| Modifier and Type | Class and Description |
|---|---|
class |
DefaultDataset
Default implementation of
Dataset. |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
DefaultDataset.copy() |
Dataset |
Dataset.copy() |
Dataset |
DatasetFactory.create(Dimensions dimensions) |
Dataset |
DatasetFactory.create(Dimensions dim,
RealType<?> type)
Deprecated.
|
<T extends RealType<T>> |
DefaultDatasetService.create(ImgFactory<T> factory,
long[] dims,
String name,
AxisType[] axes) |
<T extends RealType<T>> |
DatasetService.create(ImgFactory<T> factory,
long[] dims,
String name,
AxisType[] axes)
Creates a new dataset using the provided
ImgFactory. |
<T extends RealType<T>> |
DefaultDatasetService.create(ImgFactory<T> factory,
T type,
long[] dims,
String name,
AxisType[] axes)
Deprecated.
|
<T extends RealType<T>> |
DatasetService.create(ImgFactory<T> factory,
T type,
long[] dims,
String name,
AxisType[] axes)
Deprecated.
|
<T extends Type<T>> |
DefaultDatasetService.create(ImgPlus<T> imgPlus) |
<T extends Type<T>> |
DatasetService.create(ImgPlus<T> imgPlus)
Creates a new dataset using the provided
ImgPlus. |
Dataset |
DatasetFactory.create(int[] dimensions) |
Dataset |
DatasetFactory.create(int[] dim,
RealType<?> type)
Deprecated.
|
Dataset |
DatasetFactory.create(long... dimensions) |
Dataset |
DatasetFactory.create(long[] dim,
RealType<?> type)
Deprecated.
|
Dataset |
DefaultDatasetService.create(long[] dims,
String name,
AxisType[] axes,
int bitsPerPixel,
boolean signed,
boolean floating) |
Dataset |
DatasetService.create(long[] dims,
String name,
AxisType[] axes,
int bitsPerPixel,
boolean signed,
boolean floating)
Creates a new dataset.
|
Dataset |
DefaultDatasetService.create(long[] dims,
String name,
AxisType[] axes,
int bitsPerPixel,
boolean signed,
boolean floating,
boolean virtual) |
Dataset |
DatasetService.create(long[] dims,
String name,
AxisType[] axes,
int bitsPerPixel,
boolean signed,
boolean floating,
boolean virtual)
Creates a new dataset.
|
<T extends Type<T>> |
DefaultDatasetService.create(RandomAccessibleInterval<T> rai) |
<T extends Type<T>> |
DatasetService.create(RandomAccessibleInterval<T> rai)
Creates a new dataset using the provided
RandomAccessibleInterval. |
Dataset |
DatasetFactory.create(Supplier<RealType<?>> typeSupplier,
Dimensions dim)
Deprecated.
|
Dataset |
DatasetFactory.create(Supplier<RealType<?>> typeSupplier,
int[] dim)
Deprecated.
|
Dataset |
DatasetFactory.create(Supplier<RealType<?>> typeSupplier,
long... dim)
Deprecated.
|
<T extends RealType<T> & NativeType<T>> |
DefaultDatasetService.create(T type,
long[] dims,
String name,
AxisType[] axes) |
<T extends RealType<T> & NativeType<T>> |
DatasetService.create(T type,
long[] dims,
String name,
AxisType[] axes)
Creates a new dataset.
|
<T extends RealType<T> & NativeType<T>> |
DefaultDatasetService.create(T type,
long[] dims,
String name,
AxisType[] axes,
boolean virtual) |
<T extends RealType<T> & NativeType<T>> |
DatasetService.create(T type,
long[] dims,
String name,
AxisType[] axes,
boolean virtual)
Creates a new dataset.
|
Dataset |
DefaultDataset.duplicate() |
Dataset |
Dataset.duplicate()
Creates a copy of the dataset.
|
Dataset |
DefaultDataset.duplicateBlank() |
Dataset |
Dataset.duplicateBlank()
Creates a copy of the dataset, but without copying any pixel values.
|
Dataset |
DrawingTool.getDataset()
Return the Dataset associated with this DrawingTool.
