Uses of Interface
org.janelia.saalfeldlab.n5.universe.metadata.N5Metadata

Packages that use N5Metadata

Package	Description
org.janelia.saalfeldlab.n5.universe
org.janelia.saalfeldlab.n5.universe.metadata
org.janelia.saalfeldlab.n5.universe.metadata.axes
org.janelia.saalfeldlab.n5.universe.metadata.canonical
org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff
org.janelia.saalfeldlab.n5.universe.translation

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe

Methods in org.janelia.saalfeldlab.n5.universe that return N5Metadata

Modifier and Type	Method and Description
N5Metadata	N5TreeNode.getMetadata()
static N5Metadata	N5MetadataUtils.parseMetadata(org.janelia.saalfeldlab.n5.N5Reader n5, String group)
static N5Metadata	N5MetadataUtils.parseMetadata(org.janelia.saalfeldlab.n5.N5Reader n5, String group, boolean parseWholeTree)
static N5Metadata	N5MetadataUtils.parseMetadata(org.janelia.saalfeldlab.n5.N5Reader n5, String group, boolean parseWholeTree, ExecutorService exec, List<N5MetadataParser<?>> parsers, List<N5MetadataParser<?>> groupParsers)

Methods in org.janelia.saalfeldlab.n5.universe with parameters of type N5Metadata

Modifier and Type	Method and Description
void	N5TreeNode.setMetadata(N5Metadata metadata)

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata

Classes in org.janelia.saalfeldlab.n5.universe.metadata with type parameters of type N5Metadata

Modifier and Type	Class and Description
class	GenericMetadataGroup<T extends N5Metadata>
interface	N5MetadataGroup<T extends N5Metadata> Base interfaces for metadata corresponding to an n5 group.
interface	N5MetadataParser<T extends N5Metadata> Interface for reading metadata from N5 containers.
interface	N5MetadataWriter<T extends N5Metadata> Interface for writing metadata to an N5 container.

Subinterfaces of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata

Modifier and Type	Interface and Description
interface	IntensityMetadata Interface for metadata that describes
interface	N5DatasetMetadata Interface for metadata that corresponds to an N5 dataset.
interface	N5MetadataGroup<T extends N5Metadata> Base interfaces for metadata corresponding to an n5 group.
interface	N5SpatialDatasetMetadata
interface	SpatialMetadata Interface for metadata describing how spatial data are oriented in physical space.
interface	SpatialMetadataGroup<T extends SpatialMetadata> Interface for a metadata whose children are each SpatialMetadata, and is itslef SpatialMetadata.

Classes in org.janelia.saalfeldlab.n5.universe.metadata that implement N5Metadata

Modifier and Type	Class and Description
class	AbstractN5DatasetMetadata Abstract class for single-scale or multi-scale N5 metadata.
class	AbstractN5Metadata Abstract class for single-scale or multi-scale N5 metadata.
class	AbstractN5SpatialDatasetMetadata Abstract class for single-scale or multi-scale N5 metadata.
class	GenericMetadataGroup<T extends N5Metadata>
class	MultiscaleMetadata<T extends N5DatasetMetadata & SpatialMetadata> An abstract class for a SpatialMetadataGroup whose children contain the same data sampled at different resolutions.
class	N5CosemMetadata Janelia COSEM's implementation of a N5SingleScaleMetadata.
class	N5CosemMultiScaleMetadata Janelia COSEM's implementation of a MultiscaleMetadata.
class	N5DefaultSingleScaleMetadata This class merely serves as a marker that all its values are default values.
class	N5MultiScaleMetadata An implementation of MultiscaleMetadata whose children are instances of N5SingleScaleMetadata.
class	N5SingleScaleMetadata Metadata representing an N5Dataset that implements SpatialMetadata and IntensityMetadata.
class	SpatialMultiscaleMetadata<T extends N5SpatialDatasetMetadata> An abstract class for a SpatialMetadataGroup whose children contain the same data sampled at different resolutions.

