Hierarchy For All Packages

Package Hierarchies:

• adt,
• amira,
• client,
• color,
• delaunay,
• distance,
• events,
• features,
• gui,
• inference,
• landmarks,
• leica,
• math3d,
• nrrd,
• oldsegmenters,
• process3d,
• stacks,
• util,
• util.opencsv,
• vib,
• vib.app,
• vib.app.gui,
• vib.app.module,
• vib.edge,
• vib.oldregistration,
• vib.segment,
• vib.transforms,
• video

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • vib.app.FileGroup
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • delaunay.Simplex (implements java.util.Set<E>)
  • landmarks.AffineFromLandmarks.CandidateAffine (implements pal.math.MultivariateFunction)
  • amira.AmiraMeshDecoder
  • amira.AmiraMeshEncoder
  • amira.AmiraParameters
  • amira.AmiraParameters.Material
  • amira.AmiraTableEncoder
  • client.ArchiveClient
  • util.Arrow
  • oldsegmenters.AutoLabeller
    • oldsegmenters.AutoLabellerNaive
  • oldsegmenters.AutoLabeller.LabelStats (implements java.lang.Comparable<T>)
  • util.BatchOpener
  • util.BatchOpener.ChannelsAndLoader
  • inference.BEPBInference
    • inference.BEPBBinBoundariesInference (implements inference.InferenceCaller)
    • inference.BEPBModelInference (implements inference.InferenceCaller)
  • vib.BilateralFilter
  • vib.BinaryInterpolator
  • math3d.Bookstein
    • vib.transforms.BooksteinTransform (implements vib.transforms.Transform)
  • math3d.Bookstein.Bookstein1d
  • vib.segment.Border (implements java.lang.Cloneable)
  • vib.transforms.BoundsInclusive
  • util.Bresenham3D
  • util.Bresenham3D.IntegerPoint
  • adt.ByteProbability
  • color.CIELAB
  • vib.edge.CircleIterators
  • util.CMTKTransformation
  • util.CMTKTransformation.Inverse
  • util.CombinationGenerator
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • vib.segment.ImageButton (implements java.awt.event.MouseListener)
      • ij.gui.ImageCanvas (implements java.lang.Cloneable, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • landmarks.ProgressCanvas
        • vib.SegmentationViewerCanvas
          • vib.segment.CustomCanvas
        • features.SigmaPalette.PaletteCanvas
        • stacks.ThreePanesCanvas
          • stacks.ThreePaneCropCanvas
    • java.awt.Container
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • vib.app.gui.FileGroupDialog (implements java.awt.event.ActionListener, java.awt.dnd.DropTargetListener)
        • vib.segment.InfoPanel
        • vib.segment.Sidebar (implements vib.segment.CustomCanvas.CanvasListener, java.awt.event.ItemListener)
      • java.awt.ScrollPane (implements javax.accessibility.Accessible)
        • vib.segment.MaterialList (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • util.ModelessQuestions (implements java.awt.event.ActionListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • ij.gui.ImageWindow (implements java.awt.event.FocusListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
            • vib.ShowHistogram (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, ij.measure.Measurements)
            • ij.gui.StackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseWheelListener, java.lang.Runnable)
              • vib.segment.CustomStackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
              • landmarks.ProgressWindow (implements java.awt.event.ActionListener)
              • features.SigmaPalette.PaletteStackWindow
              • stacks.ThreePaneContainer (implements java.awt.event.ActionListener, stacks.PaneOwner)
          • ij.text.TextWindow (implements java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener)
            • amira.AmiraTable
  • features.ComputeCurvatures (implements java.lang.Runnable)
  • features.ComputeCurvatures.FloatArray
    • features.ComputeCurvatures.FloatArray2D
    • features.ComputeCurvatures.FloatArray3D
  • adt.Connectivity2D
  • vib.app.gui.Console
  • process3d.Convolve3d
  • distance.Correlation (implements distance.PixelPairs)
  • util.opencsv.CSVReader
  • util.opencsv.CSVWriter
  • vib.DiffusionInterpol2
  • process3d.DistanceTransform3D
  • math3d.Eigensystem2x2Double
  • math3d.Eigensystem2x2Float
  • math3d.Eigensystem3x3Double
  • math3d.Eigensystem3x3Float
  • vib.ElasticTransformedImage
  • distance.Euclidean (implements distance.PixelPairs)
  • vib.FastMatrix
    • vib.transforms.FastMatrixTransform (implements vib.transforms.Transform)
  • math3d.FastMatrixN
  • util.FileAndChannel
  • util.FileCreation
  • util.FindConnectedRegions
  • util.FindConnectedRegions.PointState
  • util.FindConnectedRegions.Region (implements java.lang.Comparable<T>)
  • util.FindConnectedRegions.Results
  • process3d.FindMinima
  • vib.FloatMatrix
  • math3d.FloatMatrixN
  • process3d.Gradient
  • gui.GuiBuilder
  • features.HessianEvalueProcessor (implements features.GaussianGenerationCallback)
    • features.SurfacenessProcessor
    • features.TubenessProcessor
