| Modifier and Type | Class and Description |
|---|---|
class |
CreateImgFromII<T extends NativeType<T>>
|
class |
CreateImgFromImg<T extends Type<T>>
|
class |
CreateImgFromInterval
|
class |
CreateImgFromRAI<T extends NativeType<T>>
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateImgFactoryFromImg<T>
Gets an
ImgFactory for the given Img. |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateImgLabelingFromInterval<L,T extends IntegerType<T>>
Creates an
ImgLabeling from an Interval. |
class |
DefaultCreateImgLabeling<L,T extends IntegerType<T>>
Default implementation of the "create.imgLabeling" op.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultCreateImgPlus<T>
Default implementation of the "create.imgPlus" op.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateKernel2D<T extends ComplexType<T>>
This Op takes a 2-D array of explicit values and creates a simple image, e.g.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultCreateKernelGibsonLanni<T extends ComplexType<T> & NativeType<T>>
Creates a Gibson Lanni Kernel.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateKernelGaussDoubleType
Creates a Gaussian kernel of type
DoubleType. |
class |
CreateKernelGaussSymmetric<T extends ComplexType<T>>
Creates a symmetric Gaussian kernel.
|
class |
CreateKernelGaussSymmetricDoubleType
Creates a symmetric Gaussian kernel of type
DoubleType. |
class |
DefaultCreateKernelGauss<T extends ComplexType<T>>
Creates a Gaussian Kernel
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateKernelLogDoubleType
Creates a log kernel of type
DoubleType. |
class |
CreateKernelLogSymmetric<T extends ComplexType<T>>
Creates a Gaussian Kernel
|
class |
CreateKernelLogSymmetricDoubleType
Creates a symmetric log kernel of type
DoubleType. |
class |
DefaultCreateKernelLog<T extends ComplexType<T>>
Laplacian of Gaussian filter ported from
fiji.plugin.trackmate.detection.DetectionUtil.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateNativeTypeFromClass<T extends NativeType<T>>
Creates the
NativeType given by the input Class. |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateObjectFromClass<T>
Instantiates an object given by the input
Class. |
| Modifier and Type | Class and Description |
|---|---|
class |
NonCirculantFirstGuess<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>>
Calculate non-circulant first guess.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultEval
Evaluates an expression.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CoocHXY
NB: Helper class.
|
class |
CoocMeanX
NB: Helper class.
|
class |
CoocMeanY
NB: Helper class.
|
class |
CoocPX
NB: Helper class.
|
class |
CoocPXMinusY
NB: Helper class.
|
class |
CoocPXPlusY
NB: Helper class.
|
class |
CoocPY
NB: Helper class.
|
class |
CoocStdX
NB: Helper class.
|
class |
CoocStdY
NB: Helper class.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ZernikeComputer<T extends RealType<T>>
Computes a specific zernike moment
|
| Modifier and Type | Class and Description |
|---|---|
class |
PartialDerivativesRAI<T extends RealType<T>>
Convenience op for partial derivatives.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FFTMethodsOpF<T extends RealType<T>,C extends ComplexType<C>>
Function that uses FFTMethods to perform a forward FFT
|
| Modifier and Type | Class and Description |
|---|---|
class |
ComputeFFTMethodsSize
Op that calculates FFT sizes.
|
class |
DefaultComputeFFTSize
Op that calculates FFT fast sizes according to the following logic.
|
| Modifier and Type | Class and Description |
|---|---|
class |
HessianRAI<T extends RealType<T>>
Hessian filter using the sobel filter with separated kernel.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PadInput<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>>
Op used to pad the image by extending the borders
|
| Modifier and Type | Class and Description |
|---|---|
class |
CentroidII
This
Op computes the centroid of a IterableRegion (Label). |
class |
CentroidLabelRegion
This
Op computes the centroid of a IterableRegion (Label). |
class |
CentroidMesh
Generic implementation of
geom.centroid. |
class |
CentroidPolygon
Generic implementation of
geom.centroid. |
class |
DefaultCenterOfGravity<T extends RealType<T>>
This
Op computes the center of gravity of a IterableRegion
(Label). |
class |
SizeII
Generic implementation of
Ops.Geometric.Size. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultBoundingBox
Generic implementation of
geom.boundingBox. |
class |
DefaultContour<B extends BooleanType<B>>
Generic implementation of
geom.contour. |
class |
DefaultConvexHull2D
Generic implementation of
geom.convexHull. |
class |
DefaultMaximumFeret
Maximum Feret of a polygon.
|
class |
DefaultMinimumFeret
Minimum Feret of a polygon.
|
class |
DefaultMinorMajorAxis
Generic implementation of
geom.secondMultiVariate. |
class |
DefaultSmallestEnclosingRectangle
Generic implementation of
geom.smallestBoundingBox. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultConvexHull3D
This quickhull implementation is based on the paper
"The Quickhull Algorithm for Convex Hulls" by Barber, Dobkin and Huhdanpaa
(http://dpd.cs.princeton.edu/Papers/BarberDobkinHuhdanpaa.pdf).