|
Dataset |
ImageGrabber.grab(DatasetView view,
String outputName)
Creates a merged color
Dataset from a DatasetView. |
Dataset |
DefaultDatasetService.open(String source)
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
|
Dataset |
DatasetService.open(String source)
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
|
Dataset |
DefaultDatasetService.open(String source,
Object config)
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
|
Dataset |
DatasetService.open(String source,
Object config)
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
|
| Modifier and Type | Method and Description |
|---|---|
List<Dataset> |
DefaultDatasetService.getDatasets() |
List<Dataset> |
DatasetService.getDatasets()
Gets a list of all
Datasets. |
List<Dataset> |
DefaultDatasetService.getDatasets(ImageDisplay display) |
List<Dataset> |
DatasetService.getDatasets(ImageDisplay display)
Gets a list of
Datasets linked to the given ImageDisplay. |
| Modifier and Type | Method and Description |
|---|---|
void |
DefaultDataset.copyDataFrom(Dataset other) |
void |
Dataset.copyDataFrom(Dataset other)
Changes a Dataset's internal data and metadata to match that from a given
Dataset.
|
void |
DefaultDataset.copyInto(Dataset target) |
void |
Dataset.copyInto(Dataset target)
Copies the dataset's pixels into the given target dataset.
|
void |
DefaultDatasetService.revert(Dataset dataset)
Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
|
void |
DatasetService.revert(Dataset dataset)
Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
|
Object |
DefaultDatasetService.save(Dataset dataset,
String destination)
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
|
Object |
DatasetService.save(Dataset dataset,
String destination)
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
|
Object |
DefaultDatasetService.save(Dataset dataset,
String destination,
Object config)
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
|
Object |
DatasetService.save(Dataset dataset,
String destination,
Object config)
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
|
| Constructor and Description |
|---|
DatasetFactory(RealType<?> type,
Dataset dataset,
net.imagej.DatasetImgFactory.ImgCreator creator,
Function<Img<?>,Dataset> wrapper) |
DatasetImgFactory(T type,
Dataset dataset,
net.imagej.DatasetImgFactory.ImgCreator creator) |
DrawingTool(Dataset ds,
RenderingService service)
Creates a DrawingTool to modify a specified Dataset.
|
| Constructor and Description |
|---|
DatasetFactory(RealType<?> type,
Dataset dataset,
net.imagej.DatasetImgFactory.ImgCreator creator,
Function<Img<?>,Dataset> wrapper) |
| Modifier and Type | Method and Description |
|---|---|
Class<Dataset> |
DatasetToImgPlusConverter.getInputType() |
Class<Dataset> |
DatasetToImgConverter.getInputType() |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ScreenCaptureService.captureScreen() |
Dataset |
DummyScreenCaptureService.captureScreen()
No-op implementation.
|
Dataset |
ScreenCaptureService.captureScreenRegion(int x,
int y,
int width,
int height) |
Dataset |
DummyScreenCaptureService.captureScreenRegion(int x,
int y,
int width,
int height)
No-op implementation.
|
Dataset |
ImageDisplayService.getActiveDataset()
Gets the active
Dataset, if any, of the currently active
ImageDisplay. |
Dataset |
DefaultImageDisplayService.getActiveDataset() |
Dataset |
ImageDisplayService.getActiveDataset(ImageDisplay display)
Gets the active
Dataset, if any, of the given ImageDisplay. |
Dataset |
DefaultImageDisplayService.getActiveDataset(ImageDisplay display) |
Dataset |
DefaultDatasetView.getData() |
Dataset |
DatasetView.getData() |
| Modifier and Type | Method and Description |
|---|---|
void |
OverlayService.drawOverlay(Overlay o,
Dataset ds,
Position position,
ChannelCollection channelData)
Draws the outline of a given overlay in a dataset using the set of channel
information provided.
|
void |
DefaultOverlayService.drawOverlay(Overlay o,
Dataset ds,
Position position,
ChannelCollection channels) |
void |
OverlayService.fillOverlay(Overlay o,
Dataset ds,
Position position,
ChannelCollection channelData)
Draws and fills the outline of a given overlay in a dataset using the set
of channel information provided.
