| Package | Description |
|---|---|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.plugin |
SNT add-ons as IJ2 commands
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| Modifier and Type | Method and Description |
|---|---|
SNTChart |
NodeStatistics.getAnnotatedFrequencyHistogram(int depth,
String hemisphere,
Tree tree)
Retrieves the histogram of count frequencies across brain areas of the
specified ontology level across the specified hemisphere.
|
SNTChart |
NodeStatistics.getAnnotatedHistogram()
Retrieves the histogram of count frequencies across brain areas.
|
SNTChart |
NodeStatistics.getAnnotatedHistogram(int depth)
Retrieves the histogram of count frequencies across brain areas of the
specified ontology level.
|
SNTChart |
TreeStatistics.getAnnotatedLengthHistogram()
Retrieves the of cable length frequencies across brain areas.
|
SNTChart |
TreeStatistics.getAnnotatedLengthHistogram(int depth)
Retrieves the histogram of cable length frequencies across brain areas of the
specified ontology level.
|
SNTChart |
TreeStatistics.getAnnotatedLengthHistogram(int depth,
String hemisphere)
Retrieves the histogram of cable length frequencies across brain areas of the
specified ontology level across the specified hemisphere.
|
protected SNTChart |
TreeStatistics.getAnnotatedLengthHistogram(Map<BrainAnnotation,Double> map,
int depth,
String secondaryLabel) |
protected SNTChart |
TreeStatistics.getAnnotatedLengthsByHemisphereHistogram(int depth) |
SNTChart |
GroupedTreeStatistics.getBoxPlot(String measurement)
Assembles a Box and Whisker Plot for the specified measurement (cell morphometry).
|
SNTChart |
GroupedTreeStatistics.getBoxPlot(String feature,
Collection<BrainAnnotation> annotations)
Assembles a Box and Whisker Plot for the specified feature (absolute
measurements).
|
SNTChart |
GroupedTreeStatistics.getBoxPlot(String feature,
Collection<BrainAnnotation> annotations,
double cutoff,
boolean normalize)
Assembles a Box and Whisker Plot for the specified feature.
|
SNTChart |
TreeStatistics.getHistogram(String metric)
Retrieves the histogram of relative frequencies histogram for a univariate
measurement.
|
SNTChart |
NodeStatistics.getHistogram(String metric)
Gets the relative frequencies histogram for a univariate measurement.
|
SNTChart |
MultiTreeStatistics.getHistogram(String metric) |
SNTChart |
GroupedTreeStatistics.getHistogram(String measurement)
Gets the relative frequencies histogram for a univariate measurement.
|
protected SNTChart |
TreeStatistics.getHistogram(String normMeasurement,
sc.fiji.snt.analysis.AnalysisUtils.HistogramDatasetPlus datasetPlus) |
| Modifier and Type | Method and Description |
|---|---|
void |
SNTChart.applyStyle(SNTChart template) |
| Modifier and Type | Method and Description |
|---|---|
SNTChart |
StrahlerCmd.getChart()
A variant of
StrahlerCmd.getCategoryChart() that returns the Strahler chart as a
SNTChart object. |
SNTChart |
PathOrderAnalysisCmd.getChart()
A variant of
PathOrderAnalysisCmd.getCategoryChart() that returns the Analysis chart as a
SNTChart object. |
| Modifier and Type | Method and Description |
|---|---|
SNTChart |
Viewer2D.getChart()
Gets the current viewer as a
SNTChart object |
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