| Package | Description |
|---|---|
| fiji.plugin.trackmate.action | |
| fiji.plugin.trackmate.detection | |
| fiji.plugin.trackmate.features | |
| fiji.plugin.trackmate.features.edges |
Package for the classes that compute scalar features on links between
spots (edges), such as instantaneous velocities, etc....
|
| fiji.plugin.trackmate.features.manual | |
| fiji.plugin.trackmate.features.spot | |
| fiji.plugin.trackmate.features.track | |
| fiji.plugin.trackmate.gui.components | |
| fiji.plugin.trackmate.providers | |
| fiji.plugin.trackmate.tracking | |
| fiji.plugin.trackmate.tracking.kalman | |
| fiji.plugin.trackmate.tracking.kdtree | |
| fiji.plugin.trackmate.tracking.overlap | |
| fiji.plugin.trackmate.tracking.sparselap | |
| fiji.plugin.trackmate.visualization | |
| fiji.plugin.trackmate.visualization.hyperstack | |
| fiji.plugin.trackmate.visualization.trackscheme |
| Modifier and Type | Interface and Description |
|---|---|
interface |
TrackMateActionFactory |
| Modifier and Type | Class and Description |
|---|---|
static class |
CaptureOverlayAction.Factory |
static class |
CloseGapsByLinearInterpolationAction.Factory |
static class |
ExportAllSpotsStatsAction.Factory |
static class |
ExportStatsTablesAction.Factory |
static class |
ExportTracksToXML.Factory |
static class |
ExtractTrackStackAction.ExtractTrackStackActionFactory |
static class |
IcyTrackExporter.Factory |
static class |
ISBIChallengeExporter.Factory |
static class |
LabelImgExporter.Factory |
static class |
MergeFileAction.Factory |
static class |
PlotNSpotsVsTimeAction.Factory |
static class |
RecomputeFeatureAction.Factory |
static class |
ResetSpotTimeFeatureAction.Factory |
static class |
SpotGaussianFitter.Factory |
static class |
TrackBranchAnalysis.Factory |
static class |
TrimNotVisibleAction.Factory |
| Modifier and Type | Interface and Description |
|---|---|
interface |
SpotDetectorFactory<T extends RealType<T> & NativeType<T>>
For detectors that process one time-point at a time, independently, and for
which we can therefore propose multithreading.
|
interface |
SpotDetectorFactoryBase<T extends RealType<T> & NativeType<T>>
Mother interface for detector factories.
|
interface |
SpotGlobalDetectorFactory<T extends RealType<T> & NativeType<T>>
Interface for detector factories that need to process all the time-points at
once.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DogDetectorFactory<T extends RealType<T> & NativeType<T>> |
class |
LabeImageDetectorFactory<T extends RealType<T> & NativeType<T>> |
class |
LogDetectorFactory<T extends RealType<T> & NativeType<T>> |
class |
ManualDetectorFactory<T extends RealType<T> & NativeType<T>> |
class |
MaskDetectorFactory<T extends RealType<T> & NativeType<T>> |
class |
ThresholdDetectorFactory<T extends RealType<T> & NativeType<T>> |
| Modifier and Type | Interface and Description |
|---|---|
interface |
FeatureAnalyzer |
| Modifier and Type | Interface and Description |
|---|---|
interface |
EdgeAnalyzer
Interface for analyzers that can compute scalar numerical features for an
edge of a TrackMate model.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractEdgeAnalyzer
Abstract class for edge analyzers that are local and not manual.
|
class |
DirectionalChangeAnalyzer |
class |
EdgeSpeedAnalyzer |
class |
EdgeTargetAnalyzer |
class |
EdgeTimeLocationAnalyzer |
| Modifier and Type | Class and Description |
|---|---|
class |
ManualEdgeColorAnalyzer |
class |
ManualSpotColorAnalyzerFactory<T extends RealType<T> & NativeType<T>> |
| Modifier and Type | Interface and Description |
|---|---|
interface |
SpotAnalyzerFactory<T extends RealType<T> & NativeType<T>>
Interface for factories that can generate a
SpotAnalyzer configured
to operate on a specific frame of a model. |
interface |
SpotAnalyzerFactoryBase<T extends RealType<T> & NativeType<T>>
Top-level interface for spot analyzer factories, both classical and
morphological.
|
interface |
SpotMorphologyAnalyzerFactory<T extends RealType<T> & NativeType<T>>
Special interface for spot analyzers that can compute feature values based on
the contour of spots.
|
| Modifier and Type | Class and Description |
|---|---|
class |
SpotContrastAndSNRAnalyzerFactory<T extends RealType<T> & NativeType<T>>
A factory for
SpotContrastAndSNRAnalyzers. |
class |
SpotFitEllipseAnalyzerFactory<T extends RealType<T> & NativeType<T>> |
class |
SpotIntensityMultiCAnalyzerFactory<T extends RealType<T> & NativeType<T>> |
class |
SpotShapeAnalyzerFactory<T extends RealType<T> & NativeType<T>> |
| Modifier and Type | Interface and Description |
|---|---|
interface |
TrackAnalyzer
Mother interface for the classes that can compute the feature of tracks.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractTrackAnalyzer
Abstract class for track analyzers that are local and not manual.
|
class |
TrackBranchingAnalyzer |
class |
TrackDurationAnalyzer |
class |
TrackIndexAnalyzer |
class |
TrackLocationAnalyzer |
class |
TrackMotilityAnalyzer |
class |
TrackSpeedStatisticsAnalyzer |
class |
TrackSpotQualityFeatureAnalyzer |
| Modifier and Type | Class and Description |
|---|---|
class |
ModuleChooserPanel<K extends TrackMateModule> |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractProvider<K extends TrackMateModule> |
| Modifier and Type | Interface and Description |
|---|---|
interface |
SpotTrackerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
LAPTrackerFactory
Base class for LAP-based trackers.
|
class |
ManualTrackerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
KalmanTrackerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
NearestNeighborTrackerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
OverlapTrackerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleSparseLAPTrackerFactory |
class |
SparseLAPTrackerFactory |
| Modifier and Type | Interface and Description |
|---|---|
interface |
ViewFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
HyperStackDisplayerFactory |
| Modifier and Type | Class and Description |
|---|---|
class |
TrackSchemeFactory |
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