  • util.ImageCalculatorRevised (implements ij.plugin.PlugIn)
  • vib.app.ImageMetaData
  • vib.app.ImageMetaData.Material
  • vib.app.ImageMetaData.Transformation
  • ij.ImagePlus (implements java.lang.Cloneable, java.awt.image.ImageObserver, ij.measure.Measurements)
    • leica.LeicaSPReader
  • inference.Inference
    • inference.BinBoundariesComputation (implements inference.InferenceCaller)
      • inference.BinBoundariesInference (implements inference.InferenceCaller)
      • inference.BinClassificationInference (implements inference.InferenceCaller)
    • inference.DistributionInference (implements inference.InferenceCaller)
    • inference.ModelInference (implements inference.InferenceCaller)
  • vib.InterpolatedImage
  • vib.InterpolatedImage.Iterator (implements java.util.Iterator<E>)
  • vib.InterpolatedImage.NearestNeighbourByte (implements vib.InterpolatedImage.Interpolate)
  • math3d.JacobiDouble
  • math3d.JacobiFloat
  • oldsegmenters.LabelBinaryOps (implements ij.plugin.filter.PlugInFilter)
  • util.Limits
  • math3d.Line
  • inference.LogFuncs
  • inference.MAPInference
  • vib.MaxEntHistogram
  • process3d.MinMaxMedian
  • util.ModelessQuestions.QuestionComponent
  • vib.app.module.Module
    • vib.app.module.AverageBrain
    • vib.app.module.CenterTransformation
    • vib.app.module.EndModule
    • vib.app.module.GreyTransformation
    • vib.app.module.Label
    • vib.app.module.LabelCenterTransformation
    • vib.app.module.LabelDiffusionTransformation
    • vib.app.module.Resample
    • vib.app.module.ResampleLabels
    • vib.app.module.Show
    • vib.app.module.SplitChannels
    • vib.app.module.TissueStatistics
    • vib.app.module.TransformImages
  • distance.MutualInformation (implements distance.PixelPairs)
  • vib.NaiveResampler
  • vib.NaiveResampler.Averager
  • vib.NaiveResampler.IntAverager
  • vib.NaiveResampler.MaxLikelihood
  • vib.NaiveResampler.MinEntropy
  • landmarks.NamedPointSet
  • landmarks.NamedPointWorld
  • landmarks.NamePoints (implements landmarks.FineTuneProgressListener)
  • math3d.NormalEstimator
  • nrrd.NrrdHeader
  • nrrd.NrrdInfo
  • vib.app.Options
  • vib.transforms.OrderedTransformations
  • util.OverlayRegistered
  • util.Penalty
  • adt.PixelStats
  • math3d.Plane
  • delaunay.Pnt
  • math3d.Point3d
    • vib.BenesNamedPoint
  • vib.PointList (implements java.lang.Iterable<T>)
  • adt.Points
  • vib.app.gui.ProgressIndicator (implements vib.app.module.ModuleListener)
  • process3d.Rebin
  • vib.oldregistration.RegistrationAlgorithm
    • landmarks.AffineFromLandmarks
    • landmarks.BooksteinFromLandmarks
    • landmarks.RigidFromLandmarks
  • vib.oldregistration.RegistrationAlgorithm.ImagePoint
  • vib.RegistrationOptimizer
  • landmarks.RegistrationResult (implements java.lang.Comparable<T>)
  • util.RGBToLuminance
  • vib.RigidRegistration
  • util.RohlfingSBA (implements ij.plugin.PlugIn)
  • events.RoiEvent
  • events.RoiWatcher
  • vib.segment.SegmentationEditor (implements ij.plugin.PlugIn)
  • oldsegmenters.SegmentatorModel
  • events.SliceEvent
  • events.SliceWatcher
  • process3d.Smooth
  • adt.Sparse3DByteArray (implements adt.Byte3DArray)
  • vib.edge.SphereIterators
  • vib.app.module.State
  • util.StupidLog
  • math3d.Tetrahedron
  • java.lang.Thread (implements java.lang.Runnable)
    • landmarks.FineTuneThread
    • features.SigmaPalette
  • stacks.ThreePanes (implements stacks.PaneOwner)
    • stacks.ThreePaneCrop
  • vib.transforms.Threshold
  • distance.Thresholded (implements distance.PixelPairs)
  • vib.segment.Thresholder
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • util.BatchOpener.ImageLoaderException
      • util.BatchOpener.NoSuchChannelException
      • landmarks.NamedPointSet.PointsFileException
  • vib.app.module.TissueStatistics.Statistics
  • landmarks.TransformationAttempt (implements pal.math.MultivariateFunction)
  • vib.TransformedImage
  • vib.TransformedImage.Iterator (implements java.util.Iterator<E>)
  • math3d.TransformIO
  • math3d.Triangle
  • delaunay.Triangulation
    • delaunay.DelaunayTriangulation
  • distance.TwoValues (implements distance.PixelPairs)
  • adt.Unsparse3DByteArray (implements adt.Byte3DArray)
  • oldsegmenters.Utils
  • oldsegmenters.Utils.Spiral (implements java.util.Iterator<E>)
  • vib.VIB
  • video.VideoStack
  • util.WindowHelpers
  • util.XMLFunctions

Interface Hierarchy

• amira.AmiraParameters.IsA
• util.ArrowDisplayer
• adt.Byte3DArray
• vib.segment.CustomCanvas.CanvasListener
• landmarks.FineTuneProgressListener
• features.GaussianGenerationCallback
• inference.InferenceCaller
• vib.InterpolatedImage.Interpolate
• vib.app.module.ModuleListener
• stacks.PaneOwner
• distance.PixelPairs
• vib.PointList.PointListListener
• events.RoiListener
• features.SigmaPalette.SigmaPaletteListener
• events.SliceListener
• vib.transforms.Transform