landmarks

Class NamedPointSet

java.lang.Object

landmarks.NamedPointSet

public class NamedPointSet
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	NamedPointSet.PointsFileException

Constructor Summary

Constructors

Constructor and Description
NamedPointSet()

Method Summary

Modifier and Type	Method and Description
void	add(NamedPointWorld namedPointWorld)
NamedPointWorld	addNewPoint()
NamedPointWorld	delete(int i)
boolean	equals(NamedPointSet other)
static NamedPointSet	forImage(ImagePlus imagePlus)
static NamedPointSet	forImage(ImagePlus imagePlus, String imageFilename)
static NamedPointSet	forImage(String imageFilename)
static NamedPointSet	fromBufferedReader(BufferedReader br, ImagePlus imagePlus, String imageFilename)
static NamedPointSet	fromFile(File f)
static NamedPointSet	fromFile(File f, ImagePlus imagePlus, String imageFilename)
static NamedPointSet	fromFile(String pointsFilename)
static NamedPointSet	fromFile(String pointsFilename, ImagePlus imagePlus, String imageFilename)
static NamedPointSet	fromString(String s)
static NamedPointSet	fromString(String s, ImagePlus imagePlus, String imageFilename)
NamedPointWorld	get(int i)
NamedPointWorld	get(String name)
int	getIndexOfPoint(String name)
Set<String>	getNamesAsSet()
NamedPointWorld	getPoint(String name)
Point3d[]	getPoint3DArrayForNames(String[] names)
String[]	getPointNames()
ListIterator	listIterator()
ArrayList<String>	namesSharedWith(NamedPointSet other)
ArrayList<String>	namesSharedWith(NamedPointSet other, boolean onlySetPoints)
boolean	renamePointTo(int i, String newName)
boolean	saveIGSPointsFile(String savePath)
boolean	savePointsFile(String savePath)
int	size()
String	toString()
NamedPointSet	transformPointsWith(OrderedTransformations o)
byte[]	xmlDataAsBytes()
String	xmlDataAsString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NamedPointSet

public NamedPointSet()

Method Detail

size

public int size()

listIterator

public ListIterator listIterator()

transformPointsWith

public NamedPointSet transformPointsWith(OrderedTransformations o)

getPoint

public NamedPointWorld getPoint(String name)

delete

public NamedPointWorld delete(int i)

get

public NamedPointWorld get(int i)

get

public NamedPointWorld get(String name)

getPointNames

public String[] getPointNames()

getIndexOfPoint

public int getIndexOfPoint(String name)

savePointsFile

public boolean savePointsFile(String savePath)

xmlDataAsString

public String xmlDataAsString()

xmlDataAsBytes

public byte[] xmlDataAsBytes()

saveIGSPointsFile

public boolean saveIGSPointsFile(String savePath)

add

public void add(NamedPointWorld namedPointWorld)

forImage

public static NamedPointSet forImage(ImagePlus imagePlus)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

forImage

public static NamedPointSet forImage(String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

forImage

public static NamedPointSet forImage(ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(String pointsFilename)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(String pointsFilename,
                                     ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(File f)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(File f,
                                     ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromString

public static NamedPointSet fromString(String s)

fromString

public static NamedPointSet fromString(String s,
                                       ImagePlus imagePlus,
                                       String imageFilename)
                                throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

fromBufferedReader

public static NamedPointSet fromBufferedReader(BufferedReader br,
                                               ImagePlus imagePlus,
                                               String imageFilename)
                                        throws NamedPointSet.PointsFileException

Throws:

NamedPointSet.PointsFileException

namesSharedWith

public ArrayList<String> namesSharedWith(NamedPointSet other)

namesSharedWith

public ArrayList<String> namesSharedWith(NamedPointSet other,
                                         boolean onlySetPoints)

getPoint3DArrayForNames

public Point3d[] getPoint3DArrayForNames(String[] names)

getNamesAsSet

public Set<String> getNamesAsSet()

equals

public boolean equals(NamedPointSet other)

toString

public String toString()

Overrides:

toString in class Object

renamePointTo

public boolean renamePointTo(int i,
                             String newName)

addNewPoint

public NamedPointWorld addNewPoint()