Constant Field Values

Contents

• net.preibisch.*

net.preibisch.*

net.preibisch.mvrecon.fiji.datasetmanager.FileListDatasetDefinition

Modifier and Type	Constant Field	Value
public static final String	Z_VARIABLE_CHOICE	"Z-Planes (experimental)"

net.preibisch.mvrecon.fiji.datasetmanager.SimViewMetaData

Modifier and Type	Constant Field	Value
public static final char	ANGLE_PATTERN	'a'
public static final char	CAM_PATTERN	'm'
public static final char	CHANNEL_PATTERN	'c'
public static final char	PLANE_PATTERN	'p'
public static final char	TIMEPOINT_PATTERN	't'

net.preibisch.mvrecon.fiji.datasetmanager.StackList

Modifier and Type	Constant Field	Value
public static final char	ANGLE_PATTERN	'a'
public static final char	CHANNEL_PATTERN	'c'
public static final char	ILLUMINATION_PATTERN	'i'
public static final char	TILE_PATTERN	'x'
public static final char	TIMEPOINT_PATTERN	't'

net.preibisch.mvrecon.fiji.plugin.interestpointdetection.interactive.InteractiveDoG

Modifier and Type	Constant Field	Value
public static final float	inlierRatioMax	1.0f
public static final float	inlierRatioMin	0.0f
public static final float	maxErrorMax	10.0f
public static final float	maxErrorMin	9.999999747378752E-5f
public final int	sensitivity	4
public static final float	sigmaMax	10.0f
public static final float	sigmaMin	0.5f
public static final int	supportRadiusMax	25
public static final int	supportRadiusMin	1
public static final float	thresholdMax	0.30000001192092896f
public static final float	thresholdMin	9.999999747378752E-6f

net.preibisch.mvrecon.fiji.plugin.util.GUIHelper

Modifier and Type	Constant Field	Value
public static final String	messagePaper	"Please note that BigStitcher is based on a publication.\nIf you use it successfully for your research please be so kind to cite our work:\nNature Methods 16: 870\u2013874 (2019)\n"
public static final String	messageWebsite	"This plugin was written by the Preibisch Lab is now supported by the HHMI Janelia Open Science Software initative\n"
public static final String	myURL	"https://www.janelia.org/open-science/overview/open-science-software-initiative-ossi"
public static final String	paperURL	"https://www.nature.com/articles/s41592-019-0501-0"

net.preibisch.mvrecon.fiji.spimdata.boundingbox.XmlKeysBoundingBox

Modifier and Type	Constant Field	Value
public static final String	BOUNDINGBOX_TAG	"BoundingBoxDefinition"
public static final String	BOUNDINGBOX_TAG_MAX	"max"
public static final String	BOUNDINGBOX_TAG_MIN	"min"
public static final String	BOUNDINGBOX_TAG_NAME	"name"
public static final String	BOUNDINGBOXES_TAG	"BoundingBoxes"

net.preibisch.mvrecon.fiji.spimdata.explorer.ViewSetupExplorer<AS>

Modifier and Type	Constant Field	Value
public static final double	xPos	0.4
public static final double	xPosLog	0.0
public static final double	yPos	0.4
public static final double	yPosLog	0.8

