Uses of Class
org.janelia.saalfeldlab.n5.universe.metadata.axes.Axis

Packages that use Axis

Package	Description
org.janelia.saalfeldlab.n5.universe.metadata
org.janelia.saalfeldlab.n5.universe.metadata.axes
org.janelia.saalfeldlab.n5.universe.metadata.axisTransforms
org.janelia.saalfeldlab.n5.universe.metadata.canonical
org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff
org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.axes
org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.coordinateTransformations
org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.v05.graph

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata

Methods in org.janelia.saalfeldlab.n5.universe.metadata that return Axis

Modifier and Type	Method and Description
Axis[]	N5CosemMetadata.CosemTransform.buildAxes()
Axis[]	N5CosemMetadata.getAxes()

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.axes

Subclasses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.axes

Modifier and Type	Class and Description
class	IndexedAxis

Fields in org.janelia.saalfeldlab.n5.universe.metadata.axes declared as Axis

Modifier and Type	Field and Description
protected Axis[]	CoordinateSystem.axes

Methods in org.janelia.saalfeldlab.n5.universe.metadata.axes that return Axis

Modifier and Type	Method and Description
static Axis[]	AxisUtils.buildAxes(String... labels)
static Axis	Axis.defaultArray(int index)
static Axis[]	AxisUtils.defaultAxes(int N)
static Axis[]	AxisUtils.defaultAxes(String... labels)
static Axis	AxisUtils.defaultAxis(String label)
Axis[]	CoordinateSystem.getAxes()
Axis[]	IndexedAxisListMetadata.getAxes()
Axis[]	DefaultAxisMetadata.getAxes()
Axis[]	AxisMetadata.getAxes()
Axis	CoordinateSystem.getAxis(int i)
default Axis	AxisMetadata.getAxis(int i)
static Axis[]	Axis.space(String unit, String... names)
static Axis	AxisUtils.unknownAxis()

Methods in org.janelia.saalfeldlab.n5.universe.metadata.axes with parameters of type Axis

Modifier and Type	Method and Description
static int[]	AxisUtils.indexes(Axis[] axes, Predicate<Axis> predicate)

Method parameters in org.janelia.saalfeldlab.n5.universe.metadata.axes with type arguments of type Axis

Modifier and Type	Method and Description
static int[]	AxisUtils.indexes(Axis[] axes, Predicate<Axis> predicate)

Constructors in org.janelia.saalfeldlab.n5.universe.metadata.axes with parameters of type Axis

Constructor and Description
CoordinateSystem(String name, Axis[] axes)

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.axisTransforms

Methods in org.janelia.saalfeldlab.n5.universe.metadata.axisTransforms that return Axis

Modifier and Type	Method and Description
Axis[]	TransformAxes.getAxes()

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.canonical

Methods in org.janelia.saalfeldlab.n5.universe.metadata.canonical that return Axis

Modifier and Type	Method and Description
Axis[]	CanonicalSpatialMetadata.getAxes()
Axis[]	CanonicalSpatialDatasetMetadata.getAxes()
Axis[]	SpatialMetadataCanonical.getAxes()
Axis[]	CalibratedTransformMetadata.getAxes()

Constructors in org.janelia.saalfeldlab.n5.universe.metadata.canonical with parameters of type Axis

Constructor and Description
CalibratedTransformMetadata(String path, CalibratedSpatialTransform spatialTransform, Axis[] axes)
SpatialMetadataCanonical(String path, CalibratedSpatialTransform calTransform, Axis[] axes)
SpatialMetadataCanonical(String path, SpatialTransform transform, String unit, Axis[] axes)

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff

Fields in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff declared as Axis

Modifier and Type	Field and Description
Axis[]	OmeNgffMultiScaleMetadata.axes

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff that return Axis

Modifier and Type	Method and Description
static Axis[]	OmeNgffMultiScaleMetadata.defaultAxes()
protected Axis[]	MultiscalesAdapter.deserializeAxes(com.google.gson.JsonObject jobj, com.google.gson.JsonDeserializationContext context)
Axis[]	OmeNgffMultiScaleMetadataMutable.getAxes()
Axis[]	NgffSingleScaleAxesMetadata.getAxes()
Axis[]	OmeNgffMultiScaleMetadata.getAxes()

