Package sc.fiji.snt.analysis

• Class Summary 

  Class	Description
  AbstractConvexHull
  ColorMapper	Parent class for ColorMappers.
  ConvexHull2D
  ConvexHull3D
  GroupedTreeStatistics	Computes statistics from Tree groups.
  MultiTreeColorMapper	Class for color coding groups of Trees.
  MultiTreeStatistics	Computes summary and descriptive statistics from univariate properties of Tree groups.
  NodeColorMapper	Class for color coding of NodeStatistics results.
  NodeStatistics<T extends PointInImage>	Computes summary and descriptive statistics from a Collection of nodes.
  PathAnalyzer
  PathProfiler	Command to retrieve Profile plots (plots of voxel intensities values along a Path) from reconstructions.
  PathStraightener	Command to "straighten" an image using Path coordinates.
  PersistenceAnalyzer	Performs persistent homology analysis on a Tree.
  ProfileProcessor<T extends RealType<T>>	Profile intensities within local neighborhoods around Path PointInImages
  RoiConverter	Converts SNT Paths into (IJ1) ROIs.
  ShollAnalyzer	Class to retrieve Sholl metrics from a Tree.
  SkeletonConverter	Class for generation of Trees from a skeletonized ImagePlus.
  SNTChart	Extension of ChartFrame with convenience methods for plot annotations.
  SNTTable	Extension of DefaultGenericTable with (minor) scripting conveniences.
  StrahlerAnalyzer	Class to perform Horton-Strahler analysis on a Tree.
  TreeAnalyzer	Class for analysis of Trees
  TreeColorMapper	Class for color coding Trees.
  TreeStatistics	Computes summary and descriptive statistics from univariate properties of Paths and Nodes in a Tree.

• Enum Summary 

  Enum	Description
  ProfileProcessor.Metric
  ProfileProcessor.Shape

Package sc.fiji.snt.analysis Description

Author:

Tiago Ferreira