net.preibisch.mvrecon.fiji.spimdata.explorer.popup.RemoveTransformationPopup

Modifier and Type	Constant Field	Value
public static final int	askWhenMoreThan	5

net.preibisch.mvrecon.fiji.spimdata.explorer.popup.ResavePopup

Modifier and Type	Constant Field	Value
public static final int	askWhenMoreThan	5

net.preibisch.mvrecon.fiji.spimdata.imgloaders.MultipageTiffReader

Modifier and Type	Constant Field	Value
public static final char	BITS_PER_SAMPLE	'\u0102'
public static final int	COMMENTS_HEADER	84720485
public static final int	COMMENTS_OFFSET_HEADER	99384722
public static final int	DISPLAY_SETTINGS_HEADER	347834724
public static final int	DISPLAY_SETTINGS_OFFSET_HEADER	483765892
public static final char	IMAGE_DESCRIPTION	'\u010e'
public static final int	INDEX_MAP_HEADER	3453623
public static final int	INDEX_MAP_OFFSET_HEADER	54773648
public static final char	MM_METADATA	'\uc7b3'
public static final char	SAMPLES_PER_PIXEL	'\u0115'
public static final char	STRIP_BYTE_COUNTS	'\u0117'
public static final char	STRIP_OFFSETS	'\u0111'
public static final int	SUMMARY_MD_HEADER	2355492

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoAllenOMEZarrLoader

Modifier and Type	Constant Field	Value
public static final String	ZARR_V2_TAG	"ZarrV2"
public static final String	ZARR_V3_TAG	"ZarrV3"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoDHMImgLoader

Modifier and Type	Constant Field	Value
public static final String	AMPLITUDE_DIR_TAG	"amplitudeDir"
public static final String	AMPLITUDE_ID_TAG	"amplitudeId"
public static final String	EXTENSION_TAG	"ext"
public static final String	PHASE_DIR_TAG	"phaseDir"
public static final String	PHASE_ID_TAG	"phaseId"
public static final String	STACK_DIR_TAG	"stackDir"
public static final String	TIMEPOINTS_TAG	"timepoints"
public static final String	ZPLANES_TAG	"zplanes"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoFileListImgLoaderLOCI

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	FILE_MAPPING_TAG	"FileMapping"
public static final String	FILES_TAG	"files"
public static final String	MAPPING_C_TAG	"channel"
public static final String	MAPPING_FILE_TAG	"file"
public static final String	MAPPING_SERIES_TAG	"series"
public static final String	MAPPING_TP_TAG	"timepoint"
public static final String	MAPPING_VS_TAG	"view_setup"
public static final String	ZGROUPED_TAG	"ZGrouped"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoLightSheetZ1ImgLoader

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	IMGLIB2CONTAINER_PATTERN_TAG	"imglib2container"
public static final String	MASTER_FILE_TAG	"masterfile"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoMicroManagerImgLoader

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	IMGLIB2CONTAINER_PATTERN_TAG	"imglib2container"
public static final String	MASTER_FILE_TAG	"masterfile"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoSimViewImgLoader

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	FILEPATTERN_TAG	"filepattern"
public static final String	LITTLEENDIAN_TAG	"littleendian"
public static final String	PIXELTYPE_TAG	"pixeltype"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoSmartSPIMImgLoader

Modifier and Type	Constant Field	Value
public static final String	CHANNELS_TAG	"channels"
public static final String	FILTERS_TAG	"filters"
public static final String	METADATAFILE_TAG	"metadatafile"
public static final String	X_TILES_TAG	"xTileLocations"
public static final String	Y_TILES_TAG	"yTileLocations"
public static final String	Z_LAYERS	"zLayers"
public static final String	Z_OFFSETS_TAG	"zOffsets"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.XmlIoStackImgLoader<T>

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	FILE_PATTERN_TAG	"filePattern"
public static final String	LAYOUT_ANGLE_TAG	"layoutAngles"
public static final String	LAYOUT_CHANNEL_TAG	"layoutChannels"
public static final String	LAYOUT_ILLUMINATION_TAG	"layoutIlluminations"
public static final String	LAYOUT_TILE_TAG	"layoutTiles"
public static final String	LAYOUT_TP_TAG	"layoutTimepoints"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.filemap2.XmlIOFileMapImgLoaderLOCI2

