Package net.preibisch.mvrecon.fiji.datasetmanager

Class FileListDatasetDefinition

java.lang.Object

net.preibisch.mvrecon.fiji.datasetmanager.FileListDatasetDefinition

All Implemented Interfaces:

MultiViewDatasetDefinition

public class FileListDatasetDefinition
extends Object
implements MultiViewDatasetDefinition

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
protected static interface	FileListDatasetDefinition.FileListChooser
protected static class	FileListDatasetDefinition.SimpleDirectoryFileListChooser
protected static class	FileListDatasetDefinition.WildcardFileListChooser

Field Summary

Fields

Modifier and Type	Field	Description
static int	defaultLoadChoice
static boolean	defaultVirtual
static final String[]	GLOB_SPECIAL_CHARS
static final String[]	loadChoices
static boolean	windowsHack
static final String	Z_VARIABLE_CHOICE

Constructor Summary

Constructors

Constructor	Description
FileListDatasetDefinition()

Method Summary

Modifier and Type	Method	Description
static void	addMessageAsJLabel(String msg, ij.gui.GenericDialog gd)
static void	addMessageAsJLabel(String msg, ij.gui.GenericDialog gd, Font font)
static void	addMessageAsJLabel(String msg, ij.gui.GenericDialog gd, Font font, Color color)
static boolean	containsAny(String s, String... templates)
SpimData2	createDataset(String xmlFileName)	This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
static String	getColoredHtmlFromPattern(String pattern, boolean withRootTag)
static Color	getColorN(long n)
String	getExtendedDescription()	An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored.
static List<File>	getFilesFromPattern(String pattern, long fileMinSize)
static File	getLongestPathPrefix(Collection<String> paths)
static String	getRangeRepresentation(net.imglib2.util.Pair<Integer,Integer> range)
String	getTitle()	Defines the title under which it will be displayed in the list of available multi-view dataset definitions
static void	main(String[] args)
MultiViewDatasetDefinition	newInstance()
static net.imglib2.util.Pair<String,String>	splitIntoPathAndPattern(String s, String... templates)
static net.imglib2.util.Pair<String,String>	splitIntoPrefixAndPattern(FilenamePatternDetector detector)
boolean	supportsRemoteXMLLocation()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

GLOB_SPECIAL_CHARS

public static final String[] GLOB_SPECIAL_CHARS

loadChoices

public static final String[] loadChoices

Z_VARIABLE_CHOICE

public static final String Z_VARIABLE_CHOICE

See Also:

• Constant Field Values

windowsHack

public static boolean windowsHack

defaultLoadChoice

public static int defaultLoadChoice

defaultVirtual

public static boolean defaultVirtual

Constructor Details

FileListDatasetDefinition

public FileListDatasetDefinition()

Method Details

supportsRemoteXMLLocation

public boolean supportsRemoteXMLLocation()

Specified by:

supportsRemoteXMLLocation in interface MultiViewDatasetDefinition

Returns:

if the XML can be stored somewhere else but where the data is located

addMessageAsJLabel

public static void addMessageAsJLabel(String msg,
 ij.gui.GenericDialog gd)

addMessageAsJLabel

public static void addMessageAsJLabel(String msg,
 ij.gui.GenericDialog gd,
 Font font)

addMessageAsJLabel

public static void addMessageAsJLabel(String msg,
 ij.gui.GenericDialog gd,
 Font font,
 Color color)

getFilesFromPattern

public static List<File> getFilesFromPattern(String pattern,
 long fileMinSize)

createDataset

public SpimData2 createDataset(String xmlFileName)

Description copied from interface: MultiViewDatasetDefinition

This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.

Specified by:

createDataset in interface MultiViewDatasetDefinition

Parameters:

xmlFileName - - the filename of the XML that was selected (no path!)

Returns:

- the saved SpimData2 object

getLongestPathPrefix

public static File getLongestPathPrefix(Collection<String> paths)

getTitle

public String getTitle()

Description copied from interface: MultiViewDatasetDefinition

Defines the title under which it will be displayed in the list of available multi-view dataset definitions

Specified by:

getTitle in interface MultiViewDatasetDefinition

Returns:

the title

getExtendedDescription

public String getExtendedDescription()

Description copied from interface: MultiViewDatasetDefinition

An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored. Up to 15 lines will be displayed with 80 characters each. No newline characters are allowed.

Specified by:

getExtendedDescription in interface MultiViewDatasetDefinition

Returns:

description

newInstance

public MultiViewDatasetDefinition newInstance()

Specified by:

newInstance in interface MultiViewDatasetDefinition

Returns:

- a new instance of this implementation

containsAny

public static boolean containsAny(String s,
 String... templates)

getColoredHtmlFromPattern

public static String getColoredHtmlFromPattern(String pattern,
 boolean withRootTag)

getColorN

public static Color getColorN(long n)

splitIntoPrefixAndPattern

public static net.imglib2.util.Pair<String,String> splitIntoPrefixAndPattern(FilenamePatternDetector detector)

getRangeRepresentation

public static String getRangeRepresentation(net.imglib2.util.Pair<Integer,Integer> range)

splitIntoPathAndPattern

public static net.imglib2.util.Pair<String,String> splitIntoPathAndPattern(String s,
 String... templates)

main

public static void main(String[] args)