Uses of Class ij3d.Content (Fiji Javadocs 0-SNAPSHOT API)

Packages that use Content
Package	Description
ij3d
ij3d.behaviors
ij3d.gui
ini.trakem2.display
isosurface
octree
orthoslice
sc.fiji.snt	SNT core classes
surfaceplot
voltex
volumeCalculator

Uses of Content in ij3d

Methods in ij3d that return Content
Modifier and Type	Method and Description
`Content`	Image3DUniverse.`addContent(Content c)` Add the specified Content to the universe.
`Content`	Image3DUniverse.`addContent(ij.ImagePlus image, Color3f color, String name, int thresh, boolean[] channels, int resf, int type)` Add the specified image as a new Content to the universe.
`Content`	Image3DUniverse.`addContent(ij.ImagePlus image, int type)` Add the specified image as a new Content to the universe.
`Content`	Image3DUniverse.`addContent(ij.ImagePlus image, int type, int res)` Add the specified image as a new Content to the universe.
`Content`	Image3DUniverse.`addCustomMesh(CustomMesh mesh, String name)` Add a custom mesh to the universe.
`Content`	Image3DUniverse.`addCustomMesh(CustomMultiMesh mesh, String name)` Add a CustomMultiMesh to the universe.
`Content`	Image3DUniverse.`addIcospheres(List<Point3f> points, Color3f color, int subdivisions, float radius, String name)` At every `Point3f` in @param points, place an icosphere created with @param subdivisions and @param radius.
`Content`	Image3DUniverse.`addLineMesh(List<Point3f> mesh, Color3f color, String name, boolean strips)` Add a custom mesh, in particular a line mesh (a set of lines in 3D) to the universe.
`Content`	Image3DUniverse.`addMesh(ij.ImagePlus img)` Add a new image as a content, displaying it as an isosurface.
`Content`	Image3DUniverse.`addMesh(ij.ImagePlus image, Color3f color, String name, int threshold, boolean[] channels, int resamplingF)` Add a new image as a content, displaying it as an iso-surface.
`Content`	Image3DUniverse.`addMesh(ij.ImagePlus img, int res)` Add a new image as a content, displaying it as an isosurface.
`Content`	Image3DUniverse.`addMesh(List<Point3f> mesh, Color3f color, String name, int threshold)` Deprecated. This method will not be supported in the future. Use addTriangleMesh instead.
`Content`	Image3DUniverse.`addMesh(List mesh, Color3f color, String name, float scale, int threshold)` Deprecated. This method will not be supported in the future. The specified 'scale' will be ignored, and the applied scale will be calculated automatically from the minimum and maximum coordinates of the specified mesh. Use addTriangleMesh instead.
`Content`	Image3DUniverse.`addOrthoslice(ij.ImagePlus image)` Add a new image as a content, displaying it as orthoslices.
`Content`	Image3DUniverse.`addOrthoslice(ij.ImagePlus image, Color3f color, String name, int thresh, boolean[] channels, int resamplingF)` Add a new image as a content, displaying it as orthoslices.
`Content`	Image3DUniverse.`addOrthoslice(ij.ImagePlus image, int res)` Add a new image as a content, displaying it as orthoslices.
`Content`	Image3DUniverse.`addPointMesh(List<Point3f> mesh, Color3f color, float ptsize, String name)` Add a custom mesh, in particular a point mesh, to the universe.