Modifier and Type	Constant Field	Value
public static final String	DIRECTORY_TAG	"imagedirectory"
public static final String	FILE_MAPPING_TAG	"FileMapping"
public static final String	FILES_TAG	"files"
public static final String	MAPPING_C_TAG	"channel"
public static final String	MAPPING_FILE_TAG	"file"
public static final String	MAPPING_SERIES_TAG	"series"
public static final String	MAPPING_TP_TAG	"timepoint"
public static final String	MAPPING_VS_TAG	"view_setup"
public static final String	ZGROUPED_TAG	"ZGrouped"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.XmlIoFlatfieldCorrectedWrappedImgLoader

Modifier and Type	Constant Field	Value
public static final String	ACTIVE_TAG	"Active"
public static final String	BRIGHTIMG_TAG	"BrightImg"
public static final String	CACHED_TAG	"Cached"
public static final String	DARKIMG_TAG	"DarkImg"
public static final String	FLATFIELD_TAG	"FlatField"
public static final String	FLATFIELDS_TAG	"FlatFields"
public static final String	WRAPPED_IMGLOADER_TAG	"WrappedImgLoader"

net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting.XmlIoSplitViewerImgLoader

Modifier and Type	Constant Field	Value
public static final String	INTERVAL_TAG_MAX	"max"
public static final String	INTERVAL_TAG_MIN	"min"
public static final String	OLDSETUP_NAME	"OldViewSetup"
public static final String	SETUPIDS_NAME	"SetupIds"
public static final String	SETUPIDS_NEW	"NewId"
public static final String	SETUPIDS_OLD	"OldId"
public static final String	SETUPIDS_TAG	"SetupIdDefinition"

net.preibisch.mvrecon.fiji.spimdata.intensityadjust.XmlKeysIntensityAdjustments

Modifier and Type	Constant Field	Value
public static final String	INTENSITYADJ_SETUP_ATTRIBUTE_NAME	"setup"
public static final String	INTENSITYADJ_TAG	"IntensityAdjustments"
public static final String	INTENSITYADJ_TIMEPOINT_ATTRIBUTE_NAME	"timepoint"
public static final String	INTENSITYADJ_VALUE_TAG	"model"

net.preibisch.mvrecon.fiji.spimdata.interestpoints.InterestPointsN5

Modifier and Type	Constant Field	Value
public static final String	baseN5	"interestpoints.n5"

net.preibisch.mvrecon.fiji.spimdata.interestpoints.XmlKeysInterestPoints

Modifier and Type	Constant Field	Value
public static final String	VIEWINTERESTPOINTS_LABEL_ATTRIBUTE_NAME	"label"
public static final String	VIEWINTERESTPOINTS_PARAMETERS_ATTRIBUTE_NAME	"params"
public static final String	VIEWINTERESTPOINTS_SETUP_ATTRIBUTE_NAME	"setup"
public static final String	VIEWINTERESTPOINTS_TAG	"ViewInterestPoints"
public static final String	VIEWINTERESTPOINTS_TIMEPOINT_ATTRIBUTE_NAME	"timepoint"
public static final String	VIEWINTERESTPOINTSFILE_TAG	"ViewInterestPointsFile"

net.preibisch.mvrecon.fiji.spimdata.pointspreadfunctions.XmlKeysPointSpreadFunctions

Modifier and Type	Constant Field	Value
public static final String	PSF_FILE_TAG	"File"
public static final String	PSF_SETUP_ATTRIBUTE_NAME	"setup"
public static final String	PSF_TAG	"BoundingBoxDefinition"
public static final String	PSF_TIMEPOINT_ATTRIBUTE_NAME	"timepoint"
public static final String	PSFS_TAG	"PointSpreadFunctions"

