vib.oldregistration

Class RegistrationAlgorithm

java.lang.Object

vib.oldregistration.RegistrationAlgorithm

Direct Known Subclasses:

AffineFromLandmarks, BooksteinFromLandmarks, RigidFromLandmarks

public abstract class RegistrationAlgorithm
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	RegistrationAlgorithm.ImagePoint

Field Summary

Fields

Modifier and Type	Field and Description
boolean	keepSourceImages
ImagePlus[]	sourceImages

Constructor Summary

Constructors

Constructor and Description
RegistrationAlgorithm()

Method Summary

Modifier and Type	Method and Description
void	generateTransformation()
ImagePlus	getDomain()
ImagePlus	getFloating()
ImagePlus	getModel()
ImagePlus	getTemplate()
void	invalidateTransformation()
boolean	isTransformationValid()
void	loadImages(FileAndChannel f0, FileAndChannel f1)
ImagePlus	register()
ImagePlus	register(NamedPointSet templatePointSet, NamedPointSet floatingPointSet)
void	setImages(ImagePlus template, ImagePlus domain)
void	transformDomainToTemplate(int x, int y, int z, RegistrationAlgorithm.ImagePoint result)
void	transformDomainToTemplateWorld(double x, double y, double z, Point3d result)
void	transformTemplateToDomain(int x, int y, int z, RegistrationAlgorithm.ImagePoint result)
void	transformTemplateToDomainWorld(double x, double y, double z, Point3d result)
void	validateTransformation()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

keepSourceImages

public boolean keepSourceImages

sourceImages

public ImagePlus[] sourceImages

Constructor Detail

RegistrationAlgorithm

public RegistrationAlgorithm()

Method Detail

getTemplate

public ImagePlus getTemplate()

getDomain

public ImagePlus getDomain()

getModel

public ImagePlus getModel()

getFloating

public ImagePlus getFloating()

loadImages

public void loadImages(FileAndChannel f0,
                       FileAndChannel f1)

invalidateTransformation

public void invalidateTransformation()

validateTransformation

public void validateTransformation()

isTransformationValid

public boolean isTransformationValid()

setImages

public void setImages(ImagePlus template,
                      ImagePlus domain)

generateTransformation

public void generateTransformation()

transformDomainToTemplate

public void transformDomainToTemplate(int x,
                                      int y,
                                      int z,
                                      RegistrationAlgorithm.ImagePoint result)

transformDomainToTemplateWorld

public void transformDomainToTemplateWorld(double x,
                                           double y,
                                           double z,
                                           Point3d result)

transformTemplateToDomain

public void transformTemplateToDomain(int x,
                                      int y,
                                      int z,
                                      RegistrationAlgorithm.ImagePoint result)

transformTemplateToDomainWorld

public void transformTemplateToDomainWorld(double x,
                                           double y,
                                           double z,
                                           Point3d result)

register

public ImagePlus register()

register

public ImagePlus register(NamedPointSet templatePointSet,
                          NamedPointSet floatingPointSet)