`Content`	Image3DUniverse.`addPointMesh(List<Point3f> mesh, Color3f color, String name)` Add a custom mesh, in particular a point mesh, to the universe.
`Content`	Image3DUniverse.`addQuadMesh(List<Point3f> mesh, Color3f color, String name)` Add a custom mesh, in particular a mesh consisting of quads, to the universe.
`Content`	Image3DUniverse.`addSurfacePlot(ij.ImagePlus image)` Add a new image as a content, displaying it as a 2D surface plot.
`Content`	Image3DUniverse.`addSurfacePlot(ij.ImagePlus image, Color3f color, String name, int thresh, boolean[] channels, int resamplingF)` Add a new image as a content, displaying it as a 2D surface plot.
`Content`	Image3DUniverse.`addSurfacePlot(ij.ImagePlus image, int res)` Add a new image as a content, displaying it as a 2D surface plot.
`Content`	Image3DUniverse.`addTriangleMesh(List<Point3f> mesh, Color3f color, String name)` Add a custom mesh, in particular a triangle mesh, to the universe.
`Content`	Image3DUniverse.`addTriangleMesh(List<Point3f> mesh, List<Color3f> colors, String name)` Add a custom mesh, in particular a triangle mesh, to the universe.
`Content`	Image3DUniverse.`addVoltex(ij.ImagePlus image)` Add a new image as a content, displaying it as a volume rendering.
`Content`	Image3DUniverse.`addVoltex(ij.ImagePlus image, Color3f color, String name, int thresh, boolean[] channels, int resamplingF)` Add a new image as a content, displaying it as a volume rendering.
`Content`	Image3DUniverse.`addVoltex(ij.ImagePlus image, int res)` Add a new image as a content, displaying it as a volume rendering.
`Content`	Image3DUniverse.`createContent(CustomMesh mesh, String name)` Create a Content object from the mesh.
`static Content`	ContentCreator.`createContent(CustomMesh mesh, String name)`
`static Content`	ContentCreator.`createContent(CustomMesh mesh, String name, int tp)`
`Content`	Image3DUniverse.`createContent(CustomMultiMesh node, String name)`
`static Content`	ContentCreator.`createContent(CustomMultiMesh node, String name)`
`static Content`	ContentCreator.`createContent(CustomMultiMesh node, String name, int tp)`
`static Content`	ContentCreator.`createContent(String name, File file, int type, int resf, int tp, Color3f color, int thresh, boolean[] channels)`
`static Content`	ContentCreator.`createContent(String name, ij.ImagePlus[] images, int type, int resf, int tp, Color3f color, int thresh, boolean[] channels)`
`static Content`	ContentCreator.`createContent(String name, ij.ImagePlus image, int type)`
`static Content`	ContentCreator.`createContent(String name, ij.ImagePlus image, int type, int resf)`
`static Content`	ContentCreator.`createContent(String name, ij.ImagePlus image, int type, int resf, int tp)`
`static Content`	ContentCreator.`createContent(String name, ij.ImagePlus image, int type, int resf, int tp, Color3f color, int thresh, boolean[] channels)`
`Content`	Image3DUniverse.`getContent(String name)` Returns the Content with the specified name.
`Content`	Image3DUniverse.`getSelected()` Returns the selected Content, or null if none is selected.
`abstract Content`	DefaultUniverse.`getSelected()`
`Content`	SaveSession.`readContent(BufferedReader in)`

