| Package | Description |
|---|---|
| sc.fiji.snt |
SNT core classes
|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.gui |
Customizations and commands for SNT's GUI.
|
| sc.fiji.snt.gui.cmds |
Scijava-based GUIs for SNT built-in commands.
|
| sc.fiji.snt.tracing | |
| sc.fiji.snt.util |
Miscellaneous SNT utilities, including classes defining reconstruction nodes.
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| Modifier and Type | Field and Description |
|---|---|
protected SNT |
PathAndFillManager.plugin |
| Modifier and Type | Method and Description |
|---|---|
SNT |
SNTService.getPlugin()
Returns a reference to the active
SNT plugin. |
SNT |
PathAndFillManager.getPlugin()
Gets the SNT instance.
|
static SNT |
SNTUtils.getPluginInstance() |
SNT |
PathManagerUI.getSNT() |
SNT |
SNTService.initialize(boolean startUI)
Initializes SNT.
|
SNT |
SNTService.initialize(ij.ImagePlus imp,
boolean startUI)
Initializes SNT.
|
SNT |
SNTService.initialize(String imagePath,
boolean startUI)
Initializes SNT.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
Path.drawPathAsPoints(Graphics2D g2,
TracerCanvas canvas,
SNT snt) |
protected static void |
SNTUtils.setPlugin(SNT plugin) |
| Constructor and Description |
|---|
FillManagerUI(SNT plugin)
Instantiates a new Fill Manager Dialog
|
PathAndFillManager(SNT plugin) |
PathFitter(SNT plugin,
Path path)
Instantiates a new PathFitter.
|
PathManagerUI(SNT plugin)
Instantiates a new Path Manager Dialog.
|
SciViewSNT(SNT snt) |
SNTPrefs(SNT snt) |
SNTUI(SNT plugin)
Instantiates SNT's main UI and associated
PathManagerUI and
FillManagerUI instances. |
| Constructor and Description |
|---|
PathStraightener(Path path,
SNT snt)
Instantiates a new PathStraightener
|
| Constructor and Description |
|---|
ShollAnalysisDialog(double x_start,
double y_start,
double z_start,
SNT plugin)
Deprecated.
|
SigmaPalette(SNT snt) |
| Modifier and Type | Field and Description |
|---|---|
protected SNT |
CommonDynamicCmd.snt |
| Constructor and Description |
|---|
AbstractSearch(SNT snt,
ij.ImagePlus imagePlus) |
AbstractSearch(SNT snt,
RandomAccessibleInterval<? extends RealType<?>> image) |
BiSearch(SNT snt,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z) |
BiSearch(SNT snt,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z,
Cost costFunction,
Heuristic heuristic) |
BiSearch(SNT snt,
RandomAccessibleInterval<? extends RealType<?>> image,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z,
Cost costFunction,
Heuristic heuristic) |
ManualTracerThread(SNT plugin,
double start_x,
double start_y,
double start_z,
double goal_x,
double goal_y,
double goal_z) |
SearchThread(SNT snt,
RandomAccessibleInterval<? extends RealType<?>> image,
Cost costFunction) |
TracerThread(SNT snt,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z) |
TracerThread(SNT snt,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z,
Cost costFunction,
Heuristic heuristic) |
TracerThread(SNT snt,
RandomAccessibleInterval<? extends RealType<?>> image,
int start_x,
int start_y,
int start_z,
int goal_x,
int goal_y,
int goal_z,
Cost costFunction,
Heuristic heuristic) |
| Modifier and Type | Method and Description |
|---|---|
static double[] |
SigmaUtils.getDefaultSigma(SNT snt) |
| Constructor and Description |
|---|
Viewer3D(SNT snt) |
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