup()

Deprecated.

Get the index of the current group.

setCurrentGroup

public void setCurrentGroup(int index)

Deprecated.

Make the group with the given index current.

setCurrentGroup

public void setCurrentGroup(SourceGroup group)

Deprecated.

Make the given group current.

getInterpolation

public Interpolation getInterpolation()

Deprecated.

Get the interpolation method.

Returns:

interpolation method.

setInterpolation

public void setInterpolation(Interpolation method)

Deprecated.

Set the interpolation method.

Parameters:

method - interpolation method.

isSingleSourceMode

@Deprecated
public boolean isSingleSourceMode()

Deprecated. replaced by getDisplayMode()

Is the display mode single-source? In single-source mode, only the current source (SPIM angle). Otherwise, in fused mode, all active sources are blended.

Returns:

whether the display mode is single-source.

setSingleSourceMode

@Deprecated
public void setSingleSourceMode(boolean singleSourceMode)

Deprecated. replaced by setDisplayMode(DisplayMode)

Set the display mode to single-source (true) or fused (false). In single-source mode, only the current source (SPIM angle) is shown. In fused mode, all active sources are blended.

Parameters:

singleSourceMode - If true, set single-source mode. If false, set fused mode.

setDisplayMode

public void setDisplayMode(DisplayMode mode)

Deprecated.

Set the DisplayMode.

• In single-source mode, only the current source (SPIM angle) is shown.
• In fused mode, all active sources are blended.
• In single-group mode, all sources of the current group are blended.
• In fused group mode, all sources of all active groups are blended.

Parameters:

mode - the display mode

getDisplayMode

public DisplayMode getDisplayMode()

Deprecated.

Get the current DisplayMode.

• In single-source mode, only the current source (SPIM angle) is shown.
• In fused mode, all active sources are blended.
• In single-group mode, all sources of the current group are blended.
• In fused group mode, all sources of all active groups are blended.

Returns:

the current display mode

getCurrentTimepoint

public int getCurrentTimepoint()

Deprecated.

Get the timepoint index that is currently displayed.

Returns:

current timepoint index

setCurrentTimepoint

public void setCurrentTimepoint(int timepoint)

Deprecated.

Set the current timepoint index.

Parameters:

timepoint - timepoint index.

getSources

public List<SourceState<?>> getSources()

Deprecated.

Returns a list of all sources.

Returns:

list of all sources.

numSources

public int numSources()

Deprecated.

Returns the number of sources.

Returns:

number of sources.

getSourceGroups

public List<SourceGroup> getSourceGroups()

Deprecated.

Returns a list of all source groups.

Returns:

list of all source groups.

numSourceGroups

public int numSourceGroups()

Deprecated.

Returns the number of source groups.

Returns:

number of source groups.

addSource

public void addSource(SourceAndConverter<?> source)

Deprecated.

removeSource

public void removeSource(Source<?> source)

Deprecated.

removeSource

protected void removeSource(int index)

Deprecated.

addGroup

public void addGroup(SourceGroup group)

Deprecated.

removeGroup

public void removeGroup(SourceGroup group)

Deprecated.

removeGroup

protected void removeGroup(int index)

Deprecated.

isSourceVisible

public boolean isSourceVisible(int index)

Deprecated.

getVisibleSourceIndices

public List<Integer> getVisibleSourceIndices()

Deprecated.

Returns a list of the indices of all currently visible sources.

Returns:

indices of all currently visible sources.

getBestMipMapLevel

public int getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenScaleTransform,
                              int sourceIndex)

Deprecated.

Get the mipmap level that best matches the given screen scale for the given source.

Parameters:

screenScaleTransform - screen scale, transforms screen coordinates to viewer coordinates.

Returns:

mipmap level

getBestMipMapLevel

public int getBestMipMapLevel(net.imglib2.realtransform.AffineTransform3D screenScaleTransform,
                              Source<?> source)

Deprecated.

Get the mipmap level that best matches the given screen scale for the given source.

Parameters:

screenScaleTransform - screen scale, transforms screen coordinates to viewer coordinates.

Returns:

mipmap level

getNumTimepoints

public int getNumTimepoints()

Deprecated.

Get the number of timepoints.

Returns:

the number of timepoints.

setNumTimepoints

public void setNumTimepoints(int numTimepoints)

Deprecated.

Set the number of timepoints.

Parameters:

numTimepoints - the number of timepoints.

kill

public void kill()

Deprecated.

DON'T USE THIS.

This is a work around for JDK bug https://bugs.openjdk.java.net/browse/JDK-8029147 which leads to ViewerPanel not being garbage-collected when ViewerFrame is closed. So instead we need to manually let go of resources...