| Package | Description |
|---|---|
| fsalign | |
| ini.trakem2.display | |
| ini.trakem2.imaging | |
| mpicbg.trakem2.align | |
| mpicbg.trakem2.align.concurrent |
| Modifier and Type | Field and Description |
|---|---|
protected Filter<Patch> |
FSAlignListener.patchFilter |
| Modifier and Type | Method and Description |
|---|---|
Bureaucrat |
Display.applyPatchTask(List<Patch> patches,
String taskTitle,
Operation<Boolean,Patch> task,
Filter<Patch> filter)
Meant for tasks that require setting an undo and regenerating mipmaps.
|
| Modifier and Type | Method and Description |
|---|---|
static Bureaucrat |
Blending.blend(List<Layer> layers,
boolean respect_current_mask,
Filter<Patch> filter) |
static void |
Blending.blendLayerWise(List<Layer> layers,
boolean respect_current_mask,
Filter<Patch> filter) |
| Modifier and Type | Method and Description |
|---|---|
static void |
Align.alignLayersLinearly(List<Layer> layers,
int numThreads,
Filter<Patch> filter)
Align a range of layers by accumulating pairwise alignments of contiguous layers.
|
static void |
AlignLayersTask.alignLayersLinearlyJob(LayerSet layerSet,
int first,
int last,
boolean propagateTransform,
Rectangle fov,
Filter<Patch> filter) |
static void |
AlignLayersTask.alignLayersNonLinearlyJob(LayerSet layerSet,
int first,
int last,
boolean propagateTransform,
Rectangle fov,
Filter<Patch> filter) |
protected static void |
RegularizedAffineLayerAlignment.applyTransformToLayer(Layer layer,
AffineTransform affine,
Filter<Patch> filter) |
protected static void |
ElasticLayerAlignment.applyTransformToLayer(Layer layer,
CoordinateTransform mlt,
Filter<Patch> filter) |
void |
ElasticLayerAlignment.exec(ElasticLayerAlignment.Param param,
Project project,
List<Layer> layerRange,
Set<Layer> fixedLayers,
Set<Layer> emptyLayers,
Rectangle box,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Filter<Patch> filter) |
void |
RegularizedAffineLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
ElasticLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
RegularizedAffineLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref,
boolean propagateTransform,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
ElasticLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref,
boolean propagateTransform,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
RegularizedAffineLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref1,
int ref2,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
ElasticLayerAlignment.exec(LayerSet layerSet,
int firstIn,
int lastIn,
int ref1,
int ref2,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
RegularizedAffineLayerAlignment.exec(List<Layer> layerRange,
Set<Layer> fixedLayers,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
ElasticLayerAlignment.exec(Project project,
List<Layer> layerRange,
Set<Layer> fixedLayers,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Rectangle fov,
Filter<Patch> filter)
Stateful.
|
void |
RegularizedAffineLayerAlignment.exec(RegularizedAffineLayerAlignment.Param param,
List<Layer> layerRange,
Set<Layer> fixedLayers,
Set<Layer> emptyLayers,
Rectangle box,
boolean propagateTransformBefore,
boolean propagateTransformAfter,
Filter<Patch> filter) |
protected static void |
AlignmentUtils.extractAndSaveLayerFeatures(List<Layer> layerRange,
Rectangle box,
double scale,
Filter<Patch> filter,
FloatArray2DSIFT.Param siftParam,
boolean clearCache,
int numThreads)
Extract SIFT features and save them into the project folder.
|
static List<Patch> |
AlignmentUtils.filterPatches(Layer layer,
Filter<Patch> filter) |
| Constructor and Description |
|---|
BlockMatchPairCallable(Triple<Integer,Integer,AbstractModel<?>> pair,
List<Layer> layerRange,
boolean layer1Fixed,
boolean layer2Fixed,
Filter<Patch> filter,
ElasticLayerAlignment.Param param,
Collection<? extends Point> sourcePoints1,
Collection<? extends Point> sourcePoints2,
Rectangle box) |
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