|
class |
DefaultInertiaTensor3D<B extends BooleanType<B>>
This
Op computes the 2nd multi variate of a IterableRegion
(Label). |
class |
DefaultInertiaTensor3DMesh
This
Op computes the 2nd multi variate of a IterableRegion
(Label). |
class |
DefaultMarchingCubes<T extends BooleanType<T>>
This is a marching cubes implementation.
|
class |
DefaultVolumeMesh
Generic implementation of
Ops.Geometric.Size. |
class |
DefaultVoxelization3D
This is a voxelizer that produces a binary image with values filled in along
the surface of the mesh.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultSmallestOrientedBoundingBox
Generic implementation of
geom.smallestBoundingBox. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultASCII<T extends RealType<T>>
Generates an ASCII version of an image.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CooccurrenceMatrix2D<T extends RealType<T>>
Calculates coocccurrence matrix from an 2D-
IterableInterval. |
class |
CooccurrenceMatrix3D<T extends RealType<T>>
Calculates coocccurrence matrix from an 3D-
IterableInterval. |
| Modifier and Type | Class and Description |
|---|---|
class |
HistogramCreate<T extends RealType<T>> |
| Modifier and Type | Class and Description |
|---|---|
class |
WrappedIntegralImg<I extends RealType<I>>
Wrapper op for the creation of integral images with
net.imglib2.algorithm.integral.IntegralImg. |
| Modifier and Type | Class and Description |
|---|---|
class |
NormalizeIIFunction<T extends RealType<T>>
Normalizes an
IterableInterval given its minimum and maximum to
another range defined by minimum and maximum. |
| Modifier and Type | Class and Description |
|---|---|
class |
LookupByName
Implementation of "op" that finds the op by name.
|
class |
LookupByType
Implementation of "op" that finds the op by type.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractMapView<EI,EO,PI,PO>
Abstract base class for
MapView implementations. |
class |
MapViewIIToII<EI,EO extends Type<EO>>
MapView which converts an IterableInterval between element
types. |
class |
MapViewRAIToRAI<EI,EO extends Type<EO>>
MapView which converts an RandomAccessibleInterval between
element types. |
class |
MapViewRandomAccessToRandomAccess<EI,EO extends Type<EO>>
MapView which converts a RandomAccessible between element
types. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtractHolesFunction<T extends BooleanType<T>> |
| Modifier and Type | Class and Description |
|---|---|
class |
RunByName
Implementation of "run" that invokes the op by name.
|
class |
RunByOp
Implementation of "run" that invokes the specified
Op instance. |
class |
RunByType
Implementation of "run" that invokes the op by type.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultDetectJunctions
Finds the junctions between a
ArrayList of WritablePolyline,
intended to be used optionally after running DefaultDetectRidges but
applicable to all groups of polylines. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultDetectRidges<T extends RealType<T>>
Performs the Ridge Detection algorithm on a 2-Dimensional, gray-scale image.
|
| Modifier and Type | Class and Description |
|---|---|
class |
UFViaUC<I extends DI,O extends DO,DI,DO>
Base class for
UnaryFunctionOps that delegate to
UnaryComputerOps. |
class |
UFViaUCAllSame<IO>
Base class for
UnaryFunctionOps that delegate to
UnaryComputerOps with all matching types (input same as output). |
class |
UFViaUCSameIO<I,O>
Base class for
UnaryFunctionOps that delegate to
UnaryComputerOps with the same input and output types. |
class |
UFViaUF<I extends DI,O,DI,DO extends O>
Base class for
UnaryFunctionOps that delegate to other
UnaryFunctionOps. |
class |
UFViaUFAllSame<IO>
Base class for
UnaryFunctionOps that delegate to other
UnaryFunctionOps with all matching types (input same as output). |
class |
UFViaUFSameIO<I,O>
Base class for
UnaryFunctionOps that delegate to other
UnaryFunctionOps with the same input and output types. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultMinMax<I extends RealType<I>>
Op to calculate the stats.minMax. |
| Modifier and Type | Class and Description |
|---|---|
class |
Quadric
An op that fits a quadratic surface (quadric) into a set of points.
