Modifier and Type | Class and Description |
---|---|
class |
LiICQ<T extends RealType<T>,U extends RealType<U>>
This algorithm calculates Li et al.'s ICQ (intensity correlation quotient).
|
Modifier and Type | Class and Description |
---|---|
class |
KendallTauBRank<T extends RealType<T>,U extends RealType<U>>
This algorithm calculates Kendall's Tau-b rank correlation coefficient
|
Modifier and Type | Class and Description |
---|---|
class |
MTKT<T extends RealType<T>,U extends RealType<U>>
This algorithm calculates Maximum Trunctated Kendall Tau (MTKT) from Wang et
al.
|
Modifier and Type | Class and Description |
---|---|
class |
CopyArrayImg<T extends NativeType<T>,A extends ArrayDataAccess<A>>
|
class |
CopyII<T>
Copies an
IterableInterval into another IterableInterval |
class |
CopyImg<T extends NativeType<T>>
|
class |
CopyImgLabeling<T extends IntegerType<T> & NativeType<T>,L>
Copying
ImgLabeling into another ImgLabeling |
class |
CopyRAI<T>
Copies a
RandomAccessibleInterval into another
RandomAccessibleInterval |
Modifier and Type | Class and Description |
---|---|
class |
DefaultCreateImgPlus<T>
Default implementation of the "create.imgPlus" op.
|
Modifier and Type | Class and Description |
---|---|
class |
CreateKernel2D<T extends ComplexType<T>>
This Op takes a 2-D array of explicit values and creates a simple image, e.g.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractHaralickFeature<T extends RealType<T>>
Abstract class for HaralickFeatures.
|
class |
DefaultASM<T extends RealType<T>>
Implementation of Angular Second Moment Haralick Feature
|
class |
DefaultClusterPromenence<T extends RealType<T>>
Implementation of Cluster Promenence Haralick Feature
|
class |
DefaultClusterShade<T extends RealType<T>>
Implementation of Cluster Shade Haralick Feature
|
class |
DefaultContrast<T extends RealType<T>>
Implementation of texture contrast haralick feature.
|
class |
DefaultCorrelation<T extends RealType<T>>
Implementation of texture correlation haralick feature based on
http://earlglynn.github.io/RNotes/package/EBImage/Haralick-Textural-Features.html .
|
class |
DefaultDifferenceEntropy<T extends RealType<T>>
Implementation of Difference Entropy Haralick Feature
|
class |
DefaultDifferenceVariance<T extends RealType<T>>
Implementation of Difference Variance Haralick Feature
|
class |
DefaultEntropy<T extends RealType<T>>
Implementation of Entropy Haralick Feature Definition: -( sum_{i=1}^q
sum_{j=1}^q c(i,j) log(c(i,j)) )
|
class |
DefaultICM1<T extends RealType<T>>
Implementation of Information Measure of Correlation 1 Haralick Feature
|
class |
DefaultICM2<T extends RealType<T>>
Implementation of Information Measure of Correlation 2 Haralick Feature
|
class |
DefaultIFDM<T extends RealType<T>>
Implementation of Inverse Difference Moment Haralick Feature based on
http://www.uio.no/studier/emner/matnat/ifi/INF4300/h08/undervisningsmateriale/glcm.pdf .
|
class |
DefaultMaxProbability<T extends RealType<T>>
Implementation of Maximum Probability Haralick Feature
|
class |
DefaultSumAverage<T extends RealType<T>>
Implementation of Sum Average Haralick Feature
|
class |
DefaultSumEntropy<T extends RealType<T>>
Implementation of Sum Entropy Haralick Feature
|
class |
DefaultSumVariance<T extends RealType<T>>
Implementation of Sum Variance Haralick Feature according to
http://murphylab.web.cmu.edu/publications/boland/boland_node26.html .
|
class |
DefaultTextureHomogeneity<T extends RealType<T>>
Implementation of Texture Homogeneity Haralick Feature
|
class |
DefaultVariance<T extends RealType<T>>
Implementation of Variance Haralick Feature based on
http://murphylab.web.cmu.edu/publications/boland/boland_node26.html
|
Modifier and Type | Class and Description |
---|---|
class |
HistogramOfOrientedGradients2D<T extends RealType<T>>
Calculates a histogram of oriented gradients which is a feature descriptor.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractLBP2DFeature<I extends RealType<I>>
Abstract class for 2d local binary pattern feature
|
class |
DefaultLBP2D<I extends RealType<I>>
Default implementation of 2d local binary patterns
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractTamuraFeature<I extends RealType<I>,O extends RealType<O>>
Abstract tamura feature.