|
void |
DefaultOverlayService.fillOverlay(Overlay o,
Dataset ds,
Position position,
ChannelCollection channels) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ActiveDatasetPreprocessor.getValue() |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
DatasetUpdatedEvent.getObject() |
Dataset |
DatasetRestructuredEvent.getObject() |
Dataset |
DatasetDeletedEvent.getObject() |
Dataset |
DatasetCreatedEvent.getObject() |
| Constructor and Description |
|---|
DatasetCreatedEvent(Dataset dataset) |
DatasetDeletedEvent(Dataset dataset) |
DatasetRestructuredEvent(Dataset dataset) |
DatasetRGBChangedEvent(Dataset dataset) |
DatasetTypeChangedEvent(Dataset dataset) |
DatasetUpdatedEvent(Dataset dataset,
boolean metadataOnly) |
| Modifier and Type | Method and Description |
|---|---|
ij.ImagePlus |
LegacyImageMap.registerDataset(Dataset ds)
This method takes a provided
Dataset, converts it to an
ImagePlus, stores the new ImagePlus in the Dataset
's properties uner LegacyImageMap.IMP_KEY and finally creates an
ImageDisplay using the provided Dataset. |
| Modifier and Type | Method and Description |
|---|---|
Class<Dataset> |
DatasetToImagePlusConverter.getInputType() |
Class<Dataset> |
ImagePlusToDatasetConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
LegacyImageDisplayViewer.capture() |
Dataset |
LegacyImageDisplayService.getActiveDataset() |
Dataset |
LegacyImageDisplayService.getActiveDataset(ImageDisplay display) |
| Modifier and Type | Method and Description |
|---|---|
ij.ImagePlus |
ImageTranslator.createLegacyImage(Dataset ds) |
ij.ImagePlus |
ImagePlusCreator.createLegacyImage(Dataset ds) |
ij.ImagePlus |
ImageTranslator.createLegacyImage(Dataset ds,
ImageDisplay display) |
ij.ImagePlus |
ImagePlusCreator.createLegacyImage(Dataset dataset,
ImageDisplay display) |
static boolean |
LegacyUtils.dimensionsIJ1Compatible(Dataset ds)
Determines if a Dataset's dimensions cannot be represented within a legacy
ImageJ ImageStack.
|
static void |
DatasetUtils.initColorTables(Dataset ds)
Allocates the color table array within a new planar Dataset (one table per
plane).
|
void |
MetadataHarmonizer.updateDataset(Dataset ds,
ij.ImagePlus imp)
Sets a
Dataset's metadata to match a given ImagePlus. |
void |
DataHarmonizer.updateDataset(Dataset ds,
ij.ImagePlus imp) |
void |
CompositeHarmonizer.updateDataset(Dataset ds,
ij.ImagePlus imp)
Sets the
Dataset's number of composite channels to display
simultaneously based on an input ImagePlus's makeup. |
void |
MetadataHarmonizer.updateLegacyImage(Dataset ds,
ij.ImagePlus imp)
Sets an
ImagePlus' metadata to match a given Dataset. |
void |
DataHarmonizer.updateLegacyImage(Dataset ds,
ij.ImagePlus imp) |
void |
CompositeHarmonizer.updateLegacyImage(Dataset ds,
ij.ImagePlus imp) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
LUTService.createDataset(String title,
ColorTable colorTable)
Creates a new dataset showing the given
ColorTable as a ramp. |
Dataset |
DefaultLUTService.createDataset(String title,
ColorTable colorTable) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ImageJMATLABService.getDataset(matlabcontrol.extensions.MatlabNumericArray array)
Converts a
MatlabNumericArray retrieved from MATLAB to an
Dataset. |
Dataset |
DefaultImageJMATLABService.getDataset(matlabcontrol.extensions.MatlabNumericArray array) |
| Modifier and Type | Method and Description |
|---|---|
Class<Dataset> |
MATLABDatasetConverter.getInputType() |
Class<Dataset> |
DatasetMATLABConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
matlabcontrol.extensions.MatlabNumericArray |
ImageJMATLABService.getArray(Dataset dataset)
Converts a
Dataset to a MatlabNumericArray which can then
be safely passed to MATLAB. |
matlabcontrol.extensions.MatlabNumericArray |
DefaultImageJMATLABService.getArray(Dataset dataset) |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
Images.bufferedImage(Dataset source)
Converts the given
Dataset to a BufferedImage. |
default Object |
NotebookService.display(Dataset source)
Converts the given image to a form renderable by scientific notebooks.
