org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff

Class NgffSingleScaleAxesMetadata

java.lang.Object

org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.NgffSingleScaleAxesMetadata

All Implemented Interfaces:

AxisMetadata, IntensityMetadata, N5DatasetMetadata, N5Metadata, N5SpatialDatasetMetadata, SpatialMetadata, SpatialModifiable<NgffSingleScaleAxesMetadata>

public class NgffSingleScaleAxesMetadata
extends Object
implements AxisMetadata, N5SpatialDatasetMetadata, SpatialModifiable<NgffSingleScaleAxesMetadata>

Field Summary

Fields

Modifier and Type	Field and Description
static String	AXIS_KEY
static String	COORDINATETRANSFORMATIONS_KEY

Constructor Summary

Constructors

Constructor and Description
NgffSingleScaleAxesMetadata(String path, double[] scale, double[] translation, Axis[] axes, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes)
NgffSingleScaleAxesMetadata(String path, double[] scale, double[] translation, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes)

Method Summary

Modifier and Type	Method and Description
org.janelia.saalfeldlab.n5.DatasetAttributes	getAttributes() Return the dataset attributes if this metadata object represents a single dataset.
Axis[]	getAxes()
CoordinateTransformation<?>[]	getCoordinateTransformations()
String	getPath()
double[]	getScale()
double[]	getTranslation()
NgffSingleScaleAxesMetadata	modifySpatialTransform(String newPath, net.imglib2.realtransform.AffineGet relativeTransformation)
net.imglib2.realtransform.AffineGet	spatialTransform()
net.imglib2.realtransform.AffineTransform3D	spatialTransform3d()
String	unit()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.axes.AxisMetadata

getAxis, getAxisLabels, getAxisTypes, getUnits, indexesOfType, indexOf

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.IntensityMetadata

maxForDataType, maxIntensity, minIntensity

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.N5Metadata

getName

Methods inherited from interface org.janelia.saalfeldlab.n5.universe.metadata.SpatialModifiable

modifySpatialTransform

Field Detail

AXIS_KEY

public static final String AXIS_KEY

See Also:

Constant Field Values

COORDINATETRANSFORMATIONS_KEY

public static final String COORDINATETRANSFORMATIONS_KEY

See Also:

Constant Field Values

Constructor Detail

NgffSingleScaleAxesMetadata

public NgffSingleScaleAxesMetadata(String path,
                                   double[] scale,
                                   double[] translation,
                                   org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes)

NgffSingleScaleAxesMetadata

public NgffSingleScaleAxesMetadata(String path,
                                   double[] scale,
                                   double[] translation,
                                   Axis[] axes,
                                   org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes)

Method Detail

getAxes

public Axis[] getAxes()

Specified by:

getAxes in interface AxisMetadata

getCoordinateTransformations

public CoordinateTransformation<?>[] getCoordinateTransformations()

getAttributes

public org.janelia.saalfeldlab.n5.DatasetAttributes getAttributes()

Description copied from interface: N5DatasetMetadata

Return the dataset attributes if this metadata object represents a single dataset. Can return null if this metadata object represents multiscale set of datasets, for example.

Specified by:

getAttributes in interface N5DatasetMetadata

Returns:

the attributes

getPath

public String getPath()

Specified by:

getPath in interface N5Metadata

Returns:

the path to this metadata, with respect to the base of the container

getScale

public double[] getScale()

getTranslation

public double[] getTranslation()

spatialTransform

public net.imglib2.realtransform.AffineGet spatialTransform()

Specified by:

spatialTransform in interface SpatialMetadata

Returns:

a copy of the transformation from pixel to physical space.

unit

public String unit()

Specified by:

unit in interface SpatialMetadata

spatialTransform3d

public net.imglib2.realtransform.AffineTransform3D spatialTransform3d()

Specified by:

spatialTransform3d in interface SpatialMetadata

Returns:

a copy of the transformation from pixel to physical 3D space.

modifySpatialTransform

public NgffSingleScaleAxesMetadata modifySpatialTransform(String newPath,
                                                          net.imglib2.realtransform.AffineGet relativeTransformation)

Specified by:

modifySpatialTransform in interface SpatialModifiable<NgffSingleScaleAxesMetadata>