|
| Modifier and Type | Class and Description |
|---|---|
class |
BoxCount<B extends BooleanType<B>>
An N-dimensional version of fixed-grid box counting algorithm that can be
used to estimate the fractal dimension of an interval
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddDimensionViewMinMax<T>
Wraps the
Views.addDimension(RandomAccessibleInterval, long, long)
method. |
class |
DefaultAddDimensionView<T>
Wraps the
Views.addDimension(RandomAccessible) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultCollapseNumeric2CompositeIntervalView<T extends NumericType<T>>
Wraps the
Views.collapseNumeric(RandomAccessibleInterval) method. |
class |
DefaultCollapseNumeric2CompositeView<T extends NumericType<T>>
Wraps the
Views.collapseNumeric(RandomAccessible, int) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultCollapseReal2CompositeIntervalView<T extends RealType<T>>
Wraps the
Views.collapseReal(RandomAccessibleInterval) method. |
class |
DefaultCollapseReal2CompositeView<T extends RealType<T>>
Wraps the
Views.collapseReal(RandomAccessible, int) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultCollapse2CompositeIntervalView<T>
Wraps the
Views.collapse(RandomAccessibleInterval) method. |
class |
DefaultCollapse2CompositeView<T>
Wraps the
Views.collapse(RandomAccessible) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
ConcatenateViewWithAccessMode<T>
Wraps the
Views#concatenate(int, StackAccessMode, List) method. |
class |
DefaultConcatenateView<T>
Wraps the
Views.concatenate(int, List) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultDropSingletonDimensionsView<T>
Wraps the
Views.dropSingletonDimensions(RandomAccessibleInterval)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendBorderView<T,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendBorder(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendMirrorDoubleView<T,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendMirrorDouble(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendMirrorSingleView<T,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendMirrorSingle(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendPeriodicView<T,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendPeriodic(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendRandomView<T extends RealType<T>,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendRandom(RandomAccessibleInterval, double, double) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendValueView<T extends Type<T>,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendValue(RandomAccessibleInterval, Type) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendView<T,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extend(RandomAccessibleInterval, OutOfBoundsFactory)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultExtendZeroView<T extends NumericType<T>,F extends RandomAccessibleInterval<T>>
Wraps the
Views.extendZero(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultFlatIterableView<T>
Wraps the
Views.flatIterable(RandomAccessibleInterval) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultHyperSliceView<T>
Wraps the
Views.hyperSlice(RandomAccessible, int, long) method. |
class |
IntervalHyperSliceView<T>
Wraps the
Views.hyperSlice(RandomAccessibleInterval, int, long)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultInterpolateView<I extends EuclideanSpace,T>
Wraps the
Views.interpolate(EuclideanSpace, InterpolatorFactory)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultIntervalView<T>
Wraps the
Views.interval(RandomAccessible, Interval) method. |
class |
IntervalViewMinMax<T>
Wraps the
Views.interval(RandomAccessible, long[], long[]) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultInvertAxisView<T>
Wraps the
Views.invertAxis(RandomAccessible, int) method. |
class |
IntervalInvertAxisView<T>
Wraps the
Views.invertAxis(RandomAccessible, int) method while
preserving interval bounds. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultOffsetView<T>
Wraps the
Views.offset(RandomAccessible, long[]) method. |
class |
OffsetViewInterval<T>
Wraps the
Views.offsetInterval(RandomAccessible, Interval) method. |
class |
OffsetViewOriginSize<T>
Wraps the
Views.offsetInterval(RandomAccessible, long[], long[])
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultPermuteCoordinatesInverseView<T>
Wraps the
Views.permuteCoordinatesInverse(RandomAccessibleInterval, int[])
method. |
class |
PermuteCoordinateInverseViewOfDimension<T>
Wraps the
Views.permuteCoordinateInverse(RandomAccessibleInterval, int[], int)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultPermuteCoordinatesView<T>
Wraps the
Views.permuteCoordinates(RandomAccessibleInterval, int[])
method. |
class |
PermuteCoordinatesViewOfDimension<T>
Wraps the
Views.permuteCoordinates(RandomAccessibleInterval, int[], int)
method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultPermuteView<T>
Wraps the
Views.permute(RandomAccessible, int, int) method. |
class |
IntervalPermuteView<T>
Wraps the
Views.permute(RandomAccessible, int, int) method while
preserving interval bounds. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultRasterView<T>
Wraps the
Views.raster(RealRandomAccessible) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultRotateView<T>
Wraps the
Views.rotate(RandomAccessible, int, int) method. |
class |
IntervalRotateView<T>
Wraps the
Views.rotate(RandomAccessibleInterval, int, int) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultScaleView<T>
Scales a
RandomAccessibleInterval in each dimension with the provided
scale factors. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultShearView<T>
Wraps the
Views.shear(RandomAccessible, int, int) method. |
class |
ShearViewInterval<T>
Wraps the
Views.shear(RandomAccessible, Interval, int, int) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultStackView<T>
Wraps the
Views.stack(List) method. |
class |
StackViewWithAccessMode<T>
Wraps the
Views#stack(StackAccessMode, List) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultSubsampleView<T>
Wraps the
Views.subsample(RandomAccessible, long) method. |
class |
IntervalSubsampleView<T>
Wraps the
Views.subsample(RandomAccessible, long) method while
preserving interval bounds. |
class |
SubsampleIntervalViewStepsForDims<T>
Wraps the
Views.subsample(RandomAccessible, long[]) method while
preserving interval bounds. |
class |
SubsampleViewStepsForDims<T>
Wraps the
Views.subsample(RandomAccessible, long[]) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultTranslateView<T>
Wraps the
Views.translate(RandomAccessible, long[]) method. |
class |
IntervalTranslateView<T>
Wraps the
Views.translate(RandomAccessible, long[]) method while
preserving interval bounds. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultUnshearView<T>
Wraps the
Views.unshear(RandomAccessible, int, int) method. |
class |
UnshearViewInterval<T>
Wraps the
Views.unshear(RandomAccessible, Interval, int, int) method. |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultZeroMinView<T>
Wraps the
Views.zeroMin(RandomAccessibleInterval) method. |
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