| Package | Description |
|---|---|
| sc.fiji.snt |
SNT core classes
|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.analysis.graph |
Classes for handling neuronal reconstructions as graphs
|
| sc.fiji.snt.analysis.sholl.gui |
GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
|
| sc.fiji.snt.plugin |
SNT add-ons as IJ2 commands
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| Class and Description |
|---|
| SNTTable
Extension of
DefaultGenericTable with (minor) scripting conveniences. |
| TreeAnalyzer
Class for analysis of
Trees |
| TreeStatistics
Computes summary and descriptive statistics from univariate properties of
Paths and Nodes in a
Tree. |
| Class and Description |
|---|
| AbstractConvexHull |
| ColorMapper
Parent class for ColorMappers.
|
| MultiTreeStatistics
Computes summary and descriptive statistics from univariate properties of
Tree groups. |
| NodeStatistics
Computes summary and descriptive statistics from a Collection of nodes.
|
| ProfileProcessor.Metric |
| ProfileProcessor.Shape |
| ShollAnalyzer
Class to retrieve Sholl metrics from a
Tree. |
| SNTChart
Extension of
ChartFrame with convenience methods for plot annotations. |
| StrahlerAnalyzer
Class to perform Horton-Strahler analysis on a
Tree. |
| TreeAnalyzer
Class for analysis of
Trees |
| TreeStatistics
Computes summary and descriptive statistics from univariate properties of
Paths and Nodes in a
Tree. |
| Class and Description |
|---|
| ColorMapper
Parent class for ColorMappers.
|
| NodeStatistics
Computes summary and descriptive statistics from a Collection of nodes.
|
| Class and Description |
|---|
| SNTTable
Extension of
DefaultGenericTable with (minor) scripting conveniences. |
| Class and Description |
|---|
| SNTChart
Extension of
ChartFrame with convenience methods for plot annotations. |
| SNTTable
Extension of
DefaultGenericTable with (minor) scripting conveniences. |
| TreeAnalyzer
Class for analysis of
Trees |
| Class and Description |
|---|
| ColorMapper
Parent class for ColorMappers.
|
| SNTChart
Extension of
ChartFrame with convenience methods for plot annotations. |
| TreeColorMapper
Class for color coding
Trees. |
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