|
| Modifier and Type | Method and Description |
|---|---|
Dataset |
OMEROService.downloadImage(client client,
long imageID)
Downloads the image with the given image ID from OMERO, storing the result
into a new ImageJ
Dataset. |
Dataset |
DefaultOMEROService.downloadImage(client client,
long imageID) |
| Modifier and Type | Method and Description |
|---|---|
long |
OMEROService.uploadImage(client client,
Dataset dataset)
Uploads the given ImageJ
Dataset's image to OMERO, returning the
new image ID on the OMERO server. |
long |
DefaultOMEROService.uploadImage(client client,
Dataset dataset) |
void |
OMEROService.uploadImage(OMEROLocation credentials,
Dataset image,
boolean uploadROIs,
TreeNode<?> rois,
boolean updateROIs,
boolean uploadTables,
List<Table<?,?>> tables,
String[] tableNames,
long omeroDatasetID)
Uploads the given image to OMERO, and optionally uploads the given ROIs and
tables.
|
void |
DefaultOMEROService.uploadImage(OMEROLocation credentials,
Dataset image,
boolean uploadROIs,
TreeNode<?> rois,
boolean updateROIs,
boolean uploadTables,
List<Table<?,?>> tables,
String[] tableNames,
long omeroDatasetID) |
| Modifier and Type | Field and Description |
|---|---|
Dataset |
EasterEgg.dataset |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
FillDataValues.getDataset() |
| Modifier and Type | Method and Description |
|---|---|
void |
FillDataValues.setDataset(Dataset dataset) |
| Constructor and Description |
|---|
InplaceUnaryTransform(net.imglib2.ops.operation.complex.unary.ComplexUnaryOperation<O,O> operation,
O outType,
Dataset dataset,
Overlay overlay)
All planes version
|
InplaceUnaryTransform(net.imglib2.ops.operation.complex.unary.ComplexUnaryOperation<O,O> operation,
O outType,
Dataset dataset,
Overlay overlay,
Position planePos)
Single plane versions
|
NoiseAdder(Dataset dataset,
Overlay overlay,
Position pos)
Constructor - takes an input Dataset as the baseline data to compute
perturbed values from.
|
| Modifier and Type | Field and Description |
|---|---|
protected Dataset |
AbstractNoiseReducerPlugin.input |
protected Dataset |
AbstractNoiseReducerPlugin.output |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
AbstractNoiseReducerPlugin.getInput() |
Dataset |
AbstractNoiseReducerPlugin.getOutput() |
Dataset |
Reducer.reduceNoise(String neighDescrip) |
| Modifier and Type | Method and Description |
|---|---|
void |
AbstractNoiseReducerPlugin.setInput(Dataset ds) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
Binarize.inputData()
Gets the reference input data.
|
Dataset |
Binarize.inputMask()
Gets the preexisting mask (if any).
|
Dataset |
Binarize.outputMask()
Gets the output mask.
|
| Modifier and Type | Method and Description |
|---|---|
void |
Binarize.setInputData(Dataset dataset)
Sets the reference input data.
|
void |
Binarize.setInputMask(Dataset dataset)
Sets the preexisting mask (if any).
|
protected void |
OpenBinaryImage.updateDataset(Dataset ds) |
protected void |
ErodeBinaryImage.updateDataset(Dataset ds) |
protected void |
DilateBinaryImage.updateDataset(Dataset ds) |
protected void |
CloseBinaryImage.updateDataset(Dataset ds) |
protected abstract void |
AbstractMorphOpsCommand.updateDataset(Dataset ds) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ImageCalculator.getInput1()
Returns the
Dataset that is input 1 for this image calculation. |
Dataset |
ImageCalculator.getInput2()
Returns the
Dataset that is input 2 for this image calculation. |
Dataset |
ImageCalculator.getOutput()
Returns the output
Dataset of the image calculation. |
| Modifier and Type | Method and Description |
|---|---|
void |
ImageCalculator.setInput1(Dataset input1)
Sets the
Dataset that will be input 1 for this image calculation. |
void |
ImageCalculator.setInput2(Dataset input2)
Sets the
Dataset that will be input 2 for this image calculation. |
| Constructor and Description |
|---|
Correlation3x3Operation(Dataset input,
RealRect selection,
double[] kernel)
Constructor.
|
| Modifier and Type | Method and Description |
|---|---|
Dataset |
Flatten.getOutput() |
Dataset |
CaptureScreen.getOutput() |
Dataset |
CaptureImage.getOutput() |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
TranslateImage.getDataset()
Gets the Dataset that the translate operation will be run upon.