net.preibisch.mvrecon.fiji.spimdata.stitchingresults.XmlKeysStitchingResults

Modifier and Type	Constant Field	Value
public static final String	STICHING_BBOX_TAG	"overlap_boundingbox"
public static final String	STICHING_CORRELATION_TAG	"correlation"
public static final String	STICHING_SHIFT_TAG	"shift"
public static final String	STITCHING_HASH_TAG	"hash"
public static final String	STITCHING_TP_A_TAG	"tp_a"
public static final String	STITCHING_TP_B_TAG	"tp_b"
public static final String	STITCHING_VS_A_TAG	"view_setup_a"
public static final String	STITCHING_VS_B_TAG	"view_setup_b"
public static final String	STITCHINGRESULT_PW_TAG	"PairwiseResult"
public static final String	STITCHINGRESULTS_TAG	"StitchingResults"

net.preibisch.mvrecon.headless.definedataset.MultipageTiffReader

Modifier and Type	Constant Field	Value
public static final char	BITS_PER_SAMPLE	'\u0102'
public static final int	COMMENTS_HEADER	84720485
public static final int	COMMENTS_OFFSET_HEADER	99384722
public static final int	DISPLAY_SETTINGS_HEADER	347834724
public static final int	DISPLAY_SETTINGS_OFFSET_HEADER	483765892
public static final char	IMAGE_DESCRIPTION	'\u010e'
public static final int	INDEX_MAP_HEADER	3453623
public static final int	INDEX_MAP_OFFSET_HEADER	54773648
public static final char	MM_METADATA	'\uc7b3'
public static final char	SAMPLES_PER_PIXEL	'\u0115'
public static final char	STRIP_BYTE_COUNTS	'\u0117'
public static final char	STRIP_OFFSETS	'\u0111'
public static final int	SUMMARY_MD_HEADER	2355492

net.preibisch.mvrecon.process.deconvolution.MultiViewDeconvolution<C>

Modifier and Type	Constant Field	Value
public static final float	minValue	9.999999747378752E-5f
public static final float	minValueImg	1.0f
public static final float	outsideValueImg	0.0f

net.preibisch.mvrecon.process.fusion.blk.DisplacementFieldN5Tools

Modifier and Type	Constant Field	Value
public static final String	CACHE_GROUP	"_displacement_field_cache"

net.preibisch.mvrecon.process.fusion.blk.SplitImgLoaderThinPlateSplineFusion.LandmarkRecord

Modifier and Type	Constant Field	Value
public static final String	TYPE_CORR_COM	"corrCOM"
public static final String	TYPE_MIDPOINT	"midpoint"
public static final String	TYPE_NAIL	"nail"

net.preibisch.mvrecon.process.interestpointdetection.InterestPointTools

Modifier and Type	Constant Field	Value
public static final String	warningLabel	" (WARNING: Only available for "

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.FixedModel

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	1

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantAffineModel3D

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	4

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantFixedModel

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	1

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantRigidModel2D

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	2

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantRigidModel3D

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	3

net.preibisch.mvrecon.process.pointcloud.pointdescriptor.model.TranslationInvariantSimilarityModel3D

Modifier and Type	Constant Field	Value
protected static final int	MIN_NUM_MATCHES	3

net.preibisch.mvrecon.process.splitting.ConsensusSetCriterion

Modifier and Type	Constant Field	Value
public static final String	CRITERION_NAME	"Multi-consensus sets"

net.preibisch.mvrecon.process.splitting.CrossViewCorrespondenceCriterion

Modifier and Type	Constant Field	Value
public static final String	CRITERION_NAME	"Cross-view correspondences"

net.preibisch.mvrecon.process.splitting.SplittingTools

Modifier and Type	Constant Field	Value
public static final String	IMAGE_SPLITTING_NAME	"Image Splitting"

net.preibisch.mvrecon.vecmath.Transform3D

Modifier and Type	Constant Field	Value
public static final int	AFFINE	128
public static final int	CONGRUENT	64
public static final int	IDENTITY	2
public static final int	NEGATIVE_DETERMINANT	256
public static final int	ORTHOGONAL	16
public static final int	RIGID	32
public static final int	SCALE	4
public static final int	TRANSLATION	8
public static final int	ZERO	1