org.janelia.saalfeldlab.n5.universe.metadata

Class N5SingleScaleMetadata

java.lang.Object

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5Metadata

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5DatasetMetadata

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5SpatialDatasetMetadata

org.janelia.saalfeldlab.n5.universe.metadata.N5SingleScaleMetadata

All Implemented Interfaces:

IntensityMetadata, N5DatasetMetadata, N5Metadata, N5SpatialDatasetMetadata, SpatialMetadata, SpatialModifiable<N5SingleScaleMetadata>

Direct Known Subclasses:

N5CosemMetadata, N5DefaultSingleScaleMetadata

public class N5SingleScaleMetadata
extends AbstractN5SpatialDatasetMetadata
implements SpatialModifiable<N5SingleScaleMetadata>

Metadata representing an N5Dataset that implements SpatialMetadata and IntensityMetadata.

Author:

Caleb Hulbert, John Bogovic

Constructor Summary

Constructors

Constructor and Description
N5SingleScaleMetadata(String path, net.imglib2.realtransform.AffineTransform3D transform, double[] downsamplingFactors, double[] pixelResolution, double[] offset, String unit, org.janelia.saalfeldlab.n5.DatasetAttributes attributes)
N5SingleScaleMetadata(String path, net.imglib2.realtransform.AffineTransform3D transform, double[] downsamplingFactors, double[] pixelResolution, double[] offset, String unit, org.janelia.saalfeldlab.n5.DatasetAttributes attributes, boolean isLabelMultiset)
N5SingleScaleMetadata(String path, net.imglib2.realtransform.AffineTransform3D transform, double[] downsamplingFactors, double[] pixelResolution, double[] offset, String unit, org.janelia.saalfeldlab.n5.DatasetAttributes attributes, Double minIntensity, Double maxIntensity, boolean isLabelMultiset)

Method Summary

Modifier and Type	Method and Description
double[]	getDownsamplingFactors()
double[]	getOffset()
double[]	getPixelResolution()
boolean	isLabelMultiset()
double	maxIntensity()
double	minIntensity()
N5SingleScaleMetadata	modifySpatialTransform(String newPath, net.imglib2.realtransform.AffineGet relativeTransformation)
net.imglib2.realtransform.AffineGet	spatialTransform()
String	unit()

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5DatasetMetadata

getAttributes

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5Metadata

getPath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialModifiable

modifySpatialTransform

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialMetadata

spatialTransform3d

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.IntensityMetadata

maxForDataType

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5DatasetMetadata

getAttributes

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5Metadata

getName, getPath

Constructor Detail

N5SingleScaleMetadata

public N5SingleScaleMetadata(String path,
                             net.imglib2.realtransform.AffineTransform3D transform,
                             double[] downsamplingFactors,
                             double[] pixelResolution,
                             double[] offset,
                             String unit,
                             org.janelia.saalfeldlab.n5.DatasetAttributes attributes)

N5SingleScaleMetadata

public N5SingleScaleMetadata(String path,
                             net.imglib2.realtransform.AffineTransform3D transform,
                             double[] downsamplingFactors,
                             double[] pixelResolution,
                             double[] offset,
                             String unit,
                             org.janelia.saalfeldlab.n5.DatasetAttributes attributes,
                             boolean isLabelMultiset)

N5SingleScaleMetadata

public N5SingleScaleMetadata(String path,
                             net.imglib2.realtransform.AffineTransform3D transform,
                             double[] downsamplingFactors,
                             double[] pixelResolution,
                             double[] offset,
                             String unit,
                             org.janelia.saalfeldlab.n5.DatasetAttributes attributes,
                             Double minIntensity,
                             Double maxIntensity,
                             boolean isLabelMultiset)

Method Detail

spatialTransform

public net.imglib2.realtransform.AffineGet spatialTransform()

Specified by:

spatialTransform in interface SpatialMetadata

Returns:

a copy of the transformation from pixel to physical space.

unit

public String unit()

Specified by:

unit in interface SpatialMetadata

minIntensity

public double minIntensity()

Specified by:

minIntensity in interface IntensityMetadata

Returns:

the minimum intensity value of the data

maxIntensity

public double maxIntensity()

Specified by:

maxIntensity in interface IntensityMetadata

Returns:

the maximum intensity value of the data

getPixelResolution

public double[] getPixelResolution()

getOffset

public double[] getOffset()

getDownsamplingFactors

public double[] getDownsamplingFactors()

isLabelMultiset

public boolean isLabelMultiset()

modifySpatialTransform

public N5SingleScaleMetadata modifySpatialTransform(String newPath,
                                                    net.imglib2.realtransform.AffineGet relativeTransformation)

Specified by:

modifySpatialTransform in interface SpatialModifiable<N5SingleScaleMetadata>