| Modifier and Type | Method and Description |
|---|---|
Illumination |
ViewSetup.getIllumination()
Get the
Illumination direction. |
| Modifier and Type | Method and Description |
|---|---|
Map<Integer,Illumination> |
SequenceDescription.getAllIlluminations()
Get all
Illuminations occurring in any setups. |
static HashMap<Integer,Illumination> |
ViewSetups.getAllIlluminations(Collection<? extends ViewSetup> setups) |
List<Illumination> |
SequenceDescription.getAllIlluminationsOrdered()
Get all
Illuminations occurring in any setup, ordered by illumination id. |
| Modifier and Type | Method and Description |
|---|---|
int |
Illumination.compareTo(Illumination o)
Compares the
ids. |
protected void |
ViewSetup.setIllumination(Illumination illumination)
Set the
Illumination direction. |
| Constructor and Description |
|---|
ViewSetup(int id,
String name,
Dimensions size,
VoxelDimensions voxelSize,
Channel channel,
Angle angle,
Illumination illumination)
TODO
|
ViewSetup(int id,
String name,
Dimensions size,
VoxelDimensions voxelSize,
Tile tile,
Channel channel,
Angle angle,
Illumination illumination)
TODO
|
| Modifier and Type | Method and Description |
|---|---|
protected String[] |
Duplicate_Transformation.assembleIllums(List<Illumination> illums) |
| Modifier and Type | Method and Description |
|---|---|
List<Illumination> |
LoadParseQueryXML.getIlluminationsToProcess() |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<Illumination> |
SpimData2.getAllIlluminationsForChannelTimepointSorted(SpimData data,
Collection<? extends ViewId> viewIds,
Channel c,
TimePoint t) |
static ArrayList<Illumination> |
SpimData2.getAllIlluminationsSorted(SpimData data,
Collection<? extends ViewId> viewIds) |
| Modifier and Type | Method and Description |
|---|---|
static ViewId |
SpimData2.getViewId(SequenceDescription seqDesc,
TimePoint t,
Channel c,
Angle a,
Illumination i) |
static ViewSetup |
SpimData2.getViewSetup(List<? extends ViewSetup> list,
Channel c,
Angle a,
Illumination i) |
| Modifier and Type | Method and Description |
|---|---|
protected static Illumination |
LegacySlideBook6ImgLoader.getIllumination(BasicViewDescription<?> vd) |
protected static Illumination |
LegacyLightSheetZ1ImgLoader.getIllumination(BasicViewDescription<?> vd) |
| Modifier and Type | Method and Description |
|---|---|
static String |
FusionHelper.getIllumName(List<Illumination> illumsToProcess) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
ProcessForDeconvolution.fuseStacksAndGetPSFs(TimePoint timepoint,
Channel channel,
ImgFactory<FloatType> imgFactory,
int osemIndex,
double osemspeedup,
ProcessForDeconvolution.WeightType weightType,
HashMap<Channel,ChannelPSF> extractPSFLabels,
long[] psfSize,
HashMap<Channel,ArrayList<Pair<Pair<Angle,Illumination>,String>>> psfFiles,
boolean transformLoadedPSFs)
Fuses one stack, i.e.
|
protected static File |
ExtractPSF.getFileNameForViewId(ViewDescription vd,
ArrayList<Pair<Pair<Angle,Illumination>,String>> filenames) |
static <T extends RealType<T> & NativeType<T>> |
ExtractPSF.loadAndTransformPSFs(ArrayList<Pair<Pair<Angle,Illumination>,String>> filenames,
ArrayList<ViewDescription> viewDesc,
T type,
HashMap<ViewId,AffineTransform3D> models) |
| Modifier and Type | Method and Description |
|---|---|
static Set<Illumination> |
XMLTIFFImgTitler.getAllIlluminations(List<ViewSetup> viewSetups) |
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