|
class |
DefaultCoarsenessFeature<I extends RealType<I>,O extends RealType<O>>
Implementation of Tamura's Coarseness feature
|
class |
DefaultContrastFeature<I extends RealType<I>,O extends RealType<O>>
Default implementation of tamura feature contrast.
|
class |
DefaultDirectionalityFeature<I extends RealType<I>,O extends RealType<O>>
Implementation of Tamura's Directionality Feature
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractZernikeFeature<I extends RealType<I>,O extends RealType<O>>
Abstract Zernike Op.
|
class |
DefaultMagnitudeFeature<T extends RealType<T>,O extends RealType<O>>
Get Magnitude of Zernike moment as feature
|
class |
DefaultPhaseFeature<T extends RealType<T>,O extends RealType<O>>
Get Phase of Zernike moment as feature
|
Modifier and Type | Class and Description |
---|---|
class |
AddPoissonNoiseMap<T extends ComplexType<T>> |
Modifier and Type | Class and Description |
---|---|
class |
DefaultBilateral<I extends RealType<I>,O extends RealType<O>>
Performs a bilateral filter on an image.
|
Modifier and Type | Class and Description |
---|---|
class |
ConvolveNaiveC<I extends RealType<I>,K extends RealType<K>,O extends RealType<O>>
Convolves an image naively.
|
class |
ConvolveNaiveF<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>>
Function adapter for
ConvolveFFTC . |
class |
PadAndConvolveFFT<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>>
Convolve op for (@link Img)
|
class |
PadAndConvolveFFTF<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>>
Function adapter for
PadAndConvolveFFT . |
Modifier and Type | Class and Description |
---|---|
class |
PadAndCorrelateFFT<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>>
Correlate op for (@link Img)
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultDerivativeGauss<T extends RealType<T>>
Performs the 2-D partial derivative Gaussian kernel convolutions on an image,
at a particular point.
|
Modifier and Type | Class and Description |
---|---|
class |
DoGVaryingSigmas<T extends NumericType<T> & NativeType<T>>
Difference of Gaussians (DoG) implementation where sigmas can vary by
dimension.
|
Modifier and Type | Class and Description |
---|---|
class |
FFTMethodsOpC<T extends RealType<T>,C extends ComplexType<C>>
Forward FFT computer that operates on an RAI and wraps FFTMethods.
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultGaussRA<T extends NumericType<T> & NativeType<T>>
Gaussian filter, wrapping
Gauss3 of imglib2-algorithms. |
Modifier and Type | Class and Description |
---|---|
class |
IFFTMethodsOpC<C extends ComplexType<C>,T extends RealType<T>>
Inverse FFT computer that operates on an RAI and wraps FFTMethods.
|
class |
IFFTMethodsOpI<C extends ComplexType<C>>
Inverse FFT inplace operator -- complex to complex only, output size must
conform to supported FFT size.
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultSigmaFilter<T extends RealType<T>,V extends RealType<V>>
Default implementation of
SigmaFilterOp . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultContour<B extends BooleanType<B>>
Generic implementation of
geom.contour . |
class |
DefaultSmallestEnclosingRectangle
Generic implementation of
geom.smallestBoundingBox . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultInertiaTensor3D<B extends BooleanType<B>>
This
Op computes the 2nd multi variate of a IterableRegion
(Label). |
class |
DefaultInertiaTensor3DMesh
This
Op computes the 2nd multi variate of a IterableRegion
(Label). |
class |
DefaultMainElongation
Generic implementation of
Ops.Geometric.MainElongation
Adapted to 3D from http://www.math.uci.edu/icamp/summer/research_11/park/
shape_descriptors_survey.pdf |
class |
DefaultMarchingCubes<T extends BooleanType<T>>
This is a marching cubes implementation.