Methods in ij3d that return types with arguments of type Content
Modifier and Type	Method and Description
`Collection<Future<Content>>`	Image3DUniverse.`addContentLater(Collection<Content> cc)` Add the specified collection of Content to the universe.
`Future<Content>`	Image3DUniverse.`addContentLater(Content c)` Add the specified Content to the universe.
`Collection<Future<Content>>`	Image3DUniverse.`addContentLater(String file)`

Methods in ij3d with parameters of type Content
Modifier and Type	Method and Description
`void`	ViewAdjuster.`add(Content c)` Add another Content which should be completely visible in the canvas.
`Content`	Image3DUniverse.`addContent(Content c)` Add the specified Content to the universe.
`Future<Content>`	Image3DUniverse.`addContentLater(Content c)` Add the specified Content to the universe.
`void`	Executer.`adjustLUTs(Content c)`
`void`	Image3DUniverse.`adjustView(Content c)` Fit the specified content optimally into the canvas.
`void`	Image3DUniverse.`adjustView(Content c, int dir)` Fit the specified content optimally into the canvas.
`void`	Executer.`applySurfaceColors(Content c)`
`void`	Executer.`applyTransform(Content c)`
`void`	Image3DUniverse.`centerSelected(Content c)` Select the view at the selected Content.
`void`	Executer.`centerSelected(Content c)`
`void`	Executer.`changeChannels(Content c)`
`void`	Executer.`changeColor(Content c)`
`void`	Executer.`changePointColor(Content c)`
`void`	Executer.`changePointSize(Content c)`
`void`	Executer.`changeSlices(Content c)`
`void`	Executer.`changeThreshold(Content c)`
`void`	Executer.`changeTransparency(Content c)`
`void`	UniverseListener.`contentAdded(Content c)`
`void`	RegistrationMenubar.`contentAdded(Content c)`
`void`	ImageWindow3D.`contentAdded(Content c)`
`void`	Image3DMenubar.`contentAdded(Content c)`
`void`	ContentInstant.`contentAdded(Content c)`
`void`	Content.`contentAdded(Content c)`
`void`	UniverseListener.`contentChanged(Content c)`
`void`	RegistrationMenubar.`contentChanged(Content c)`
`void`	ImageWindow3D.`contentChanged(Content c)`
`void`	Image3DMenubar.`contentChanged(Content c)`
`void`	ContentInstant.`contentChanged(Content c)`
`void`	Content.`contentChanged(Content c)`
`void`	Executer.`contentProperties(Content c)`
`void`	UniverseListener.`contentRemoved(Content c)`
`void`	RegistrationMenubar.`contentRemoved(Content c)`
`void`	ImageWindow3D.`contentRemoved(Content c)`
`void`	Image3DMenubar.`contentRemoved(Content c)`
`void`	ContentInstant.`contentRemoved(Content c)`
`void`	Content.`contentRemoved(Content c)`
`void`	UniverseListener.`contentSelected(Content c)`
`void`	RegistrationMenubar.`contentSelected(Content c)`
`void`	ImageWindow3D.`contentSelected(Content c)`
`void`	Image3DMenubar.`contentSelected(Content c)`
`void`	ContentInstant.`contentSelected(Content c)`
`void`	Content.`contentSelected(Content c)`
`void`	Executer.`delete(Content c)`
`void`	Executer.`displayAs(Content c, int type)`
`void`	RegistrationMenubar.`doRegistration(Content templ, Content model)`
`void`	Executer.`exportTransformed(Content c)`
`void`	Executer.`fill(Content c)`
`void`	DefaultUniverse.`fireContentAdded(Content c)` Invokes the contentAdded() method of all registered UniverseListeners.
`void`	DefaultUniverse.`fireContentChanged(Content c)` Invokes the contentChanged() method of all registered UniverseListeners.
`void`	DefaultUniverse.`fireContentRemoved(Content c)` Invokes the contentRemoved() method of all registered UniverseListeners.
`void`	DefaultUniverse.`fireContentSelected(Content c)` Invokes the contentSelected() method of all registered UniverseListeners.
`void`	Executer.`fitViewToContent(Content c)`
`void`	Executer.`loadPointList(Content c)`
`void`	Image3DUniverse.`recalculateGlobalMinMax(Content c)` If the specified Content is the only content in the universe, global minimum, maximum and center point are set accordingly to this Content.
`void`	Executer.`resetTransform(Content c)`
`void`	Executer.`savePointList(Content c)`
`void`	Executer.`saveTransform(Content c)`
`void`	Image3DUniverse.`select(Content c)` Select the specified Content.
`void`	Executer.`setLocked(Content c, boolean b)`
`void`	Executer.`setSaturatedVolumeRendering(Content c, boolean b)`
`void`	Executer.`setShaded(Content c, boolean b)`
`void`	Executer.`setTransform(Content c)`
`void`	Executer.`showBoundingBox(Content c, boolean b)`
`void`	Executer.`showContent(Content c, boolean b)`
`void`	Executer.`showCoordinateSystem(Content c, boolean b)`
`void`	Executer.`showPointList(Content c, boolean b)`
`void`	Executer.`smoothMesh(Content c)`
`void`	Executer.`updateVolume(Content c)`

Method parameters in ij3d with type arguments of type Content
Modifier and Type	Method and Description
`void`	ViewAdjuster.`addCenterOf(Iterable<Content> contents)` Make sure that the average center of all contents is visible in the canvas.
`Collection<Future<Content>>`	Image3DUniverse.`addContentLater(Collection<Content> cc)` Add the specified collection of Content to the universe.
`void`	Image3DUniverse.`adjustView(Iterable<Content> contents)` Fit the specified contents optimally into the canvas.
`void`	Image3DUniverse.`adjustView(Iterable<Content> contents, int dir)` Fit the specified contents optimally into the canvas.

