| Class | Description |
|---|---|
| AnalyzerCmd |
Command for measuring Tree(s).
|
| BrainAnnotationCmd |
Command to perform distribution analysis of
BrainAnnotations on an
annotated Tree. |
| ChooseDataset | |
| ConvexHullCmd | |
| GraphAdapterMapperCmd | |
| GroupAnalyzerCmd |
Command for Comparing Groups of Tree(s).
|
| LocalThicknessCmd |
Convenience command for running Fiji's "Local Thickness" plugin from SNT
|
| MultiTreeMapperCmd |
Command for color coding trees according to their properties using
TreeColorMapper with options to display result in Viewer2D
and Viewer3D |
| PathAnalyzerCmd |
Command for measuring Paths in isolation.
|
| PathMatcherCmd |
Command for matching Paths across time-points (time-lapse analysis).
|
| PathOrderAnalysisCmd |
Command to perform
Path Ordering analysis on a
Tree. |
| PathSpineAnalysisCmd |
Command for obtaining plots pertaining to spine/varicosity counts
|
| PathTimeAnalysisCmd |
Command for obtaining 'time-profiles' of Paths (time-lapse analysis).
|
| PlotterCmd |
Implements Reconstruction Plotter, a command wrapper for interactively
plotting trees using
Viewer2D |
| ROIExporterCmd |
Command providing a GUI for
RoiConverter and allowing export of
Paths to the IJ1 ROI Manager. |
| ShollAnalysisBulkTreeCmd |
A modified version of
ShollAnalysisTreeCmd for Bulk Sholl Analysis. |
| ShollAnalysisImgCmd |
Implements the Analyze:Sholl:Sholl Analysis (From Image)...
|
| ShollAnalysisPrefsCmd |
Implements the "Sholl Options" command
|
| ShollAnalysisTreeCmd |
Implements SNT's commands for Sholl Analysis of
Trees. |
| SkeletonConverterCmd |
Command providing a GUI for
SkeletonConverter |
| SkeletonizerCmd |
Convenience command for converting Paths into skeleton images
|
| SpineExtractorCmd |
Command for obtaining spine/varicosity counts from multi-point ROIs
|
| StrahlerCmd |
Command to perform Horton-Strahler analysis on a
Tree. |
| TreeMapperCmd |
Command for color coding trees according to their properties using
TreeColorMapper with options to display result in Viewer2D
and Viewer3D |
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