|
class |
DefaultMedianElongation
Generic implementation of
Ops.Geometric.MedianElongation . |
class |
DefaultSparenessMesh
Generic implementation of
Ops.Geometric.Spareness . |
Modifier and Type | Class and Description |
---|---|
class |
AbstractVertexInterpolator
This is the
AbstractVertexInterpolator . |
class |
BitTypeVertexInterpolator
The
BitTypeVertexInterpolator returns the point which is
in the middle of the two input vertices. |
class |
DefaultSmallestOrientedBoundingBox
Generic implementation of
geom.smallestBoundingBox . |
class |
DefaultVertexInterpolator
Linearly interpolate the position where an isosurface cuts an edge
between two vertices, each with their own scalar value
|
Modifier and Type | Class and Description |
---|---|
class |
CooccurrenceMatrix2D<T extends RealType<T>>
Calculates coocccurrence matrix from an 2D-
IterableInterval . |
class |
CooccurrenceMatrix3D<T extends RealType<T>>
Calculates coocccurrence matrix from an 3D-
IterableInterval . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultDistanceTransform<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
class |
DefaultDistanceTransformCalibration<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
class |
DistanceTransform2D<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
class |
DistanceTransform2DCalibration<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
class |
DistanceTransform3D<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
class |
DistanceTransform3DCalibration<B extends BooleanType<B>,T extends RealType<T>>
Computes a distance transform, i.e.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractIntegralImg<I extends RealType<I>>
Abstract base class for n-dimensional integral images.
|
class |
DefaultIntegralImg<I extends RealType<I>>
n-dimensional integral image that stores sums using
RealType . |
class |
SquareIntegralImg<I extends RealType<I>>
n-dimensional squared integral image that stores sums using
RealType . |
Modifier and Type | Class and Description |
---|---|
class |
InvertIIInteger<T extends IntegerType<T>> |
Modifier and Type | Class and Description |
---|---|
class |
Watershed<T extends RealType<T>,B extends BooleanType<B>>
The Watershed algorithm segments and labels a grayscale image analogous to a
heightmap.
|
class |
WatershedBinary<T extends BooleanType<T>,B extends BooleanType<B>>
The Watershed algorithm segments and labels a grayscale image analogous to a
heightmap.
|
class |
WatershedBinarySingleSigma<T extends BooleanType<T>,B extends BooleanType<B>>
The Watershed algorithm segments and labels a grayscale image analogous to a
heightmap.
|
class |
WatershedSeeded<T extends RealType<T>,B extends BooleanType<B>>
The Watershed algorithm segments and labels a grayscale image analogous to a
heightmap.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractImageMomentOp<I extends RealType<I>,O extends RealType<O>>
Abstract
ImageMomentOp . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultCentralMoment00<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment00 . |
class |
DefaultCentralMoment01<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment01 directly. |
class |
DefaultCentralMoment02<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment02 . |
class |
DefaultCentralMoment03<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment03 using |
class |
DefaultCentralMoment10<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment10 directly. |
class |
DefaultCentralMoment11<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment11 . |
class |
DefaultCentralMoment12<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment12 . |
class |
DefaultCentralMoment20<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment20 . |
class |
DefaultCentralMoment21<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment21 . |
class |
DefaultCentralMoment30<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment30 . |
class |
IterableCentralMoment00<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment00 directly. |
class |
IterableCentralMoment11<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.centralMoment11 directly. |
Modifier and Type | Class and Description |
---|---|
class |
DefaultHuMoment1<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment1 . |
class |
DefaultHuMoment2<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment2 . |
class |
DefaultHuMoment3<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment3 . |
class |
DefaultHuMoment4<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment4 . |
class |
DefaultHuMoment5<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment5 . |
class |
DefaultHuMoment6<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment6 . |
class |
DefaultHuMoment7<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.huMoment7 . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultMoment00<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.moment00 . |
class |
DefaultMoment01<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.moment01 . |
class |
DefaultMoment10<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.moment10 . |
class |
DefaultMoment11<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.moment11 . |
Modifier and Type | Class and Description |
---|---|
class |
DefaultNormalizedCentralMoment02<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment02 . |
class |
DefaultNormalizedCentralMoment03<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment03 . |
class |
DefaultNormalizedCentralMoment11<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment11 . |
class |
DefaultNormalizedCentralMoment12<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment12 . |
