org.janelia.saalfeldlab.n5.universe.metadata

Class N5CosemMetadata

java.lang.Object

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5Metadata

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5DatasetMetadata

org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5SpatialDatasetMetadata

org.janelia.saalfeldlab.n5.universe.metadata.N5SingleScaleMetadata

org.janelia.saalfeldlab.n5.universe.metadata.N5CosemMetadata

All Implemented Interfaces:

AxisMetadata, IntensityMetadata, N5DatasetMetadata, N5Metadata, N5SpatialDatasetMetadata, SpatialMetadata, SpatialModifiable<N5SingleScaleMetadata>

public class N5CosemMetadata
extends N5SingleScaleMetadata
implements AxisMetadata

Janelia COSEM's implementation of a N5SingleScaleMetadata.

Author:

John Bogovic

See Also:

https://www.janelia.org/project-team/cosem

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	N5CosemMetadata.CosemTransform

Field Summary

Fields

Modifier and Type	Field and Description
static String	F_ORDER

Constructor Summary

Constructors

Constructor and Description
N5CosemMetadata(String path, N5CosemMetadata.CosemTransform transform, org.janelia.saalfeldlab.n5.DatasetAttributes attributes)

Method Summary

Modifier and Type	Method and Description
Axis[]	getAxes()
String[]	getAxisLabels()
String[]	getAxisTypes()
N5CosemMetadata.CosemTransform	getCosemTransform()
String[]	getUnits()
N5CosemMetadata	modifySpatialTransform(String newPath, net.imglib2.realtransform.AffineGet relativeTransformation)
net.imglib2.realtransform.AffineGet	spatialTransform()

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.N5SingleScaleMetadata

getDownsamplingFactors, getOffset, getPixelResolution, isLabelMultiset, maxIntensity, minIntensity, unit

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5DatasetMetadata

getAttributes

Methods inherited from class org.janelia.saalfeldlab.n5.universe.metadata.AbstractN5Metadata

getPath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.axes.AxisMetadata

getAxis, indexesOfType, indexOf

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialModifiable

modifySpatialTransform

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialMetadata

spatialTransform3d

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.IntensityMetadata

maxForDataType

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5DatasetMetadata

getAttributes

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5Metadata

getName, getPath

Field Detail

F_ORDER

public static final String F_ORDER

See Also:

Constant Field Values

Constructor Detail

N5CosemMetadata

public N5CosemMetadata(String path,
                       N5CosemMetadata.CosemTransform transform,
                       org.janelia.saalfeldlab.n5.DatasetAttributes attributes)

Method Detail

getCosemTransform

public N5CosemMetadata.CosemTransform getCosemTransform()

getAxisLabels

public String[] getAxisLabels()

Specified by:

getAxisLabels in interface AxisMetadata

getAxisTypes

public String[] getAxisTypes()

Specified by:

getAxisTypes in interface AxisMetadata

getUnits

public String[] getUnits()

Specified by:

getUnits in interface AxisMetadata

getAxes

public Axis[] getAxes()

Specified by:

getAxes in interface AxisMetadata

spatialTransform

public net.imglib2.realtransform.AffineGet spatialTransform()

Specified by:

spatialTransform in interface SpatialMetadata

Overrides:

spatialTransform in class N5SingleScaleMetadata

Returns:

a copy of the transformation from pixel to physical space.

modifySpatialTransform

public N5CosemMetadata modifySpatialTransform(String newPath,
                                              net.imglib2.realtransform.AffineGet relativeTransformation)

Specified by:

modifySpatialTransform in interface SpatialModifiable<N5SingleScaleMetadata>

Overrides:

modifySpatialTransform in class N5SingleScaleMetadata