Uses of Content in ij3d.behaviors

Methods in ij3d.behaviors that return Content
Modifier and Type	Method and Description
`Content`	Picker.`getPickedContent(int x, int y)` Get the Content at the specified canvas position

Methods in ij3d.behaviors with parameters of type Content
Modifier and Type	Method and Description
`void`	Picker.`addPoint(Content c, int x, int y)` Adds a landmark point specfied by the canvas position
`void`	Picker.`addPoint(Content c, MouseEvent e)` Adds a landmark point specfied by the position of the MouseEvent.
`void`	Picker.`deletePoint(Content c, MouseEvent e)` Deletes a landmark point of the specified Content at the given mouse position
`List<Map.Entry<Point3d,Float>>`	Picker.`getPickPointColumn(Content c, int x, int y)`
`Point3d`	Picker.`getPickPointGeometry(Content c, int x, int y)` Get the picked point, using geometry picking, for the specified canvas position.
`Point3d`	Picker.`getPickPointGeometry(Content c, MouseEvent e)` Get the picked point, using geometry picking, for the specified canvas position.
`Point3d`	Picker.`getPickPointGeometry(Content c, Point3d origin, Vector3d dir)` Get the picked point using geometry picking.
`void`	ContentTransformer.`init(Content c, int x, int y)` This method should be called to initiate a new transformation, e.g.
`void`	Picker.`movePoint(Content c, MouseEvent e)` Moves the picked landmark point to the position specified by the MouseEvent.

Uses of Content in ij3d.gui

Methods in ij3d.gui that return Content
Modifier and Type	Method and Description
`Content`	ContentCreatorDialog.`showDialog(Image3DUniverse univ, ij.ImagePlus imp, File fi)`

Uses of Content in ini.trakem2.display

Methods in ini.trakem2.display that return Content
Modifier and Type	Method and Description
`Content`	Display3D.VectorStringContent.`asContent(Display3D d3d)`
`static Content`	Display3D.`getProfileContent(Displayable d)` Checks if the given Displayable is a Profile, and tries to find a possible Content object in the Image3DUniverse of its LayerSet according to the title as created from its profile_list ProjectThing.

Methods in ini.trakem2.display that return types with arguments of type Content
Modifier and Type	Method and Description
`Future<Collection<Future<Content>>>`	Display3D.`addContent(Collection<Content> col)`
`Future<Content>`	Display3D.`addContent(Content c)`
`static Future<Content>`	Display3D.`addFatPoint(String title, LayerSet ls, double wx, double wy, double wz, double wr, Color color)` Expects uncalibrated wx,wy,wz, (i.e.
`static Future<Collection<Future<Content>>>`	Display3D.`addMesh(LayerSet ref_ls, VectorString3D vs, String title, Color color)` Creates a mesh from the given VectorString3D, which is unbound to any existing Pipe.
`static Future<Collection<Future<Content>>>`	Display3D.`addMesh(LayerSet ref_ls, VectorString3D vs, String title, Color color, double[] widths, float alpha)` Creates a mesh from the given VectorString3D, which is unbound to any existing Pipe.
`Callable<Content>`	Display3D.`createMesh(ProjectThing pt, Displayable displ, int resample)` Returns a function that returns a Content object.
`static Future<Collection<Future<Content>>>`	Display3D.`show(LayerSet ref_ls, Collection<Content> col)`
`static Future<Vector<Future<Content>>>`	Display3D.`show(ProjectThing pt)`
`static Future<Vector<Future<Content>>>`	Display3D.`show(ProjectThing pt, boolean wait, int resample)` Scan the `ProjectThing` children and assign the renderable ones to an existing `Display3D` for their `LayerSet`, or open a new one.
`static Future<Content>`	Display3D.`update(Displayable d)` Remake the mesh for the Displayable in a separate Thread, if it's included in a Display3D (otherwise returns null).