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff with parameters of type Axis

Modifier and Type	Method and Description
NgffSingleScaleAxesMetadata[]	OmeNgffMultiScaleMetadata.buildChildren(int nd, org.janelia.saalfeldlab.n5.DatasetAttributes[] datasetAttributes, CoordinateTransformation<?>[] coordinateTransformations, Axis[] axes)
static OmeNgffMetadata	OmeNgffMetadata.buildForWriting(int numDimensions, String name, String version, Axis[] axes, String[] scalePaths, double[][] scales, double[][] translations) Creates an OmeNgffMetadata object for writing.
static NgffSingleScaleAxesMetadata[]	OmeNgffMultiScaleMetadata.buildMetadata(int nd, String path, OmeNgffMultiScaleMetadata.OmeNgffDataset[] datasets, org.janelia.saalfeldlab.n5.DatasetAttributes[] childrenAttributes, CoordinateTransformation<?>[] transforms, OmeNgffMultiScaleMetadata.OmeNgffDownsamplingMetadata metadata, Axis[] axes)
static NgffSingleScaleAxesMetadata[]	OmeNgffMultiScaleMetadata.buildMetadata(int nd, String path, OmeNgffMultiScaleMetadata.OmeNgffDataset[] datasets, org.janelia.saalfeldlab.n5.DatasetAttributes[] childrenAttributes, CoordinateTransformation<?>[] transforms, OmeNgffMultiScaleMetadata.OmeNgffDownsamplingMetadata metadata, Axis[] axes, boolean reverseParameters)

Constructors in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff with parameters of type Axis

Constructor and Description
NgffSingleScaleAxesMetadata(String path, double[] scale, double[] translation, Axis[] axes, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes)
OmeNgffMultiScaleMetadata(int nd, String path, String name, String type, String version, Axis[] axes, OmeNgffMultiScaleMetadata.OmeNgffDataset[] datasets, CoordinateTransformation<?>[] coordinateTransformations, org.janelia.saalfeldlab.n5.DatasetAttributes[] childrenAttributes, OmeNgffMultiScaleMetadata.OmeNgffDownsamplingMetadata metadata)
OmeNgffMultiScaleMetadata(int nd, String path, String name, String type, String version, Axis[] axes, OmeNgffMultiScaleMetadata.OmeNgffDataset[] datasets, CoordinateTransformation<?>[] coordinateTransformations, org.janelia.saalfeldlab.n5.DatasetAttributes[] childrenAttributes, OmeNgffMultiScaleMetadata.OmeNgffDownsamplingMetadata metadata, NgffSingleScaleAxesMetadata[] childrenMetadata)

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.axes

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.axes that return Axis

Modifier and Type	Method and Description
static Axis[]	ArrayCoordinateSystem.arrayAxes(int nd)
Axis	AxisAdapter.deserialize(com.google.gson.JsonElement json, Type typeOfT, com.google.gson.JsonDeserializationContext context)

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.axes with parameters of type Axis

Modifier and Type	Method and Description
com.google.gson.JsonElement	AxisAdapter.serialize(Axis src, Type typeOfSrc, com.google.gson.JsonSerializationContext context)

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.coordinateTransformations

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.coordinateTransformations with parameters of type Axis

Modifier and Type	Method and Description
static net.imglib2.realtransform.AffineTransform3D	TransformUtils.spatialTransform3D(net.imglib2.realtransform.AffineGet affine, Axis[] axes)

Uses of Axis in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.v05.graph

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.v05.graph that return Axis

Modifier and Type	Method and Description
Axis[]	CoordinateSystems.axesFromLabels(String... axisLabels)
Axis	CoordinateSystems.getAxis(String name)
static Axis	CoordinateSystems.makeDefaultAxis(String name)

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.v05.graph that return types with arguments of type Axis

Modifier and Type	Method and Description
Stream<Axis>	CoordinateSystems.axes()

Methods in org.janelia.saalfeldlab.n5.universe.metadata.ome.ngff.v05.graph with parameters of type Axis

Modifier and Type	Method and Description
boolean	CoordinateSystems.add(Axis a)