org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff

Class OmeNgffMultiScaleMetadataMutable

java.lang.Object

org.janelia.saalfeldlab.n5.universe.metadata.MultiscaleMetadata<T>

org.janelia.saalfeldlab.n5.universe.metadata.SpatialMultiscaleMetadata<NgffSingleScaleAxesMetadata>

org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.OmeNgffMultiScaleMetadata

org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.OmeNgffMultiScaleMetadataMutable

All Implemented Interfaces:

N5Metadata, N5MetadataGroup<NgffSingleScaleAxesMetadata>, SpatialMetadata, SpatialMetadataGroup<NgffSingleScaleAxesMetadata>

public class OmeNgffMultiScaleMetadataMutable
extends OmeNgffMultiScaleMetadata

Nested Class Summary

Nested classes/interfaces inherited from class org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.OmeNgffMultiScaleMetadata

OmeNgffMultiScaleMetadata.OmeNgffDataset, OmeNgffMultiScaleMetadata.OmeNgffDownsamplingMetadata

Field Summary

Fields inherited from class org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.OmeNgffMultiScaleMetadata

axes, childrenAttributes, coordinateTransformations, metadata, name, type, version

Fields inherited from class org.janelia.saalfeldlab.n5.universe.metadata.MultiscaleMetadata

basePath, childrenMetadata

Constructor Summary

Constructors

Constructor and Description
OmeNgffMultiScaleMetadataMutable()
OmeNgffMultiScaleMetadataMutable(String path)

Method Summary

Modifier and Type	Method and Description
void	addChild(int idx, NgffSingleScaleAxesMetadata child)
void	addChild(NgffSingleScaleAxesMetadata child)
void	clear()
Axis[]	getAxes()
NgffSingleScaleAxesMetadata[]	getChildrenMetadata() Note: This is NOT gauranteeed to be sorted.
CoordinateTransformation<?>[]	getCoordinateTransformations()
OmeNgffMultiScaleMetadata.OmeNgffDataset[]	getDatasets()
String	getPath()
String[]	getPaths()
void	setPath(String path)

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.OmeNgffMultiScaleMetadata

allSameAxisOrder, buildChild, buildChildren, buildChildren, buildMetadata, buildMetadata, buildMetadata, cOrder, defaultAxes, fOrder, getCanonicalPaths, units

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.MultiscaleMetadata

sortScaleMetadata

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialMetadataGroup

spatialTransform, spatialTransform3d, spatialTransforms, spatialTransforms3d, unit

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5Metadata

getName

Constructor Detail

OmeNgffMultiScaleMetadataMutable

public OmeNgffMultiScaleMetadataMutable()

OmeNgffMultiScaleMetadataMutable

public OmeNgffMultiScaleMetadataMutable(String path)

Method Detail

getPath

public String getPath()

Specified by:

getPath in interface N5Metadata

Overrides:

getPath in class MultiscaleMetadata<NgffSingleScaleAxesMetadata>

Returns:

the path to this metadata, with respect to the base of the container

setPath

public void setPath(String path)

addChild

public void addChild(NgffSingleScaleAxesMetadata child)

addChild

public void addChild(int idx,
                     NgffSingleScaleAxesMetadata child)

clear

public void clear()

getChildrenMetadata

public NgffSingleScaleAxesMetadata[] getChildrenMetadata()

Description copied from interface: N5MetadataGroup

Note: This is NOT gauranteeed to be sorted. Sort with

Specified by:

getChildrenMetadata in interface N5MetadataGroup<NgffSingleScaleAxesMetadata>

Overrides:

getChildrenMetadata in class OmeNgffMultiScaleMetadata

Returns:

an array of the metadata for the children of this group

getPaths

public String[] getPaths()

Specified by:

getPaths in interface N5MetadataGroup<NgffSingleScaleAxesMetadata>

Overrides:

getPaths in class MultiscaleMetadata<NgffSingleScaleAxesMetadata>

Returns:

an array of the paths to each of the children in this group, with respect to the base of the container

getDatasets

public OmeNgffMultiScaleMetadata.OmeNgffDataset[] getDatasets()

Overrides:

getDatasets in class OmeNgffMultiScaleMetadata

getCoordinateTransformations

public CoordinateTransformation<?>[] getCoordinateTransformations()

Overrides:

getCoordinateTransformations in class OmeNgffMultiScaleMetadata

getAxes

public Axis[] getAxes()

Overrides:

getAxes in class OmeNgffMultiScaleMetadata