Methods in ini.trakem2.display with parameters of type Content
Modifier and Type	Method and Description
`Future<Content>`	Display3D.`addContent(Content c)`

Method parameters in ini.trakem2.display with type arguments of type Content
Modifier and Type	Method and Description
`Future<Collection<Future<Content>>>`	Display3D.`addContent(Collection<Content> col)`
`static Future<Collection<Future<Content>>>`	Display3D.`show(LayerSet ref_ls, Collection<Content> col)`

Uses of Content in isosurface

Methods in isosurface with parameters of type Content
Modifier and Type	Method and Description
`static Set<CustomTriangleMesh>`	SmoothControl.`findMeshes(Content content)`

Constructors in isosurface with parameters of type Content
Constructor and Description
`MeshGroup(Content c)`

Uses of Content in octree

Methods in octree with parameters of type Content
Modifier and Type	Method and Description
`void`	VolumeOctree.`contentAdded(Content c)`
`void`	VolumeOctree.`contentChanged(Content c)`
`void`	VolumeOctree.`contentRemoved(Content c)`
`void`	VolumeOctree.`contentSelected(Content c)`

Uses of Content in orthoslice

Constructors in orthoslice with parameters of type Content
Constructor and Description
`MultiOrthoGroup(Content c)` Construct a MultiOrthoGroup from the given Content.
`OrthoGroup(Content c)` Construct a OrthoGroup from the given Content.

Uses of Content in sc.fiji.snt

Methods in sc.fiji.snt that return Content
Modifier and Type	Method and Description
`protected Content`	Path.`addAsLinesTo3DViewer(Image3DUniverse univ, Color3f c, ij.ImagePlus colorImage)` Deprecated.
`Content`	Path.`addAsLinesTo3DViewer(Image3DUniverse univ, Color c, ij.ImagePlus colorImage)` Deprecated.
`Content`	Path.`addDiscsTo3DViewer(Image3DUniverse univ, Color3f c, ij.ImagePlus colorImage)` Deprecated.
`Content`	Path.`addDiscsTo3DViewer(Image3DUniverse univ, Color c, ij.ImagePlus colorImage)` Deprecated.

Methods in sc.fiji.snt with parameters of type Content
Modifier and Type	Method and Description
`void`	PathAndFillManager.`contentAdded(Content c)` Deprecated.
`void`	PathAndFillManager.`contentChanged(Content c)` Deprecated.
`void`	PathAndFillManager.`contentRemoved(Content c)` Deprecated.
`void`	PathAndFillManager.`contentSelected(Content c)` Deprecated.

Uses of Content in surfaceplot

Constructors in surfaceplot with parameters of type Content
Constructor and Description
`SurfacePlotGroup(Content c)` Constructs a surface plot for the given ContentInstant.

Uses of Content in voltex

Constructors in voltex with parameters of type Content
Constructor and Description
`VoltexGroup(Content c)` Initialize this VoltexGroup with the specified Content.

Uses of Content in volumeCalculator

Constructors in volumeCalculator with parameters of type Content
Constructor and Description
`CustomVolumeBehavior2(Image3DUniverse universe, Content content, Volumes volumes, VolumesPanel volumesPanel, ij.ImagePlus imagePlus, ij.ImagePlus originalImage)` Build an instance of CustomVolumeBehavior.

Uses of Classij3d.Content

Uses of Content in ij3d

Uses of Content in ij3d.behaviors

Uses of Content in ij3d.gui

Uses of Content in ini.trakem2.display

Uses of Content in isosurface

Uses of Content in octree

Uses of Content in orthoslice

Uses of Content in sc.fiji.snt

Uses of Content in surfaceplot

Uses of Content in voltex

Uses of Content in volumeCalculator

Uses of Class
ij3d.Content