| Package | Description |
|---|---|
| mpicbg.imglib.algorithm.scalespace | |
| mpicbg.spim.registration.detection | |
| mpicbg.stitching | |
| process | |
| script.imglib.analysis | |
| spim.process.interestpointdetection |
| Modifier and Type | Field and Description |
|---|---|
protected ArrayList<DifferenceOfGaussianPeak<B>> |
DifferenceOfGaussian.peaks |
| Modifier and Type | Method and Description |
|---|---|
DifferenceOfGaussianPeak<T> |
DifferenceOfGaussianPeak.copy() |
DifferenceOfGaussianPeak<T>[] |
DifferenceOfGaussianPeak.createArray(int n) |
DifferenceOfGaussianPeak<T> |
DifferenceOfGaussianPeak.getEntry() |
| Modifier and Type | Method and Description |
|---|---|
ArrayList<DifferenceOfGaussianPeak<B>> |
DifferenceOfGaussian.findPeaks(Image<B> laPlace) |
ArrayList<DifferenceOfGaussianPeak<T>> |
AdaptiveNonMaximalSuppression.getClearedList()
Creates a new
ArrayList that only contains all DifferenceOfGaussianPeaks that are valid. |
List<DifferenceOfGaussianPeak<T>> |
SubpixelLocalization.getDoGPeaks() |
ArrayList<DifferenceOfGaussianPeak<B>> |
ScaleSpace.getPeaks() |
ArrayList<DifferenceOfGaussianPeak<B>> |
DifferenceOfGaussian.getPeaks() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
SubpixelLocalization.analyzePeak(DifferenceOfGaussianPeak<T> peak) |
float |
DifferenceOfGaussianPeak.distanceTo(DifferenceOfGaussianPeak<T> other) |
protected boolean |
SubpixelLocalization.handleFailure(DifferenceOfGaussianPeak<T> peak,
String error) |
protected void |
AdaptiveNonMaximalSuppression.invalidateLowerEntries(ArrayList<DifferenceOfGaussianPeak<T>> extrema,
DifferenceOfGaussianPeak<T> centralPeak) |
| Modifier and Type | Method and Description |
|---|---|
protected void |
AdaptiveNonMaximalSuppression.invalidateLowerEntries(ArrayList<DifferenceOfGaussianPeak<T>> extrema,
DifferenceOfGaussianPeak<T> centralPeak) |
void |
SubpixelLocalization.setDoGPeaks(List<DifferenceOfGaussianPeak<T>> peaks) |
| Constructor and Description |
|---|
AdaptiveNonMaximalSuppression(List<DifferenceOfGaussianPeak<T>> detections,
double radius)
Performs adaptive non maximal suppression in the local neighborhood of each detection, seperately
for minima and maxima.
|
SubpixelLocalization(Image<T> laPlacian,
List<DifferenceOfGaussianPeak<T>> peaks) |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
float initialSigma,
float minPeakValue,
float minInitialPeakValue) |
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float sigma1,
float sigma2,
float minPeakValue,
float minInitialPeakValue,
boolean findMax,
boolean findMin,
int debugLevel) |
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float initialSigma,
float minPeakValue,
float minInitialPeakValue,
int stepsPerOctave,
boolean findMax,
boolean findMin,
int debugLevel) |
| Modifier and Type | Class and Description |
|---|---|
class |
Peak |
| Modifier and Type | Field and Description |
|---|---|
protected DifferenceOfGaussianPeak<FloatType> |
Particle.peak |
| Modifier and Type | Method and Description |
|---|---|
DifferenceOfGaussianPeak<FloatType> |
Particle.getPeak() |
| Modifier and Type | Method and Description |
|---|---|
protected static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.computeDoG(Image<FloatType> image,
float sigma1,
float sigma2,
boolean lookForMaxima,
boolean lookForMinima,
float threshold,
int localization,
int iterations,
double[] sigmaGuess,
int[] region) |
static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<FloatType> img,
OutOfBoundsStrategyFactory<FloatType> oobsFactory,
float imageSigma,
float sigma1,
float sigma2,
float minPeakValue,
float minInitialPeakValue,
boolean findMax,
boolean findMin,
int localization,
int iterations,
double[] sigma,
int[] region,
int debugLevel) |
static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.extractCandidates(ij.ImagePlus imp,
int channel,
int timepoint,
DescriptorParameters params,
float[] minmax) |
protected static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.filterForROI(Roi roi,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks) |
protected static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.filterForROI(Roi roi,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks,
Model<?> model) |
| Modifier and Type | Method and Description |
|---|---|
static Vector<ComparePair> |
Matching.descriptorMatching(ArrayList<ArrayList<DifferenceOfGaussianPeak<FloatType>>> peaks,
int numImages,
DescriptorParameters params,
float zStretching) |
protected static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.filterForROI(Roi roi,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks) |
protected static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
Matching.filterForROI(Roi roi,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks,
Model<?> model) |
protected static ArrayList<PointMatch> |
Matching.getCorrespondenceCandidates(double nTimesBetter,
Matcher matcher,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks1,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks2,
Model<?> model,
int dimensionality,
float zStretching1,
float zStretching2,
String explanation) |
protected static ArrayList<PointMatch> |
Matching.getCorrespondenceCandidates(double nTimesBetter,
Matcher matcher,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks1,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks2,
Model<?> model,
int dimensionality,
float zStretching1,
float zStretching2,
String explanation) |
protected static Model<?> |
Matching.pairwiseMatching(ArrayList<PointMatch> finalInliers,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks1,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks2,
float zStretching1,
float zStretching2,
DescriptorParameters params,
String explanation) |
protected static Model<?> |
Matching.pairwiseMatching(ArrayList<PointMatch> finalInliers,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks1,
ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks2,
float zStretching1,
float zStretching2,
DescriptorParameters params,
String explanation) |
protected static int |
Matching.performIteration(ArrayList<InvertibleBoundable> lastModels,
ArrayList<ArrayList<DifferenceOfGaussianPeak<FloatType>>> peaksComplete,
int numImages,
DescriptorParameters params,
float zStretching)
Computes one iteration and updates the lastModels ArrayList with the new models
|
protected static int[] |
Matching.removeInvalidAndCollectStatistics(ArrayList<DifferenceOfGaussianPeak<FloatType>> peaks) |
| Constructor and Description |
|---|
Particle(int id,
DifferenceOfGaussianPeak<FloatType> peak,
float zStretching) |
PeakSort(DifferenceOfGaussianPeak<FloatType> peak) |
| Modifier and Type | Method and Description |
|---|---|
List<DifferenceOfGaussianPeak<FloatType>> |
DoGPeaks.getPeaks()
Get all peaks as
DifferenceOfGaussianPeak instances. |
| Modifier and Type | Method and Description |
|---|---|
ArrayList<DifferenceOfGaussianPeak<FloatType>> |
DifferenceOfGaussianNewPeakFinder.findPeaks(Image<FloatType> laPlace) |
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