|
Dataset |
RotateImageXY.getDataset()
Gets the Dataset that the rotate operation will be run upon.
|
Dataset |
ResliceImage.getDataset()
Gets the Dataset that the reslice operation will be run upon.
|
Dataset |
ResizeImage.getDataset()
Gets the Dataset that the resize operation will be run upon.
|
Dataset |
Binner.getDataset()
Gets the Dataset that the bin operation will be run upon.
|
| Modifier and Type | Method and Description |
|---|---|
void |
TranslateImage.setDataset(Dataset ds)
Sets the Dataset that the translate operation will be run upon.
|
void |
RotateImageXY.setDataset(Dataset ds)
Sets the Dataset that the rotate operation will be run upon.
|
void |
ResliceImage.setDataset(Dataset ds)
Sets the Dataset that the reslice operation will be run upon.
|
void |
ResizeImage.setDataset(Dataset ds)
Sets the Dataset that the resize operation will be run upon.
|
void |
Binner.setDataset(Dataset ds)
Sets the Dataset that the bin operation will be run upon.
|
| Constructor and Description |
|---|
ImgLibDataTransform(Dataset dataset,
OutputAlgorithm<Img<? extends RealType<?>>> algorithm) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
NewImage.getDataset() |
| Constructor and Description |
|---|
Neighborhood3x3Operation(Dataset input,
RealRect selection,
Neighborhood3x3Watcher watcher) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ReorderData.getDataset() |
Dataset |
FlipAxis.getDataset() |
Dataset |
EditAxes.getDataset() |
Dataset |
DeleteData.getDataset() |
Dataset |
DeleteAxis.getDataset() |
Dataset |
AddData.getDataset() |
Dataset |
AddAxis.getDataset() |
| Modifier and Type | Method and Description |
|---|---|
static ImgPlus<? extends RealType<?>> |
RestructureUtils.createNewImgPlus(Dataset ds,
long[] dimensions,
AxisType[] axisTypes)
Creates a new
ImgPlus with specified dimensions and axes. |
static long[] |
RestructureUtils.getDimensions(Dataset ds,
AxisType oneToModify,
long delta)
Gets the dimensions of the output data
|
void |
ReorderData.setDataset(Dataset dataset) |
void |
FlipAxis.setDataset(Dataset ds) |
void |
EditAxes.setDataset(Dataset dataset) |
void |
DeleteData.setDataset(Dataset dataset) |
void |
DeleteAxis.setDataset(Dataset dataset) |
void |
AddData.setDataset(Dataset dataset) |
void |
AddAxis.setDataset(Dataset dataset) |
| Constructor and Description |
|---|
XYFlipper(Dataset dataset,
RealRect bounds,
net.imagej.plugins.commands.rotate.XYFlipper.FlipCoordinateTransformer flipper) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
PixelRecorder.getDataset()
Returns the Dataset associated with the processed mouse event.
|
| Modifier and Type | Method and Description |
|---|---|
default void |
ROIService.clear(Dataset img)
Clears all
MaskPredicates associated with the given Dataset |
default ROITree |
ROIService.getROIs(Dataset img)
|
| Modifier and Type | Method and Description |
|---|---|
default void |
TableService.add(Table<?,?> table,
Dataset img)
|
default void |
TableService.clear(Dataset img)
|
List<Table<?,?>> |
TableService.getTables(Dataset img)
|
List<Table<?,?>> |
DefaultTableService.getTables(Dataset img) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
AWTScreenCaptureService.captureScreen()
Captures the entire screen and returns the result in a Dataset.
|
Dataset |
AWTScreenCaptureService.captureScreenRegion(int x,
int y,
int width,
int height)
Captures a rectangular region of the screen and returns the result in
a Dataset.
|
| Constructor and Description |
|---|
ThresholdFigure(ImageDisplay display,
Dataset dataset,
ThresholdOverlay overlay) |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
JHotDrawImageCanvas.capture()
Captures the current view of data displayed in the canvas, including all
JHotDraw embellishments.
|
Dataset |
AbstractSwingImageDisplayViewer.capture() |
| Modifier and Type | Method and Description |
|---|---|
Dataset |
ImageDisplayViewer.capture() |
protected Dataset |
AbstractImageDisplayViewer.getDataset(DataView view) |
Copyright © 2014–2022 ImageJ. All rights reserved.