class |
DefaultNormalizedCentralMoment20<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment20 . |
class |
DefaultNormalizedCentralMoment21<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment21 . |
class |
DefaultNormalizedCentralMoment30<I extends RealType<I>,O extends RealType<O>>
Op to calculate the imageMoments.normalizedCentralMoment30 . |
Modifier and Type | Class and Description |
---|---|
class |
MergeLabeling<L,I extends IntegerType<I>,B extends BooleanType<B>>
Merges the labels of two
ImgLabeling within a defined mask (if
provided). |
Modifier and Type | Class and Description |
---|---|
class |
DefaultCCA<T extends IntegerType<T>,L,I extends IntegerType<I>>
Default Implementation wrapping
ConnectedComponents of
ImgLib2-algorithms. |
Modifier and Type | Class and Description |
---|---|
static class |
IIToIIOutputII.And<T extends BooleanType<T>> |
static class |
IIToIIOutputII.Or<T extends BooleanType<T>> |
static class |
IIToIIOutputII.Xor<T extends BooleanType<T>> |
static class |
IIToRAIOutputII.And<T extends NumericType<T>> |
static class |
IIToRAIOutputII.Or<T extends NumericType<T>> |
static class |
IIToRAIOutputII.Xor<T extends NumericType<T>> |
Modifier and Type | Class and Description |
---|---|
class |
ComplexConjugateMultiplyMap<T extends ComplexType<T>> |
class |
ComplexConjugateMultiplyOp<T extends ComplexType<T>> |
Modifier and Type | Class and Description |
---|---|
class |
ListBlackTopHat<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
ListClose<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultDilate<T extends RealType<T>>
Computes the dilation of a
RandomAccessibleInterval using a single
Shape . |
class |
ListDilate<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultErode<T extends RealType<T>>
Computes the erosion of a
RandomAccessibleInterval using a single
Shape . |
class |
ListErode<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
ListOpen<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
ListTopHat<T extends RealType<T>>
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultDetectJunctions
Finds the junctions between a
ArrayList of WritablePolyline ,
intended to be used optionally after running DefaultDetectRidges but
applicable to all groups of polylines. |
Modifier and Type | Class and Description |
---|---|
class |
DefaultDetectRidges<T extends RealType<T>>
Performs the Ridge Detection algorithm on a 2-Dimensional, gray-scale image.
|
Modifier and Type | Class and Description |
---|---|
class |
Quadric
An op that fits a quadratic surface (quadric) into a set of points.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalThreshold<T extends RealType<T>>
Apply a local thresholding method to an image, optionally using a out of
bounds strategy.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalBernsenThreshold<T extends RealType<T>>
LocalThresholdMethod which is similar to
LocalMidGreyThreshold , but uses a
constant value rather than the value of the input pixel when the contrast in
the neighborhood of that pixel is too small. |
Modifier and Type | Class and Description |
---|---|
class |
LocalContrastThreshold<T extends RealType<T>>
LocalThresholdMethod which determines whether a pixel is closer to the
maximum or minimum pixel of a neighborhood.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalMeanThreshold<T extends RealType<T>>
LocalThresholdMethod that uses the mean and operates directly of RAIs.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalMedianThreshold<T extends RealType<T>>
LocalThresholdMethod using median.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalMidGreyThreshold<T extends RealType<T>>
LocalThresholdMethod which thresholds against the average of the maximum and
minimum pixels of a neighborhood.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalNiblackThreshold<T extends RealType<T>>
LocalThresholdMethod using Niblack's thresholding method.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalPhansalkarThreshold<T extends RealType<T>>
This is a modification of Sauvola's thresholding method to deal with low
contrast images.
|
Modifier and Type | Class and Description |
---|---|
class |
LocalSauvolaThreshold<T extends RealType<T>>
This is a modification of Niblack's thresholding method.
|
Modifier and Type | Class and Description |
---|---|
class |
EulerCharacteristic26N<B extends BooleanType<B>>
An Op which calculates the euler characteristic (χ) of the given 3D binary image.
Here Euler characteristic is defined as χ = β_0 - β_1 + β_2, where β_i are so called Betti numbers β_0 = number of separate particles β_1 = number of handles β_2 = number enclosed cavities |
class |
EulerCharacteristic26NFloating<B extends BooleanType<B>>
An Op which calculates the euler characteristic (χ) of the given binary image.
|
class |
EulerCorrection<B extends BooleanType<B>>
An Op which calculates the correction needed to approximate the contribution of the image to the
Euler characteristic χ of the whole image.
|
Modifier and Type | Class and Description |
---|---|
class |
DefaultProjectParallel<T,V> |
class |
ProjectRAIToII<T,V> |
class |
ProjectRAIToIterableInterval<T,V> |
Modifier and Type | Class and Description |
---|---|
class |
DefaultScaleView<T>
Scales a
RandomAccessibleInterval in each dimension with the provided
scale factors. |
Modifier and Type | Class and Description |
---|---|
class |
SubsampleIntervalViewStepsForDims<T>
Wraps the
Views.subsample(RandomAccessible, long[]) method while
preserving interval bounds. |
class |
SubsampleViewStepsForDims<T>
Wraps the
Views.subsample(RandomAccessible, long[]) method. |
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