Methods in org.janelia.saalfeldlab.n5.universe.metadata with type parameters of type N5Metadata

Modifier and Type	Method and Description
static <M extends N5Metadata> M	MetadataUtils.permuteSpatialMetadata(M metadata, int[] axisPermutation)

Methods in org.janelia.saalfeldlab.n5.universe.metadata that return N5Metadata

Modifier and Type	Method and Description
T[]	N5MetadataGroup.getChildrenMetadata() Note: This is NOT gauranteeed to be sorted.
T[]	GenericMetadataGroup.getChildrenMetadata()

Methods in org.janelia.saalfeldlab.n5.universe.metadata with parameters of type N5Metadata

Modifier and Type	Method and Description
static void	MetadataUtils.updateChildrenMetadata(N5TreeNode parent, N5Metadata[] childrenMetadata, boolean relative)

Constructors in org.janelia.saalfeldlab.n5.universe.metadata with parameters of type N5Metadata

Constructor and Description
GenericMetadataGroup(String path, T[] children)

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata.axes

Classes in org.janelia.saalfeldlab.n5.universe.metadata.axes that implement N5Metadata

Modifier and Type	Class and Description
class	DefaultAxisMetadata Default implementation of AxisMetadata.
class	DefaultDatasetAxisMetadata Default implementation of AxisMetadata.
class	DefaultIndexedAxisMetadata Default implementation of IndexedAxisMetadata.

Methods in org.janelia.saalfeldlab.n5.universe.metadata.axes with type parameters of type N5Metadata

Modifier and Type	Method and Description
static <M extends AxisMetadata & N5Metadata> M	AxisUtils.permuteForImagePlus(int[] spatialPermutation, M meta)
static <T,M extends AxisMetadata & N5Metadata> net.imglib2.RandomAccessibleInterval<T>	AxisUtils.permuteForImagePlus(net.imglib2.RandomAccessibleInterval<T> img, M meta)
static <T,M extends N5Metadata,A extends AxisMetadata & N5Metadata> net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<T>,M>	AxisUtils.permuteImageAndMetadataForImagePlus(int[] p, net.imglib2.RandomAccessibleInterval<T> img, M meta)
static <T,M extends N5Metadata,A extends AxisMetadata & N5Metadata> net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<T>,M>	AxisUtils.permuteImageAndMetadataForImagePlus(int[] p, net.imglib2.RandomAccessibleInterval<T> img, M meta)
static <T,M extends N5Metadata,A extends AxisMetadata & N5Metadata> net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<T>,M>	AxisUtils.permuteImageAndMetadataForImagePlus(net.imglib2.RandomAccessibleInterval<T> img, M meta)
static <T,M extends N5Metadata,A extends AxisMetadata & N5Metadata> net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<T>,M>	AxisUtils.permuteImageAndMetadataForImagePlus(net.imglib2.RandomAccessibleInterval<T> img, M meta)

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata.canonical

Classes in org.janelia.saalfeldlab.n5.universe.metadata.canonical with type parameters of type N5Metadata

Modifier and Type	Class and Description
class	AbstractMetadataTemplateParser<T extends N5Metadata> Interface for metadata describing how spatial data are oriented in physical space.

Subinterfaces of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata.canonical

Modifier and Type	Interface and Description
interface	CanonicalMetadata

Classes in org.janelia.saalfeldlab.n5.universe.metadata.canonical that implement N5Metadata

Modifier and Type	Class and Description
class	CalibratedTransformMetadata
class	CanonicalDatasetMetadata
class	CanonicalMultichannelMetadata
class	CanonicalMultiscaleMetadata
class	CanonicalSpatialDatasetMetadata
class	CanonicalSpatialMetadata
class	MultiChannelMetadataCanonical
class	MultiResolutionSpatialMetadataCanonical
class	SpatialMetadataCanonical Interface for metadata describing how spatial data are oriented in physical space.

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff

Classes in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff that implement N5Metadata

Modifier and Type	Class and Description
class	NgffSingleScaleAxesMetadata
class	OmeNgffMetadata
class	OmeNgffMultiScaleMetadata
class	OmeNgffMultiScaleMetadataMutable

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff with type parameters of type N5Metadata

Modifier and Type	Method and Description
static <T,M extends AxisMetadata & N5Metadata> net.imglib2.RandomAccessibleInterval<T>	OmeNgffMetadata.permuteForNgff(net.imglib2.RandomAccessibleInterval<T> img, M meta)

Uses of N5Metadata in org.janelia.saalfeldlab.n5.universe.translation

Classes in org.janelia.saalfeldlab.n5.universe.translation with type parameters of type N5Metadata

Modifier and Type	Class and Description
class	TranslatedMetadataWriter<T extends N5Metadata>